BAC Information

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BAC

Clone NameB6Ng01-123M19
Chromosome3 (Build37)
Map Location 95,274,518 - 95,396,823
singlet/doubletdoublet
Overlap geneArnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l
Upstream gene2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305
Downstream geneEG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123M19.bB6Ng01-123M19.g
ACCDH926870DH926871
length1,101694
definitionDH926870|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M19, 5' end.DH926871|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,274,518 - 95,276,624)(95,396,133 - 95,396,823)
sequence
gaattcagcccttagctataagtgatcaagtattgggggagtgagaatag
ataaatttagttgtgagaacttatttagcaaggtgtcaggtattttagaa
cttggctcatacaaatgacctgtgaagtgaaagaagggtgtgtccccaga
gaggttgccacactcatggatcagtgttccttgggttatatttctagagc
atggaagaaatctgcctcacccttgaagcaacttttagtcttaacgatga
gagacgtgtagtaaacaacccctgttgctccatgatatgttttgttacac
ttgatatatcatgaggaaaacagaaagggcagaaatacttgccatcattc
aggagccccatctaagagttatctcactattgccaggagagagaactaaa
tgtgagtagagtaaacgggtgagtagtaagatgcctaagtgaaaaacgat
gggaagaggcatgcggaaaagagccggtgtctttgttaatagtttgtgtg
tgatagatatacaatggtggcatgtctaactttatttagtctctctagac
ttgactgagaatgactaggaaagacaagttacatttcacttaaaaatcca
cgattgggtagggcatagtggtgaatgcctttaatcccagtactcaggaa
gctaaggccagcttgttctacagaggtccaggccagccagagctacatag
caagaccctgtttcaaaaataaaaagacatatgattgttcatacctagcc
tatgcaaagccctgaatttggtcccaacactatatgcagttgtgtatggt
aactggatatggctgctcataacccgtctttcagcactgaggcacaagta
ggaggttgagggttagagttattctcaaggccagcctgtaacataggaga
ctgtctaaatagatacatacacacataaagatggtcaataggagactgtc
taaatagatacatacacacatagatggtcatataggagactgtcttaaat
agatactaccacacatagaatggtaattatagaggatggtctaaaataaa
ttaccacatagaatggtatataggagactgtctaatagataaatacacat
a
gaattcactatgtacacgcattaggctggtctagaattctcagagagctg
cttgcttctgcctctttgagtgctggggtttaatgagtgcaccaccacaa
atggcacacctggctcccttttggttttctgagatagggtttcttttttt
tttttttaagatttatttatttattatatgtaagtcactgtagctgtctt
cagacactccagaagagggcatcagatttcgttatggatggttgtgagcc
accatgtggttgctgggatttgaactcgggaccttcagaagagcagtcgg
cgctcttaaccactgagccatctcaccagcccctgagatagggtttcaaa
ctgccaagtacctcaggttagctttgaattcaatatgtgagtgagatgat
ctagaactcctgatcctcctgcctccacctccccagtgctggaatcatag
atgtaaatccaccaatcatggcttgaaaaaattatttatactataagaaa
ctcagttatttgtttctgtaaaacagatagtcatgcatattccttgtttt
tatttgcttgttttaagacatagccctgatgagcctataactcattgggt
agatcaaggtgggccttgaactcttgggggatgttcttggtgttgggaat
tctagcctcacaaatgtgtgccaacatattttgctgttgttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95274518_95276624
seq2: B6Ng01-123M19.b_47_1147

seq1  GAATTCAGCCCTTAGCTATAAGTGATCAAGTATTGGGGGAGTGAGAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCTTAGCTATAAGTGATCAAGTATTGGGGGAGTGAGAATAG  50

seq1  ATAAATTTAGTTGTGAGAACTTATTTAGCAAGGTGTCAGGTATTTTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTAGTTGTGAGAACTTATTTAGCAAGGTGTCAGGTATTTTAGAA  100

seq1  CTTGGCTCATACAAATGACCTGTGAAGTGAAAGAAGGGTGTGTCCCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCATACAAATGACCTGTGAAGTGAAAGAAGGGTGTGTCCCCAGA  150

seq1  GAGGTTGCCACACTCATGGATCAGTGTTCCTTGGGTTATATTTCTAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGCCACACTCATGGATCAGTGTTCCTTGGGTTATATTTCTAGAGC  200

seq1  ATGGAAGAAATCTGCCTCACCCTTGAAGCAACTTTTAGTCTTAACGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAAATCTGCCTCACCCTTGAAGCAACTTTTAGTCTTAACGATGA  250

seq1  GAGACGTGTAGTAAACAACCCCTGTTGCTCCATGATATGTTTTGTTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGTGTAGTAAACAACCCCTGTTGCTCCATGATATGTTTTGTTACAC  300

seq1  TTGATATATCATGAGGAAAACAGAAAGGGCAGAAATACTTGCCATCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATATCATGAGGAAAACAGAAAGGGCAGAAATACTTGCCATCATTC  350

