BAC Information

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BAC

Clone NameB6Ng01-123P07
Chromosome3 (Build37)
Map Location 112,097,971 - 112,282,293
singlet/doubletdoublet
Overlap geneEG229746, LOC668717
Upstream geneLOC668712, LOC625585
Downstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123P07.bB6Ng01-123P07.g
ACCDH926988DH926989
length1,0951,235
definitionDH926988|Mus musculus domesticus DNA, BAC clone: B6Ng01-123P07, 5' end.DH926989|Mus musculus domesticus DNA, BAC clone: B6Ng01-123P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,281,177 - 112,282,293)(112,097,971 - 112,099,099)
sequence
gaattctatcttatatttcttttcttttcttttcctttttttaaaactgt
actgatttggagttgcgattaagaaacaattacaaatgtgggtatatcaa
ttttcagttatgttatcttataaaattttgatgggtttgaattgcaaatg
taattatgctacatattgtgtattagtttattagcaggtgtctgtctgtc
tgaattgaggacatggtgtgtgtagccccttcttggttttgtattttgtc
atgttcataaagccacctcttagcactattctgaactgaaatattagttc
tttatttttcaaaatctttacattaggtaatgcttcattttcaacatttt
tcatcggtatttttgtttatagaaatgagctttccaccaccccaccaaaa
ctacaacatgaattgacaacatggaaggaaaaaagaaccagaacttccca
ggcactgttttttttattattattcttaaaaaatactttaaaatgaaaat
ttgtttgtatttttatttacattttatatctttgtacatattgttagggt
cagccatttttaatgataacggatgaccaaaccagccttcagagcatctt
ctttcctacttcagattttacttgtggtgtgaccatgttcattataatct
caaaggagaaaaaaaaaccttgtaaaaaaagcaaaaaacaacaacagcaa
aaaaatcttattctgagcattccagtagcttttgtatgagatggttaaaa
aggccaaagataaaaaaattttttctctttctttcttttttcttttcttt
cttttttttttttttttctatgaagttgctctttatttttactttttttt
tttttatttttggcctgttgatgtatgtgtgaaaccatgtccacaataaa
ctggaattttattttgaaaaaaaaagacttatgatgacttgctgatagtc
ataaatagttctggagttgactgatggctgtccagatcatcttgggaact
atttcatctaacaatgctgaatgttcttccccaatgagaataataattcc
atttttgatctcttgatttgtttaatcctttacaggtttgattgt
gaattcccctctactggtaagcagatataagcccagaaacttagaatacc
caagatacaatttgcaaaacaaatgaaactcaagaagcaggaagaccaaa
ctgtggatacttctctccttcttagattggagaacaaaatacctattgat
gtagttacagagacaaaattctgagctgagaaggaaggaaggaccatcca
gagactgcctcaatcagggatctgtcacataaacagccaccaaaccgaga
cactattacatatgccagaaagattttgctgacaggaccctgacatagct
ctctcttgtgaggctgtgccagtgcctggcaaatacagaagtggatgctc
atagtcatctattggatggaacacagggcccctaaagaaagagctagaga
aagtacccaaggaataacaatatgaaggaaccagtacccccaccccccac
cccagagctgtgtctctagtggcatatgtagcagaggatcacctagttgg
ccatcaatgggaggagagacccttggtcttgtaaagatcatatgcctcaa
agtagttttaatgtgtattttcataatggtttaggatgacagaatagatt
ccctaattttatgtacatagtatgtaattttatttatcttttaataattt
cttgtttgattgattgacccattaacaatgatcgatgtcttcatttgatc
tattaattagtctaattcttttatttccagatatctttaaatttcaactt
ttcaatttttttccattatcaatctacaatttaactgtgggactatgttc
tgtctaaactcaaagtttagggaaccttagctttttacaccattggagaa
atattagagggtattctatgcagtattgaagaaaatgtatatgttctaac
tagtgggatattttgtgccagagattttgtatttatcctcagatgcatga
aactcctttactttactgatagcttcgtgtatcctggaaaatgtaaccaa
ggttaacctccatagcattttggctttgaattgctcctagaataggtggc
aactttggtctttaaattcagcacctctggccagcaggaacctggattat
ttatttcctgggaggttatgacagataagtgatctttgactcattaattg
tcttccaaccaacaaatggcctgtttagaatgaattttattttttagaca
catatgtgtgacgtacacatcctctcttggagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_112281177_112282293
seq2: B6Ng01-123P07.b_48_1142 (reverse)

