BAC Information

Click to search

BAC

Clone NameB6Ng01-123F07
Chromosome3 (Build37)
Map Location 14,383,196 - 14,584,647
singlet/doubletdoublet
Overlap geneLOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5
Upstream geneLOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882, EG622229
Downstream gene1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1, LOC668101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123F07.bB6Ng01-123F07.g
ACCDH926525DH926526
length1,132659
definitionDH926525|Mus musculus domesticus DNA, BAC clone: B6Ng01-123F07, 5' end.DH926526|Mus musculus domesticus DNA, BAC clone: B6Ng01-123F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,583,488 - 14,584,647)(14,383,196 - 14,383,852)
sequence
gaattcaaaatctaagtattctaacagcaatgctgtataaaaaatcaaag
aaatttcacaaaaaagaatgaggagggctgaagtaatggctcggcagtta
agagtgcttgctgctctcctggaggacctaagttcaattcctagcaccca
tgtgggacagctcacaatgcactggcgctgacctccacaagcagacactc
acacaaacacggacaaaaaataaatctaaaagtactaaggcaaaaggatc
tcaagtgacacaccaagatgggccagaaaatattttagtaagagtaaaaa
ctttaacaattcagacatggcattttatattcatccatttccttaattga
ctattgcctaatttcaaactcaactcataattaatatataaaatatttga
ttttaacctgtagcaactgggtaactgtaacaggactttacagatattat
atgttggaaaatgccactcctgagttcaccttcagtaactgagtgacagt
ggcatgttatcagtcaccaaaatgcaccacatttccactgttgctgtgag
gtggagattttcccgatgcactcatgctataccctctaataaaaagccag
tgccttcttttcctgctctttcccctccacccttgctcacaggcagcctc
tgtaagccccactcccccaacagacccctcacgtgagatctgctgcatag
tgtgatcgctgcagcacatcttggctctgacttaccaaggttcttgtggt
ggtaaatcctaacactgccaaggtaaagctcacaatgactctgcaaagta
gatgttctcatattacagaaaaacccaaacggctaaagaataaggacaat
gtttgacattaatccttgccaggcgtggtggcgcacgcctttaatcccag
cacttgggaggcaaaggcaggcagattctgagtttgaggccagcctggtc
tacaaagtgagttccaggatagccagggctatacagagaaccctgtctcg
aaacaacaaaaaacctagaaacaaaaataccccaaacaaaaaaagaaata
tcttatcatgaacaaactattacacagtttagtaattaaatacaacattc
agttataaccttgtactgaatagggatcaagt
gaattcattaggatcttccttgcccatcaaagagggaacttgatgcctaa
ggaggtcaggcaaactctagactttggggtactctgacatgggttgctct
ccattcctaaatgaaaaaaaaaattcactatttccacactcaaaggcaag
acgccagagaaagagctctttctgatggccccacaattctatctgcacct
ccctgcctctcatggggacttctcagactgagatgcaccaagaatctcag
actcctacccagaggaaactctctggaagccaataaaccacaaccttttc
tagcccaataaacccagcttttcctgcctacactgctggtttgctctact
gggctccaatggcatgggctcaggtgtcctggccaatagagggtggacat
tcagcctagaaacagaggtcgatgggggtgaggtgtggagtgagggacct
ggtctctggaaaggggtgactagacagatgtctcctaaaaggttatggta
tcaaatgccaggcaggaggaagcccttagtggggaaggagttcaggcaga
cccctaaaccaaaaagaagccagatacccaaacccaagtctttaatgatg
tgcaggagggctgagtgagaaagaatcttggaggtgtccaaggcttctgg
gaatggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_14583488_14584647
seq2: B6Ng01-123F07.b_46_1177 (reverse)

seq1  ACTTGAATTCCCTATTCAGTACAAGGTTATAACTGAATTGTGTATTTTAA  50
      ||||||  ||||||||||||||||||||||||||||||  |||||||  |
seq2  ACTTGA--TCCCTATTCAGTACAAGGTTATAACTGAATGTTGTATTT--A  46