seq1  AGGAGCCCCATCTAAGAGTTATCTCACTATTGCCAGGAGAGAGAACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCCCATCTAAGAGTTATCTCACTATTGCCAGGAGAGAGAACTAAA  400

seq1  TGTGAGTAGAGTAAACGGGTGAGTAGTAAGATGCCTAAGTGAAAAACGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTAGAGTAAACGGGTGAGTAGTAAGATGCCTAAGTGAAAAACGAT  450

seq1  GGGAAGAGGCATGCGGAAAAGAGCCGGTGTCTTTGTTAATAGTTTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGGCATGCGGAAAAGAGCCGGTGTCTTTGTTAATAGTTTGTGTG  500

seq1  TGATAGATATACAATGGTGGCATGTCTAACTTTATTTAGTCTCTCTAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGATATACAATGGTGGCATGTCTAACTTTATTTAGTCTCTCTAGAC  550

seq1  TTGACTGAGAATGACTAGGAAAGACAAGTTACATTTCACTTAAAAATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGAGAATGACTAGGAAAGACAAGTTACATTTCACTTAAAAATCCA  600

seq1  CGATTGGGTAGGGCATAGTGGTGAATGCCTTTAATCCCAGTACTCAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGGGTAGGGCATAGTGGTGAATGCCTTTAATCCCAGTACTCAGGAA  650

seq1  GCTAAGGCCAGCTTGTTCTACAGAGGTCCAGGCCAGCCAGAGCTACATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGCCAGCTTGTTCTACAGAGGTCCAGGCCAGCCAGAGCTACATAG  700

seq1  CAAGACCCTGTTTCAAAAATAAAAAGACATATGATTGTTCATACCTAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCCTGTTTCAAAAATAAAAAGACATATGATTGTTCATACCTAGCC  750

seq1  TATGCAAAGCCCTGAATTTGGTCCCAACACTATATGCAGTTGTGTATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAGCCCTGAATTTGGTCCCAACACTATATGCAGTTGTGTATGGT  800

seq1  AACTGGATATGGCTGCTCATAACCCGTCTTTCAGCACTGAGGCACAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGATATGGCTGCTCATAACCCGTCTTTCAGCACTGAGGCACAAGTA  850

seq1  GGAGGTTGAGGGTTAGAGTTATTCTCAAGGCCAGCCTGTTAACATAGGAG  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGAGGTTGAGGGTTAGAGTTATTCTCAAGGCCAGCCTG-TAACATAGGAG  899

seq1  ACTGTCTAAAATAGATACATACACACAT-AAGATGGTCATATAGGAGACT  949
      ||||||| |||||||||||||||||||| |||||||||| ||||||||||
seq2  ACTGTCT-AAATAGATACATACACACATAAAGATGGTCA-ATAGGAGACT  947

seq1  GTCTAAAATAGATACATACACACATAAGATGGTCATATAGGAGACTGTCT  999
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTCT-AAATAGATACATACACACAT-AGATGGTCATATAGGAGACTGTCT  995

seq1  AAAATAGATACATACACACATAAGATGGTAA-TATAGGAGACTGTCTAAA  1048
       ||||||||||   ||||||||  ||||||| |||||  ||  |||||||
seq2  TAAATAGATACTACCACACATAGAATGGTAATTATAGAGGATGGTCTAAA  1045

seq1  ATAGATACACACATAAGATGGTAATATAGGAGACTGTCTAAAATAGATAC  1098
      ||| ||   ||||||  ||||| ||||||||||||||||  |||||||| 
seq2  ATAAATTACCACATAGAATGGT-ATATAGGAGACTGTCT--AATAGATAA  1092

seq1  ACACACACATAAGATGGTAACATAGGAGCCTGTCTAAAATAGATACACAC  1148
      | ||||| |                                         
seq2  ATACACATA-----------------------------------------  1101

