BAC Information

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BAC

Clone NameB6Ng01-123P15
Chromosome3 (Build37)
Map Location 53,712,400 - 53,830,737
singlet/doubletdoublet
Overlap geneEG666444
Upstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1
Downstream geneLOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123P15.bB6Ng01-123P15.g
ACCDH927004DH927005
length1,163619
definitionDH927004|Mus musculus domesticus DNA, BAC clone: B6Ng01-123P15, 5' end.DH927005|Mus musculus domesticus DNA, BAC clone: B6Ng01-123P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,829,563 - 53,830,737)(53,712,400 - 53,713,018)
sequence
gaattcataagaattgtctattatttcttttacaatatgaaatctggaga
ttgggtaattattttcgatacatttcccgtgtgtgagatgctcaggaaaa
tggttttcctgtacttaagttgtggagaaaatggagcctttttccattta
taattttgtagcacaaatacttttgccttgaaggctaatgatgacttaga
tgttttgtcctctcagggctgtttgcaagtagaacactaacctgagcttg
ctcccttgggaaacactggggggagtccagctgcctggtggaactgggga
agaggtaacctcacttcactccgtttagccaagctgacagtgtgctctgc
aatacgtggtggtgagatacagaggtaaagagcttcagaagtttttgctt
ttgccaaattagatccacaccgacaatcgtatgtctactatttcattgga
tccaaaatagcatcctacggagaaaacaggcatgcccattctgcagcagg
aagtcaaggcttcggctactgtgtacatccccaagtggttatcaaagcac
agatggaatacaacccacaccaattaccccagcatcttccatacctgcgc
atgttaattgctatcccatgagggtgcgaggcctatcaaattagacttgc
ttaaagtgtttcgttctccaaaattaactgagaaggtagagtcttctttt
attagagtggcttttttcttcaaatcttatgacactaacaggaagcctgc
agaaattaataattgtgccagctatcaatcttctcatgcataaaattcaa
aatttgtttctctgcctacagatgaaatgtcatttttatcaaaagctaat
aatatgcacccacaagcatgcctgtcaacacccatgagccaatcgcaatc
tgcaaaagctaaaccgagtgcggtattaggttcatttgaatatggacaga
aaatcatagcgcattcagattgtgttaatatcaatataattcagttttct
ggtgaatgagagacttcacagagagaaggatatctcgtgctgtgtggagc
aggcttggcttacaaactgtcttctcgctctttccaggacctttcagttt
cttcttcttcagttcagcctgcaccaaggtgtcccagggattcactggtt
accgaaccctatc
gaattctcagcttctccagtaccatgtctgcttggaagttgccattttta
ccagcatggtgagaaaggattaagcctctgaaactgtaagccagccccaa
tttaaatgttttcctttataacagttgccatggtcatgatgtctcttcac
agtgataaaactcaaactaaggcagcttctgtggagacatctgataattt
caacaaaactattgttttaactttagctctgatgcttgtttagtcccttg
agattatgttttattgactgattaactgactctagattgtgtctcataga
ttcatagattgtgtctatgagggtgatccctggagtgggagttacgggag
attgtaaggcactcagtgcagttgtctagaagactagagatcactctaat
ctactgagccatttctacagtctctaggctgtgttctaaaagatgaatat
gatgaggtgtgttagagggactatagttcataggcctttagtgatgtaac
tgtaatgggatggaaagcattagaatcttgtgattagttttgaatccttt
gatcagagagagagggagagagagagagacagagagagagagagagagag
agagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53829563_53830737
seq2: B6Ng01-123P15.b_50_1212 (reverse)

seq1  GATAGGCTCCGGTAAACAAGTGAATACTCCTGGGACAACTTTGGGTGCAG  50
      |||||| | |||| ||| |||||||   ||||||||| |||  |||||||
seq2  GATAGGGTTCGGT-AACCAGTGAAT--CCCTGGGACACCTT--GGTGCAG  45