seq1  ATTACATAAAACTTGTGTAATAAGTTTGTTTCATGAATAAGGATTAATGT  100
      ||||| ||||   |||||||| |||||| |||||| |||| |||  || |
seq2  ATTAC-TAAA--CTGTGTAAT-AGTTTG-TTCATG-ATAA-GAT--ATTT  87

seq1  CTTTTTTTGTTTGGGGTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTTTG  150
      ||||||||||||||||         | ||||| ||| | ||  |||||||
seq2  CTTTTTTTGTTTGGGG---------TATTTTTGTTTCTAGG--TTTTTTG  126

seq1  TTTGTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTATCCTGGAACT  200
      ||   ||||||||||||| |||||||||||||||||||||||||||||||
seq2  TT--GTTTCGAGACAGGG-TTCTCTGTATAGCCCTGGCTATCCTGGAACT  173

seq1  CACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTTTGC  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACTTTGTAGACCAGGCTGGCCTCAAACTCAG-AATCTGCCTGCCTTTGC  222

seq1  CTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCTGGCAAGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCTGGCAAGGATT  272

seq1  AATGTCAAACATTGTCCTTATTCTTTAGCCGTTTGGGTTTTTCTGTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAAACATTGTCCTTATTCTTTAGCCGTTTGGGTTTTTCTGTAATA  322

seq1  TGAGAACATCTACTTTGCAGAGTCATTGTGAGCTTTACCTTGGCAGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACATCTACTTTGCAGAGTCATTGTGAGCTTTACCTTGGCAGTGTT  372

seq1  AGGATTTACCACCACAAGAACCTTGGTAAGTCAGAGCCAAGATGTGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTACCACCACAAGAACCTTGGTAAGTCAGAGCCAAGATGTGCTGC  422

seq1  AGCGATCACACTATGCAGCAGATCTCACGTGAGGGGTCTGTTGGGGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATCACACTATGCAGCAGATCTCACGTGAGGGGTCTGTTGGGGGAGT  472

seq1  GGGGCTTACAGAGGCTGCCTGTGAGCAAGGGTGGAGGGGAAAGAGCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTACAGAGGCTGCCTGTGAGCAAGGGTGGAGGGGAAAGAGCAGGA  522

seq1  AAAGAAGGCACTGGCTTTTTATTAGAGGGTATAGCATGAGTGCATCGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGCACTGGCTTTTTATTAGAGGGTATAGCATGAGTGCATCGGGA  572

seq1  AAATCTCCACCTCACAGCAACAGTGGAAATGTGGTGCATTTTGGTGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCCACCTCACAGCAACAGTGGAAATGTGGTGCATTTTGGTGACTG  622

seq1  ATAACATGCCACTGTCACTCAGTTACTGAAGGTGAACTCAGGAGTGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGCCACTGTCACTCAGTTACTGAAGGTGAACTCAGGAGTGGCAT  672

seq1  TTTCCAACATATAATATCTGTAAAGTCCTGTTACAGTTACCCAGTTGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACATATAATATCTGTAAAGTCCTGTTACAGTTACCCAGTTGCTA  722

seq1  CAGGTTAAAATCAAATATTTTATATATTAATTATGAGTTGAGTTTGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTAAAATCAAATATTTTATATATTAATTATGAGTTGAGTTTGAAAT  772

seq1  TAGGCAATAGTCAATTAAGGAAATGGATGAATATAAAATGCCATGTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAATAGTCAATTAAGGAAATGGATGAATATAAAATGCCATGTCTGA  822

seq1  ATTGTTAAAGTTTTTACTCTTACTAAAATATTTTCTGGCCCATCTTGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAAAGTTTTTACTCTTACTAAAATATTTTCTGGCCCATCTTGGTG  872

seq1  TGTCACTTGAGATCCTTTTGCCTTAGTACTTTTAGATTTATTTTTTGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTGAGATCCTTTTGCCTTAGTACTTTTAGATTTATTTTTTGTCC  922

seq1  GTGTTTGTGTGAGTGTCTGCTTGTGGAGGTCAGCGCCAGTGCATTGTGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGTGAGTGTCTGCTTGTGGAGGTCAGCGCCAGTGCATTGTGAG  972

