BAC Information

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BAC

Clone NameB6Ng01-123I15
Chromosome3 (Build37)
Map Location 95,119,910 - 95,241,095
singlet/doubletdoublet
Overlap geneLass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt
Upstream geneThem4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9
Downstream geneCtsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123I15.bB6Ng01-123I15.g
ACCDH926678DH926679
length8421,024
definitionDH926678|Mus musculus domesticus DNA, BAC clone: B6Ng01-123I15, 5' end.DH926679|Mus musculus domesticus DNA, BAC clone: B6Ng01-123I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,119,910 - 95,120,748)(95,240,057 - 95,241,095)
sequence
gaattcctgtgcctaagctgcactcctggcatccaaaccagatctcactt
atccgagtttccagcctcagctgtcagggtgttctaagcgctgtgaggtc
tggagtgagccggtcttccccagaactgagttagggaaggcctcccccag
aaattacttctgtttgtgtgagagctggggtagggggtcacttcccatcc
cagagctaaggtgactgtcttgcatttgtgatggggcccctaaggtcaaa
tattccgttccttaggtcttgtttctggccacatagtgcctaatttctaa
ggggtgtggtgtggtgtgctgtgtgtgtgaactagttctggtgcctctat
tctcactggagcctctgactaggtttctctctgtcgctggccacagggag
actgacattgtacagttcctttcaacactaccccatttgccgctgctact
tcaacctactggcctctccctgtctctggaaggcatattcttatatagtg
tttggggttggagcagggaagtttgtgaaacatcccagagaagcctgagg
ccacggttgtcacagcctcaccccttagctttaccagaatctgccctgta
tttttgggctcatactttagcccgaagcagttgacttctattgctcttca
atatctagaaagaagttcttttttttttttttttttaaatggttgttgat
tttgttttttttttttttagatttatttatttcattatatgtaaatacca
tagctgtcttcagacactttcagaagaaggcatcaaatctcattacggat
ggttgtgagccaaccatgtgggttgcctgggaatggaactca
gaattctccacatggaaaaaagaaatcttgagctaggaatgtagcccccg
gaaaaggaagttaaggcagatggtaaagagagcagggggttagtctcact
gggtctgtcgttctctgttctccgctcagacctaccatcccatctcataa
gaggctgaggctacgcagggatgtcagctacagcaggaaccactgggtgc
tatgccataactaacagcagactagaatttaagaaaactcttacattctc
aggttaattttcaaaggtttgctaagaacctacacctcaccttttgaggt
ttttgcttggtttggtctggcttttgattttgaaacaaggtctcactatg
tagcatggaactgactttgtagaccaagatggccatgaactaagatatcc
ccctgcttctgcaaagattaaaggaattccagcctattctccctctgttt
ggtaagtacctatgatgactctgcccacctcaaaattgaagaagcaagca
atcaaataacaataaataaaatcaattattttctactggtgatgacactc
acagctttaatccagcactcaggaggcaggagcaagcagatcttgagttg
gaggccatcctggtctacagagtgagtttcatgacagccagggatacata
tagaagccctgccttgaaaaccaaagtcaaacaaacaaaacaaacaaaca
acaactgtttattaaaaaagattcttaaatcgtactttttaaaaagtttt
gatagtttatataggatggcacatgcgagtgattccagcacttgaagata
gaaagcaagaagacaactgcaggttcaagccagcttgatcttcacagaac
actgcaggccagcttcttcaaaattccccactcagaaaaaaataagaaaa
aatactatttcctgctacagacttaacctaatatgataaggaatgactat
tgggcaagaaaggtggtttaagtattggttaaatcagacagggcagctag
aaagcttctgactttctacgtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95119910_95120748
seq2: B6Ng01-123I15.b_43_884

seq1  GAATTCCTGTGCCTAAGCTGCACTCCTGGCATCCAAACCAGATCTCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGCCTAAGCTGCACTCCTGGCATCCAAACCAGATCTCACTT  50

seq1  ATCCGAGTTTCCAGCCTCAGCTGTCAGGGTGTTCTAAGCGCTGTGAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGAGTTTCCAGCCTCAGCTGTCAGGGTGTTCTAAGCGCTGTGAGGTC  100

seq1  TGGAGTGAGCCGGTCTTCCCCAGAACTGAGTTAGGGAAGGCCTCCCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGAGCCGGTCTTCCCCAGAACTGAGTTAGGGAAGGCCTCCCCCAG  150