seq1  ATAAGATGGTAACATAGGAGACTGTCTAAAATAGATACATACACACATAA  1198
                                                        
seq2  --------------------------------------------------  1101

seq1  GATGGTAACATAGGAGACTGTCTAAAATAGATACATACACACATAAGATG  1248
                                                        
seq2  --------------------------------------------------  1101

seq1  GTAACATAGGAGACTGTCTAAAATAGATACATACACACATAAGATGGTAA  1298
                                                        
seq2  --------------------------------------------------  1101

seq1  CATAGGAGACTGTCTAAAATAGATACATACACACATAAGATGGTAATATA  1348
                                                        
seq2  --------------------------------------------------  1101

seq1  GGAGACTGTCTAAAATAGATACATACACACATAAGATGGTAATATAGGAG  1398
                                                        
seq2  --------------------------------------------------  1101

seq1  ACTGTCTAAAATAGATACACACATAAGATGGTAATATAGGAGACTGTCTA  1448
                                                        
seq2  --------------------------------------------------  1101

seq1  AAATAGATACATACACACATAAGATGGTCATATAGGATATTTGTTTTTTT  1498
                                                        
seq2  --------------------------------------------------  1101

seq1  AGATACATACACACATAAGATGGTGATATAGGAGACTGTCTAAAATAGAT  1548
                                                        
seq2  --------------------------------------------------  1101

seq1  ACATACACACATAAGATGGTAATATAGGAGACTGTCTAAAATAGATACAT  1598
                                                        
seq2  --------------------------------------------------  1101

seq1  ACACACATAAGATGGTAATATAGGAGACTGTCTAAAATAGATACATACAC  1648
                                                        
seq2  --------------------------------------------------  1101

seq1  ACATAAGATGGTAATATAGGAGACTGTCTAAAATAGATACATACACACAT  1698
                                                        
seq2  --------------------------------------------------  1101

seq1  AAGATGGTAATATAGGAGACTGTCTAAAATAGATACACACATAAGATGGT  1748
                                                        
seq2  --------------------------------------------------  1101

seq1  AATATAGGAGACTGTCTAAAATAGATACATACACACATAAGATGGTAATA  1798
                                                        
seq2  --------------------------------------------------  1101

seq1  TAGGAGACTGTCTAAAATAGATACATACACACATAAGATGGTCATATAGG  1848
                                                        
seq2  --------------------------------------------------  1101

seq1  AGACTGTCTAAAATAGATACATACACACATAAGATGGTCATATAGGAGAC  1898
                                                        
seq2  --------------------------------------------------  1101

seq1  TGTCTAAAATAGATACATACACACATAAGATGGTAATATAGGAGACTGTC  1948
                                                        
seq2  --------------------------------------------------  1101

seq1  TAAAATAGATACATACACACATAAGATGGTAATATAGGAGACTGTCTAAA  1998
                                                        
seq2  --------------------------------------------------  1101

seq1  ATAGATACATACACACATAAGATGGTAACATAGGAGACTGTCTAAAATAG  2048
                                                        
seq2  --------------------------------------------------  1101

seq1  ATACATACACACATAAGATGGTAACATAGGAGACTGTCTAAAATAGATAC  2098
                                                        
seq2  --------------------------------------------------  1101

seq1  ATACACATA  2107
               
seq2  ---------  1101

seq1: chr3_95396133_95396823
seq2: B6Ng01-123M19.g_68_761 (reverse)

seq1  AAGAACAACAGC-AGATATGGTGGCACACATTTGTGAGGCTAGAATTCCC  49
      |||||||||||| | ||||| |||||||||||||||||||||||||||||
seq2  AAGAACAACAGCAAAATATGTTGGCACACATTTGTGAGGCTAGAATTCCC  50

seq1  AACACCAAGAACAT-CCCCAAGAGTTCAAGGCCAACC-TGATCTACCCAA  97
      |||||||||||||| |||||||||||||||||| ||| ||||||||||||
seq2  AACACCAAGAACATCCCCCAAGAGTTCAAGGCCCACCTTGATCTACCCAA  100

seq1  TGAGTTATAGGCTCATCAGGGCTATGTCTTAAAACAAGCAAATAAAAACA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTATAGGCTCATCAGGGCTATGTCTTAAAACAAGCAAATAAAAACA  150

seq1  AGGAATATGCATGACTATCTGTTTTACAGAAACAAATAACTGAGTTTCTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATGCATGACTATCTGTTTTACAGAAACAAATAACTGAGTTTCTT  200

seq1  ATAGTATAAATAATTTTTTCAAGCCATGATTGGTGGATTTACATCTATGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATAAATAATTTTTTCAAGCCATGATTGGTGGATTTACATCTATGA  250

seq1  TTCCAGCACTGGGGAGGTGGAGGCAGGAGGATCAGGAGTTCTAGATCATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCACTGGGGAGGTGGAGGCAGGAGGATCAGGAGTTCTAGATCATC  300

seq1  TCACTCACATATTGAATTCAAAGCTAACCTGAGGTACTTGGCAGTTTGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACATATTGAATTCAAAGCTAACCTGAGGTACTTGGCAGTTTGAA  350

seq1  ACCCTATCTCAGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCGCCGACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATCTCAGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCGCCGACT  400

seq1  GCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCA  450

seq1  CAACCATCCATAACGAAATCTGATGCCCTCTTCTGGAGTGTCTGAAGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCCATAACGAAATCTGATGCCCTCTTCTGGAGTGTCTGAAGACA  500

seq1  GCTACAGTGACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTGACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAAA  550

seq1  AGAAACCCTATCTCAGAAAACCAAAAGGGAGCCAGGTGTGCCATTTGTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTATCTCAGAAAACCAAAAGGGAGCCAGGTGTGCCATTTGTGG  600

seq1  TGGTGCACTCATTAAACCCCAGCACTCAAAGAGGCAGAAGCAAGCAGCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCACTCATTAAACCCCAGCACTCAAAGAGGCAGAAGCAAGCAGCTC  650

seq1  TCTGAGAATTCTAGACCAGCCTAATGCGTGTACATAGTGAATTC  691
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAATTCTAGACCAGCCTAATGCGTGTACATAGTGAATTC  694