seq1  CTGTCCCACATGGGTGCTAGGAATTGAACTTAGGTCCTCCAGGAGAGCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCACATGGGTGCTAGGAATTGAACTTAGGTCCTCCAGGAGAGCAG  1022

seq1  CAAGCACTCTTAACTGCCGAGCCATTACTTCAGCCCTCCTCATTCTTTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTCTTAACTGCCGAGCCATTACTTCAGCCCTCCTCATTCTTTTT  1072

seq1  TGTGAAATTTCTTTGATTTTTTATACAGCATTGCTGTTAGAATACTTAGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATTTCTTTGATTTTTTATACAGCATTGCTGTTAGAATACTTAGA  1122

seq1  TTTTGAATTC  1160
      ||||||||||
seq2  TTTTGAATTC  1132

seq1: chr3_14383196_14383852
seq2: B6Ng01-123F07.g_68_726

seq1  GAATTCATTAGGATCTTCCTTGCCCATCAAAGAGGGAACTTGATGCCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGATCTTCCTTGCCCATCAAAGAGGGAACTTGATGCCTAA  50

seq1  GGAGGTCAGGCAAACTCTAGACTTTGGGGTACTCTGACATGGGTTGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCAGGCAAACTCTAGACTTTGGGGTACTCTGACATGGGTTGCTCT  100

seq1  CCATTCCTAAATGAAAAAAAAAATTCACTATTTCCACACTCAAAGGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTAAATGAAAAAAAAAATTCACTATTTCCACACTCAAAGGCAAG  150

seq1  ACGCCAGAGAAAGAGCTCTTTCTGATGGCCCCACAATTCTATCTGCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAGAGAAAGAGCTCTTTCTGATGGCCCCACAATTCTATCTGCACCT  200

seq1  CCCTGCCTCTCATGGGGACTTCTCAGACTGAGATGCACCAAGAATCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTCTCATGGGGACTTCTCAGACTGAGATGCACCAAGAATCTCAG  250

seq1  ACTCCTACCCAGAGGAAACTCTCTGGAAGCCAATAAACCACAACCTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTACCCAGAGGAAACTCTCTGGAAGCCAATAAACCACAACCTTTTC  300

seq1  TAGCCCAATAAACCCAGCTTTTCCTGCCTACACTGCTGGTTTGCTCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAATAAACCCAGCTTTTCCTGCCTACACTGCTGGTTTGCTCTACT  350

seq1  GGGCTCCAATGGCATGGGCTCAGGTGTCCTGGCCAATAGAGGGTGGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCAATGGCATGGGCTCAGGTGTCCTGGCCAATAGAGGGTGGACAT  400

seq1  TCAGCCTAGAAACAGAGGTCGATGGGGGTGAGGTGTGGAGTGAGGGACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTAGAAACAGAGGTCGATGGGGGTGAGGTGTGGAGTGAGGGACCT  450

seq1  GGTCTCTGGAAAGGGGTGACTAGACAGATGTCTCCT-AAAGGTAATGGTA  499
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  GGTCTCTGGAAAGGGGTGACTAGACAGATGTCTCCTAAAAGGTTATGGTA  500

seq1  TCAAATGCCAGGCAGGAGGAAGCCCTTAGTGGGGAAGGAGTTCAGGCAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCCAGGCAGGAGGAAGCCCTTAGTGGGGAAGGAGTTCAGGCAGA  550

seq1  CCCCTAAACC-AAAAGAAGCCAGATACCCAAACCCAAGTCATTAATGATG  598
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  CCCCTAAACCAAAAAGAAGCCAGATACCCAAACCCAAGTCTTTAATGATG  600

seq1  TGCAGGAGGGCTGAGTGAGAAAGAATCTTGGAGGTGTCCAAGGCTTCTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGGGCTGAGTGAGAAAGAATCTTGGAGGTGTCCAAGGCTTCTGG  650

seq1  GAATGGACT  657
      |||||||||
seq2  GAATGGACT  659