seq1  AAATTACTTCTGTTTGTGTGAGAGCTGGGGTAGGGGGTCACTTCCCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTCTGTTTGTGTGAGAGCTGGGGTAGGGGGTCACTTCCCATCC  200

seq1  CAGAGCTAAGGTGACTGTCTTGCATTTGTGATGGGGCCCCTAAGGTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTAAGGTGACTGTCTTGCATTTGTGATGGGGCCCCTAAGGTCAAA  250

seq1  TATTCCGTTCCTTAGGTCTTGTTTCTGGCCACATAGTGCCTAATTTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCGTTCCTTAGGTCTTGTTTCTGGCCACATAGTGCCTAATTTCTAA  300

seq1  GGGGTGTGGTGTGGTGTGCTGTGTGTGTGAACTAGTTCTGGTGCCTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTGGTGTGGTGTGCTGTGTGTGTGAACTAGTTCTGGTGCCTCTAT  350

seq1  TCTCACTGGAGCCTCTGACTAGGTTTCTCTCTGTCGCTGGCCACAGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGGAGCCTCTGACTAGGTTTCTCTCTGTCGCTGGCCACAGGGAG  400

seq1  ACTGACATTGTACAGTTCCTTTCAACACTACCCCATTTGCCGCTGCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATTGTACAGTTCCTTTCAACACTACCCCATTTGCCGCTGCTACT  450

seq1  TCAACCTACTGGCCTCTCCCTGTCTCTGGAAGGCATATTCTTATATAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTACTGGCCTCTCCCTGTCTCTGGAAGGCATATTCTTATATAGTG  500

seq1  TTTGGGGTTGGAGCAGGGAAGTTTGTGAAACATCCCAGAGAAGCCTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTTGGAGCAGGGAAGTTTGTGAAACATCCCAGAGAAGCCTGAGG  550

seq1  CCACGGTTGTCACAGCCTCACCCCTTAGCTTTACCAGAATCTGCCCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGTTGTCACAGCCTCACCCCTTAGCTTTACCAGAATCTGCCCTGTA  600

seq1  TTTTTGGGCTCATACTTTAGCCCGAAGCAGTTGACTTCTATTGCTCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGCTCATACTTTAGCCCGAAGCAGTTGACTTCTATTGCTCTTCA  650

seq1  ATATCTAGAAAGAAGTTCTTTTTTTTTTTTTTTTTTAAATGGTTGTTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAGAAAGAAGTTCTTTTTTTTTTTTTTTTTTAAATGGTTGTTGAT  700

seq1  TTTGTTTTTTTTTTTTTTTAGATTTATTTATTTCATTATATGTAAATACC  750
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTG-TTTTTTTTTTTTTTAGATTTATTTATTTCATTATATGTAAATACC  749

seq1  ATAGCTGTCTTCAGACAC-TCCAGAAGAAGGCATCAGATCTCATTACGGA  799
      |||||||||||||||||| | ||||||||||||||| |||||||||||||
seq2  ATAGCTGTCTTCAGACACTTTCAGAAGAAGGCATCAAATCTCATTACGGA  799

seq1  TGGTTGTGAGCC-ACCATGT-GGTTG-CTGGGAATTGAACTCA  839
      |||||||||||| ||||||| ||||| |||||||| |||||||
seq2  TGGTTGTGAGCCAACCATGTGGGTTGCCTGGGAATGGAACTCA  842

seq1: chr3_95240057_95241095
seq2: B6Ng01-123I15.g_68_1091 (reverse)

seq1  GACACGTTAGTAAGTCAGAAGCTTTTCTAGCTGCCCTGTTCTGATTTTAA  50
      |||||| ||| ||||||||||| ||||||||||||||| ||||||||  |
seq2  GACACG-TAGAAAGTCAGAAGC-TTTCTAGCTGCCCTG-TCTGATTT--A  45

seq1  ACCAATTACTAAAACAACACTTTCTTGACCAAATAGTCATTTCCTTATCA  100
      ||||| |||| |||| || |||||||| || |||||||| ||||||||| 
seq2  ACCAA-TACTTAAACCAC-CTTTCTTG-CCCAATAGTCA-TTCCTTATC-  90

seq1  ATATTAGCTTAAGTCTGTAAGCAGGAAATAGTAATTTTTTTCTATTTTTT  150
      ||||||| |||||||||| ||||||||||||||  |||||||| | ||||
seq2  ATATTAGGTTAAGTCTGT-AGCAGGAAATAGTA--TTTTTTCT-TATTTT  136

