BAC Information

Click to search

BAC

Clone NameB6Ng01-124C05
Chromosome3 (Build37)
Map Location 63,398,722 - 63,399,881
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr149, LOC676984, LOC666967, Mme
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124C05.bB6Ng01-124C05.g
ACCDH927123DH927124
length1,2641,137
definitionDH927123|Mus musculus domesticus DNA, BAC clone: B6Ng01-124C05, 5' end.DH927124|Mus musculus domesticus DNA, BAC clone: B6Ng01-124C05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccctacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctggaagcattcccactaac
atcagggactaaaccagcctgcccattttctccctacctattcaacattg
cacttgaaatcctagccagagcaatttgacaacaaaaggatatcaagagg
atattaattggaaaggaagaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaacttccaccaaagaactcctaaacc
tgataaacagcttcagagaagtagctggatataaaattaactcaaacaag
tcaaggcctttctctacacaaagaataaacaggccgagaaagaaattagg
gaaacaacacccttctcaatagtcacaaataatataaaataccttggcgt
gactctaactaaggaagtgaaagatctgtatgataagaaattcaagtctc
tgaagaaagaaattaaagaagatctcagaaaatggaaagatctcccatgc
tcatggattggcaggatcaacattgtaaaaatggctatcctgcctaaagc
aatctacagattcaatgcaatccccatcaaaattccaactcaattcttca
acgaagtagaaagagcaatcagcaaattcatctggaataacaaaaaacct
aggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcac
catgcctgacctaaagctttacttcagagcaattgtgataaaaactgcat
ggtactggtatagtgacagacaagtagaccaatggaatagaattgaagac
ccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagc
taaaaccatccaatggaaaaagacagcattttcaacaaatagtgctggca
caactggtggttatcatgtagaagatgcaatttaatccatttctatctcc
ttgtactaaggtcaatctaagtggatcaaggaacttcccataaaaccgag
aactgaacttataaagagaaaggtggtaaagctggagaattgggccagga
aattcctgatagacagccaaggcttgtctgtagatctcgaatgtacatga
ctcatggatcgtcagctctgtaagcaagaaccctcatagcaaaggtctca
catggaggctcatcatcatggtacattcatataagtcgaggtctcgaaca
tagccttaaaggga
gaattcttcatgaaatgagaattatttgattcaaaacattagaattgcct
ccctggctcaggagcagcacagcagagcacaaccaggagactaggaagca
tctccaggcgttttacttcccagcctttggttattcccacccttggactg
atgctgcttcaaaaagcgtcttgagacgtgcaggggtgacatgggatgag
ctttggccctctatgttacacaggatgtggtacacagtcataaactagtc
cctagagggacatggaaatactccagtcatttgttctgacaaaagctgga
ttagacatttccaggtcatttggtgctcagtatggttcattagacacacc
agtgcccataggcacctggctcatatttttggagagggggccagtgtgca
agaaaggcatggttaaggcagctccatggggctaggtgtcaggaagtcat
gacattgcaacaggcactatttatttttatactacctgatattgtgaaca
acctagagtttcttagagggcaactatattccaaaattaaacaatttaat
ttttttgaatagagacatataagtgttattgctaaaaaaaactcttctat
taaaagtttcactttccttttaatttaatggatcaaatttgtgtcatctc
tactattttacagaagaagatctatataaactatcacatagtatatggta
ttgcatctctttagaatttttaaatgccagacaacctatggtgattgtat
gatatcacattggtttatattaaatgacatagcttggccatcttgaacac
tgagtagttcccaccgagtttcttttacattttgatctgcttttaagctg
atggttctgttatttttttcttcctagcttattcagggatgagaccattg
actttagtttgaagctgagttttcctttatgattttttttgatgaagttc
tagccacagtagatatggctgaacaagctaataatttagacactttcctc
caggcctctccttggtcccttttaaagtgttttacagcttatacttccaa
ggaccctactcagtagaaaccacctgaaacatttccaaatggttctctgg
tgaagccaacatgcgtgtccacttggtttggaagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_63398722_63399881
seq2: B6Ng01-124C05.g_69_1205 (reverse)

seq1  TTACTTCCCTTAAAACCATATGTGGACA-GCACTGTTGGCTAATCAAACC  49
      ||||||||    |||||  | ||||||| ||| ||||||||  ||  |||
seq2  TTACTTCC----AAACC--AAGTGGACACGCA-TGTTGGCT--TC--ACC  39

seq1  AAGAAACCATTTGGAAATTGTCTCA-GTTGTTTCTACTGAGTAGAGTACC  98
      |   ||||||||||||| ||| ||| || ||||||||||||||| || ||
seq2  AGAGAACCATTTGGAAA-TGTTTCAGGTGGTTTCTACTGAGTAGGGT-CC  87