seq1  ACAATACAAAACTGTAAAAGATATTAAACAAATCAA-AGATCCAAAAATT  49
      ||||| |||| ||||||| |  |||||||||||||| |||||  |||| |
seq2  ACAAT-CAAACCTGTAAAGG--ATTAAACAAATCAAGAGATC--AAAAAT  45

seq1  GGAAAATTATTTATTCTTCATT-GAGTAGAACATTCAGCATTGTTAAGAT  98
      ||  ||||| |||||| ||||| | | |||||||||||||||||| ||||
seq2  GG--AATTA-TTATTC-TCATTGGGGAAGAACATTCAGCATTGTT-AGAT  90

seq1  GAAATAGTTTCCCAAGATGATCTGTACAGCCATCCAGTCAAACTCCAGAA  148
      ||||||| |||||||||||||||| |||||||| ||||| ||||||||||
seq2  GAAATAG-TTCCCAAGATGATCTGGACAGCCAT-CAGTC-AACTCCAGAA  137

seq1  ACTTATTTATGACTATCAGCAAGTTCATCATAAGTTCTTTTTTTTTTTCA  198
         |||||||||||||||||||| ||||||||||   | |||||||||||
seq2  --CTATTTATGACTATCAGCAAG-TCATCATAAG---TCTTTTTTTTTCA  181

seq1  AAATAAAATTCCAGTTTATTGTTGGACATTGTTTCACACATACATCAAAC  248
      ||||||||||||||||||||| ||||||| |||||||||||||||| |||
seq2  AAATAAAATTCCAGTTTATTG-TGGACATGGTTTCACACATACATC-AAC  229

seq1  AGGCCAAAAATAAAAAAAAAAAAAAGTAAAAATAAAGAGCAACTTCATAG  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAAAAT-AAAAAAAAAAAAAGTAAAAATAAAGAGCAACTTCATAG  278

seq1  AAAAAAAAAAAAAAAAGAAAAGAAAAGAAAAAAAGAAAGAAAGAGAAAAA  348
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAG-AAAGAAAAG-AAAAAAGAAAGAAAGAGAAAAA  326

seq1  ATTTTTTTATCTTTGGCCTTTTTAACCATCTCATACAAAAGCTACTGGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTATCTTTGGCCTTTTTAACCATCTCATACAAAAGCTACTGGAA  376

seq1  TGCTCAGAATAAGATTTTTTTGCTGTTGTTGTTTTTTGCTTTTTTTACAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGAATAAGATTTTTTTGCTGTTGTTGTTTTTTGCTTTTTTTACAA  426

seq1  GGTTTTTTTTTCTCCTTTGAGATTATAATGAACATGGTCACACCACAAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTCTCCTTTGAGATTATAATGAACATGGTCACACCACAAGT  476

seq1  AAAATCTGAAGTAGGAAAGAAGATGCTCTGAAGGCTGGTTTGGTCATCCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGAAGTAGGAAAGAAGATGCTCTGAAGGCTGGTTTGGTCATCCG  526

seq1  TTATCATTAAAAATGGCTGACCCTAACAATATGTACAAAGATATAAAATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTAAAAATGGCTGACCCTAACAATATGTACAAAGATATAAAATG  576

seq1  TAAATAAAAATACAAACAAATTTTCATTTTAAAGTATTTTTTAAGAATAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAAATACAAACAAATTTTCATTTTAAAGTATTTTTTAAGAATAA  626