seq1  TTTCTGAGTGGGGAATTTTG-AGAGGCTGGCCTGCAGTGTTCTGTGAAGA  199
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  TTTCTGAGTGGGGAATTTTGAAGAAGCTGGCCTGCAGTGTTCTGTGAAGA  186

seq1  TCAGGCTGGCCTTGAACTTGCAGTGGTCTTCTTGC-TTCTATCTTCAAGT  248
      ||| ||||| ||||||| |||||| |||||||||| ||||||||||||||
seq2  TCAAGCTGG-CTTGAACCTGCAGTTGTCTTCTTGCTTTCTATCTTCAAGT  235

seq1  GCTGGAATCACTCGCATGTGCCATCCTATATAAACTATCAAAACTTTTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATCACTCGCATGTGCCATCCTATATAAACTATCAAAACTTTTTA  285

seq1  AAAAGTACGATTTAAGAATCTTTTTTAATGAAACAGTTGTTTGTTTGTTT  348
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  AAAAGTACGATTTAAGAATCTTTTTTAAT-AAACAGTTG-TTGTTTGTTT  333

seq1  G-TTTGTTTGTTTTGACTTTGGTTTTTCAAGGCAGGGCTTCTATATGTAT  397
      | |||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  GTTTTGTTTG-TTTGACTTTGG-TTTTCAAGGCAGGGCTTCTATATGTAT  381

seq1  CCCTGGCTGTCATGAAACTCACTCTGTAGACCAGGATGGCCTCCAACTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCATGAAACTCACTCTGTAGACCAGGATGGCCTCCAACTCA  431

seq1  AGATCTGCTTGCTCCTGCCTCCTGAGTGCTGGATTAAAGCTGTGAGTGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGCTTGCTCCTGCCTCCTGAGTGCTGGATTAAAGCTGTGAGTGTC  481

seq1  ATCACCAGTAG-AAATAATTGATTTTATTTATTGTTATTTGATTGCTTGC  546
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAGTAGAAAATAATTGATTTTATTTATTGTTATTTGATTGCTTGC  531

seq1  TTCTTCAATTTTGAGGTGGGCAGAGTCATCATAGGTACTTACCAAACAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAATTTTGAGGTGGGCAGAGTCATCATAGGTACTTACCAAACAGA  581

seq1  GGGAGAATAGGCTGGAATTCCTTTAATCTTTGCAGAAGCAGGGGGATATC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATAGGCTGGAATTCCTTTAATCTTTGCAGAAGCAGGGGGATATC  631

seq1  TTAGTTCATGGCCATCTTGGTCTACAAAGTCAGTTCCATGCTACATAGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCATGGCCATCTTGGTCTACAAAGTCAGTTCCATGCTACATAGTG  681

seq1  AGACCTTGTTTCAAAATCAAAAGCCAGACCAAACCAAGCAAAAACCTCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGTTTCAAAATCAAAAGCCAGACCAAACCAAGCAAAAACCTCAA  731

seq1  AAGGTGAGGTGTAGGTTCTTAGCAAACCTTTGAAAATTAACCTGAGAATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAGGTGTAGGTTCTTAGCAAACCTTTGAAAATTAACCTGAGAATG  781

seq1  TAAGAGTTTTCTTAAATTCTAGTCTGCTGTTAGTTATGGCATAGCACCCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTTTCTTAAATTCTAGTCTGCTGTTAGTTATGGCATAGCACCCA  831

seq1  GTGGTTCCTGCTGTAGCTGACATCCCTGCGTAGCCTCAGCCTCTTATGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCCTGCTGTAGCTGACATCCCTGCGTAGCCTCAGCCTCTTATGAG  881

seq1  ATGGGATGGTAGGTCTGAGCGGAGAACAGAGAACGACAGACCCAGTGAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATGGTAGGTCTGAGCGGAGAACAGAGAACGACAGACCCAGTGAGA  931

seq1  CTAACCCCCTGCTCTCTTTACCATCTGCCTTAACTTCCTTTTCCGGGGGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCCCTGCTCTCTTTACCATCTGCCTTAACTTCCTTTTCCGGGGGC  981

seq1  TACATTCCTAGCTCAAGATTTCTTTTTTCCATGTGGAGAATTC  1039
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCTAGCTCAAGATTTCTTTTTTCCATGTGGAGAATTC  1024