seq1  ACTGGAAACTGAAG-AGGAGAGACTGGAAAGGT-CTGGAAAGAGCGAGAA  98
       |||  |||||||| || ||| ||| ||||||| ||||||||||||||||
seq2  GCTG--AACTGAAGAAGAAGAAACT-GAAAGGTCCTGGAAAGAGCGAGAA  92

seq1  GACAGTTTGTAGCCCAGCCCTGCCTCCACACAGGCACGAGAATCTCCTTC  148
      |||||||||||  |||  |||| ||||||||| ||||||| || ||||||
seq2  GACAGTTTGTAAGCCAAGCCTG-CTCCACACA-GCACGAG-ATATCCTTC  139

seq1  TCTCTGTGAAGTCTCTCATTCACCAGAAAACTGAATTATATTGATATTTA  198
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTCTGTGAAGTCTCTCATTCACCAGAAAACTGAATTATATTGATA-TTA  188

seq1  ACACAATCTGAATGCGCTATGATTTTTCTGTCCATATTCAAATGAACCTA  248
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACACAATCTGAATGCGCTATGA-TTTTCTGTCCATATTCAAATGAACCTA  237

seq1  ATACCGCACTCGGTTTTAGCTTTTGCAGATTGCGATTGGCTCATGGGTGT  298
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATACCGCACTCGG-TTTAGCTTTTGCAGATTGCGATTGGCTCATGGGTGT  286

seq1  TGACAGGCATGCTTGTGGGTGCATATTATTAGCTTTTGATAAAAATGACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGCATGCTTGTGGGTGCATATTATTAGCTTTTGATAAAAATGACA  336

seq1  TTTCATCTGTAGGCAGAGAAACAAATTTTGAATTTTATGCATGAGAAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTGTAGGCAGAGAAACAAATTTTGAATTTTATGCATGAGAAGAT  386

seq1  TGATAGCTGGCACAATTATTAATTTCTGCAGGCTTCCTGTTAGTGTCATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCTGGCACAATTATTAATTTCTGCAGGCTTCCTGTTAGTGTCATA  436

seq1  AGATTTGAAGAAAAAAGCCACTCTAATAAAAGAAGACTCTACCTTCTCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGAAGAAAAAAGCCACTCTAATAAAAGAAGACTCTACCTTCTCAG  486

seq1  TTAATTTTGGAGAACGAAACACTTTAAGCAAGTCTAATTTGATAGGCCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTGGAGAACGAAACACTTTAAGCAAGTCTAATTTGATAGGCCTC  536

seq1  GCACCCTCATGGGATAGCAATTAACATGCGCAGGTATGGAAGATGCTGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTCATGGGATAGCAATTAACATGCGCAGGTATGGAAGATGCTGGG  586

seq1  GTAATTGGTGTGGGTTGTATTCCATCTGTGCTTTGATAACCACTTGGGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGGTGTGGGTTGTATTCCATCTGTGCTTTGATAACCACTTGGGGA  636

seq1  TGTACACAGTAGCCGAAGCCTTGACTTCCTGCTGCAGAATGGGCATGCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACAGTAGCCGAAGCCTTGACTTCCTGCTGCAGAATGGGCATGCCT  686

seq1  GTTTTCTCCGTAGGATGCTATTTTGGATCCAATGAAATAGTAGACATACG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCCGTAGGATGCTATTTTGGATCCAATGAAATAGTAGACATACG  736

seq1  ATTGTCGGTGTGGATCTAATTTGGCAAAAGCAAAAACTTCTGAAGCTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCGGTGTGGATCTAATTTGGCAAAAGCAAAAACTTCTGAAGCTCTT  786

seq1  TACCTCTGTATCTCACCACCACGTATTGCAGAGCACACTGTCAGCTTGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTGTATCTCACCACCACGTATTGCAGAGCACACTGTCAGCTTGGC  836

seq1  TAAACGGAGTGAAGTGAGGTTACCTCTTCCCCAGTTCCACCAGGCAGCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGGAGTGAAGTGAGGTTACCTCTTCCCCAGTTCCACCAGGCAGCTG  886