seq1  TAATAAAAAAAACAGTGCCTGGGAAGTTCTGGTTCTTTTTTCCTTCCATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAAAAACAGTGCCTGGGAAGTTCTGGTTCTTTTTTCCTTCCATG  676

seq1  TTGTCAATTCATGTTGTAGTTTTGGTGGGGTGGTGGAAAGCTCATTTCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATTCATGTTGTAGTTTTGGTGGGGTGGTGGAAAGCTCATTTCTA  726

seq1  TAAACAAAAATACCGATGAAAAATGTTGAAAATGAAGCATTACCTAATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAAATACCGATGAAAAATGTTGAAAATGAAGCATTACCTAATGT  776

seq1  AAAGATTTTGAAAAATAAAGAACTAATATTTCAGTTCAGAATAGTGCTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTTGAAAAATAAAGAACTAATATTTCAGTTCAGAATAGTGCTAA  826

seq1  GAGGTGGCTTTATGAACATGACAAAATACAAAACCAAGAAGGGGCTACAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGCTTTATGAACATGACAAAATACAAAACCAAGAAGGGGCTACAC  876

seq1  ACACCATGTCCTCAATTCAGACAGACAGACACCTGCTAATAAACTAATAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGTCCTCAATTCAGACAGACAGACACCTGCTAATAAACTAATAC  926

seq1  ACAATATGTAGCATAATTACATTTGCAATTCAAACCCATCAAAATTTTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATGTAGCATAATTACATTTGCAATTCAAACCCATCAAAATTTTAT  976

seq1  AAGATAACATAACTGAAAATTGATATACCCACATTTGTAATTGTTTCTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAACATAACTGAAAATTGATATACCCACATTTGTAATTGTTTCTTA  1026

seq1  ATCGCAACTCCAAATCAGTACAGTTTTAAAAAAAGGAAAAGAAAAGAAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCAACTCCAAATCAGTACAGTTTTAAAAAAAGGAAAAGAAAAGAAAA  1076

seq1  GAAATATAAGATAGAATTC  1117
      |||||||||||||||||||
seq2  GAAATATAAGATAGAATTC  1095

seq1: chr3_112097971_112099099
seq2: B6Ng01-123P07.g_157_1303

seq1  AGGAAGACCAAACTGTGGATACTTCTCTCCTTCTTAGATTGGAGAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACCAAACTGTGGATACTTCTCTCCTTCTTAGATTGGAGAACAAA  50

seq1  ATACCTATTGATGTAGTTACAGAGACAAAATTCTGAGCTGAGAAGGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTATTGATGTAGTTACAGAGACAAAATTCTGAGCTGAGAAGGAAGG  100

seq1  AAGGACCATCCAGAGACTGCCTCAATCAGGGATCTGTCACATAAACAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCATCCAGAGACTGCCTCAATCAGGGATCTGTCACATAAACAGCC  150

seq1  ACCAAACCGAGACACTATTACATATGCCAGAAAGATTTTGCTGACAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACCGAGACACTATTACATATGCCAGAAAGATTTTGCTGACAGGAC  200

seq1  CCTGACATAGCTCTCTCTTGTGAGGCTGTGCCAGTGCCTGGCAAATACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACATAGCTCTCTCTTGTGAGGCTGTGCCAGTGCCTGGCAAATACAG  250

seq1  AAGTGGATGCTCATAGTCATCTATTGGATGGAACACAGGGCCCCTAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATGCTCATAGTCATCTATTGGATGGAACACAGGGCCCCTAAAGA  300

seq1  AAGAGCTAGAGAAAGTACCCAAGGAATAACAATATGAAGGAACCAGTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTAGAGAAAGTACCCAAGGAATAACAATATGAAGGAACCAGTACC  350

seq1  CCCACCCCCCACCCCAGAGCTGTGTCTCTAGTGGCATATGTAGCAGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCCACCCCAGAGCTGTGTCTCTAGTGGCATATGTAGCAGAGGA  400

seq1  TCACCTAGTTGGCCATCAATGGGAGGAGAGACCCTTGGTCTTGTAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAGTTGGCCATCAATGGGAGGAGAGACCCTTGGTCTTGTAAAGAT  450

seq1  CATATGCCTCAAAGTAGTTTTAATGTGTATTTTCATAATGGTTTAGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCCTCAAAGTAGTTTTAATGTGTATTTTCATAATGGTTTAGGATG  500

seq1  ACAGAATAGATTCCCTAATTTTATGTACATAGTATGTAATTTTATTTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATAGATTCCCTAATTTTATGTACATAGTATGTAATTTTATTTATC  550

seq1  TTTTAATAATTTCTTGTTTGATTGATTGACCCATTAACAATGATCGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAATTTCTTGTTTGATTGATTGACCCATTAACAATGATCGATGT  600

seq1  CTTCA-TTGATCTATTAATTAGTCTAATTCTTTTATTTCCAGATATCTTT  649
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTGATCTATTAATTAGTCTAATTCTTTTATTTCCAGATATCTTT  650

seq1  AAATTTCAACTTTTCAATTTTTTTCCATTATCAATCTACAATTTAACTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCAACTTTTCAATTTTTTTCCATTATCAATCTACAATTTAACTGT  700

seq1  GGGACTATGTTCTGTCTAAACTCAAAGTTTAGGGAACCTTAGCTTTTTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTATGTTCTGTCTAAACTCAAAGTTTAGGGAACCTTAGCTTTTTAC  750

seq1  ACCATTGGAGAAATATTAGAGGGTATTCTATGCAGTATTGAAGAAAATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGGAGAAATATTAGAGGGTATTCTATGCAGTATTGAAGAAAATGT  800

seq1  ATATTGTTCTAACTAGTGGAATATTTTGTGCCAGAGATTTTGTATTTATC  849
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATA-TGTTCTAACTAGTGGGATATTTTGTGCCAGAGATTTTGTATTTATC  849

seq1  CTCAGATGCAATGAAACTCCTTAACTTTACTGATAGCTTCAGTGTATCCT  899
      ||||||||| |||||||||||| ||||||||||||||||| |||||||||
seq2  CTCAGATGC-ATGAAACTCCTTTACTTTACTGATAGCTTC-GTGTATCCT  897

seq1  GGAAAATGTTACCAA-GTTAA-CTCCATAGCATTTTGGCTTTG-ATTGCC  946
      ||||||||| ||||| ||||| ||||||||||||||||||||| ||||| 
seq2  GGAAAATGTAACCAAGGTTAACCTCCATAGCATTTTGGCTTTGAATTGCT  947

seq1  TCTAG-ATAGGT-GCAAC-TTGTTCTTTAAATTCAGCA-CTCTGGCCAGC  992
       |||| |||||| ||||| ||| ||||||||||||||| |||||||||||
seq2  CCTAGAATAGGTGGCAACTTTGGTCTTTAAATTCAGCACCTCTGGCCAGC  997

seq1  AGGAAC--TGAT--TTTATTT-CTGGGAGGTTA-GTCAG-TAAGTGATTC  1035
      ||||||   |||  ||||||| ||||||||||| | ||| ||||||| ||
seq2  AGGAACCTGGATTATTTATTTCCTGGGAGGTTATGACAGATAAGTGA-TC  1046

seq1  TTTGGACATATTAAATTTATCTTC---ACAACAAAATG-CTGTTTAAGAT  1081
      ||| |||  |||||  || |||||    |||||||  | |||||||  ||
seq2  TTT-GACTCATTAA--TTGTCTTCCAACCAACAAATGGCCTGTTTAGAAT  1093

seq1  GAATTTAA--TTTTAGACCAAATTGTGCAAC-TACA---ACTCTCTTGGA  1125
      |||||| |  ||||||||  |  ||||  || ||||    ||||||||||
seq2  GAATTTTATTTTTTAGACACATATGTGTGACGTACACATCCTCTCTTGGA  1143

seq1  GATA  1129
      ||||
seq2  GATA  1147