seq1  GACTCCCCCCAGTGTTTCCCAAGGGAGCAAGCTCAGGTTAGTGTTCTACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCCCCAGTGTTTCCCAAGGGAGCAAGCTCAGGTTAGTGTTCTACT  936

seq1  TGCAAACAGCCCTGAGAGGACAAAACATCTAAGTCATCATTAGCCTTCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACAGCCCTGAGAGGACAAAACATCTAAGTCATCATTAGCCTTCAA  986

seq1  GGCAAAAGTATTTGTGCTACAAAATTATAAATGGAAAAAGGCTCCATTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGTATTTGTGCTACAAAATTATAAATGGAAAAAGGCTCCATTTT  1036

seq1  CTCCACAACTTAAGTACAGGAAAACCATTTTCCTGAGCATCTCACACACG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAACTTAAGTACAGGAAAACCATTTTCCTGAGCATCTCACACACG  1086

seq1  GGAAATGTATCGAAAATAATTACCCAATCTCCAGATTTCATATTGTAAAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTATCGAAAATAATTACCCAATCTCCAGATTTCATATTGTAAAA  1136

seq1  GAAATAATAGACAATTCTTATGAATTC  1175
      |||||||||||||||||||||||||||
seq2  GAAATAATAGACAATTCTTATGAATTC  1163

seq1: chr3_53712400_53713018
seq2: B6Ng01-123P15.g_69_687

seq1  GAATTCTCAGCTTCTCCAGTACCATGTCTGCTTGGAAGTTGCCATTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTTCTCCAGTACCATGTCTGCTTGGAAGTTGCCATTTTTA  50

seq1  CCAGCATGGTGAGAAAGGATTAAGCCTCTGAAACTGTAAGCCAGCCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGGTGAGAAAGGATTAAGCCTCTGAAACTGTAAGCCAGCCCCAA  100

seq1  TTTAAATGTTTTCCTTTATAACAGTTGCCATGGTCATGATGTCTCTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTTTTCCTTTATAACAGTTGCCATGGTCATGATGTCTCTTCAC  150

seq1  AGTGATAAAACTCAAACTAAGGCAGCTTCTGTGGAGACATCTGATAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAAAACTCAAACTAAGGCAGCTTCTGTGGAGACATCTGATAATTT  200

seq1  CAACAAAACTATTGTTTTAACTTTAGCTCTGATGCTTGTTTAGTCCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAACTATTGTTTTAACTTTAGCTCTGATGCTTGTTTAGTCCCTTG  250

seq1  AGATTATGTTTTATTGACTGATTAACTGACTCTAGATTGTGTCTCATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGTTTTATTGACTGATTAACTGACTCTAGATTGTGTCTCATAGA  300

seq1  TTCATAGATTGTGTCTATGAGGGTGATCCCTGGAGTGGGAGTTACGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGATTGTGTCTATGAGGGTGATCCCTGGAGTGGGAGTTACGGGAG  350

seq1  ATTGTAAGGCACTCAGTGCAGTTGTCTAGAAGACTAGAGATCACTCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAGGCACTCAGTGCAGTTGTCTAGAAGACTAGAGATCACTCTAAT  400

seq1  CTACTGAGCCATTTCTACAGTCTCTAGGCTGTGTTCTAAAAGATGAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAGCCATTTCTACAGTCTCTAGGCTGTGTTCTAAAAGATGAATAT  450

seq1  GATGAGGTGTGTTAGAGGGACTATAGTTCATAGGCCTTTAGTGATGTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGTGTGTTAGAGGGACTATAGTTCATAGGCCTTTAGTGATGTAAC  500

seq1  TGTAATGGGATGGAAAGCATTAGAATCTTGTGATTAGTTTTGAATCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGGATGGAAAGCATTAGAATCTTGTGATTAGTTTTGAATCCTTT  550

seq1  GATCAGAGAGAGAGGGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAGAGAGAGGGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAG  600

seq1  AGAGAGAGAGAGAGAGAGA  619
      |||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGA  619