seq1  TTGAAGATATAAAGCTGTATAAACAACTTTATAAAAAAAGAAACAAAGAA  148
      ||| |  ||| |||||||| |||| |||||     |||||  || |||  
seq2  TTGGAAGTAT-AAGCTGTA-AAAC-ACTTT-----AAAAGGGACCAAG-G  128

seq1  AAAGGGCTGGAGGAAAGTGTCTAAATTATTAGCTTTGTTCAGCCATATCT  198
      | ||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGAGGCCTGGAGGAAAGTGTCTAAATTATTAGC-TTGTTCAGCCATATCT  177

seq1  ACTGTGGCTAGAACTTCATCAAAAAAAATCATAAAAGGAAAAACTCAGCT  248
      |||||||||||||||||||||||||||||||||||  | |||||||||||
seq2  ACTGTGGCTAGAACTTCATCAAAAAAAATCATAAA--GGAAAACTCAGCT  225

seq1  TCAAACTAAAGTCAATGGTCTCATCCCTGAATAAGCTAGGAAGAAAAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCAAACTAAAGTCAATGGTCTCATCCCTGAATAAGCTAGGAAG-AAAAAA  274

seq1  ATAACAGAACCATCAGCTTAAAAGCAGATCAAAATGTAAAAGAAACTCGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGAACCATCAGCTTAAAAGCAGATCAAAATGTAAAAGAAACTCGG  324

seq1  TGGGAACTACTCAGTGTTCAAGATGGCCAAGCTATGTCATTTAATATAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTACTCAGTGTTCAAGATGGCCAAGCTATGTCATTTAATATAAA  374

seq1  CCAATGTGATATCATACAATCACCATAGGTTGTCTGGCATTTAAAAATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTGATATCATACAATCACCATAGGTTGTCTGGCATTTAAAAATTC  424

seq1  T-AAGAGATGCAATACCATATACTATGTGATAGTTTATATAGATCTTCTT  497
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGATGCAATACCATATACTATGTGATAGTTTATATAGATCTTCTT  474

seq1  CTGTAAAATAGTAGAGATGACACAAATTTGATCCATTAAATTAAAAGGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAATAGTAGAGATGACACAAATTTGATCCATTAAATTAAAAGGAA  524

seq1  AGTGAAACTTTTAATAGAAGAGTTTTTTTTAGCAATAACACTTATATGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAACTTTTAATAGAAGAGTTTTTTTTAGCAATAACACTTATATGTC  574

seq1  TCTATTCAAAAAAATTAAATTGTTTAATTTTGGAATATAGTTGCCCTCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCAAAAAAATTAAATTGTTTAATTTTGGAATATAGTTGCCCTCTA  624

seq1  AGAAACTCTAGGTTGTTCACAATATCAGGTAGTATAAAAATAAATAGTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCTAGGTTGTTCACAATATCAGGTAGTATAAAAATAAATAGTGC  674

seq1  CTGTTGCAATGTCATGACTTCCTGACACCTAGCCCCATGGAGCTGCCTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCAATGTCATGACTTCCTGACACCTAGCCCCATGGAGCTGCCTTA  724

seq1  ACCATGCCTTTCTTGCACACTGGCCCCCTCTCCAAAAATATGAGCCAGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCTTTCTTGCACACTGGCCCCCTCTCCAAAAATATGAGCCAGGT  774

seq1  GCCTATGGGCACTGGTGTGTCTAATGAACCATACTGAGCACCAAATGACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGGGCACTGGTGTGTCTAATGAACCATACTGAGCACCAAATGACC  824

seq1  TGGAAATGTCTAATCCAGCTTTTGTCAGAACAAATGACTGGAGTATTTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTCTAATCCAGCTTTTGTCAGAACAAATGACTGGAGTATTTCC  874

seq1  ATGTCCCTCTAGGGACTAGTTTATGACTGTGTACCACATCCTGTGTAACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTCTAGGGACTAGTTTATGACTGTGTACCACATCCTGTGTAACA  924

seq1  TAGAGGGCCAAAGCTCATCCCATGTCACCCCTGCACGTCTCAAGACGCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGCCAAAGCTCATCCCATGTCACCCCTGCACGTCTCAAGACGCTT  974

seq1  TTTGAAGCAGCATCAGTCCAAGGGTGGGAATAACCAAAGGCTGGGAAGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCAGCATCAGTCCAAGGGTGGGAATAACCAAAGGCTGGGAAGTA  1024

seq1  AAACGCCTGGAGATGCTTCCTAGTCTCCTGGTTGTGCTCTGCTGTGCTGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCCTGGAGATGCTTCCTAGTCTCCTGGTTGTGCTCTGCTGTGCTGC  1074

seq1  TCCTGAGCCAGGGAGGCAATTCTAATGTTTTGAATCAAATAATTCTCATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGCCAGGGAGGCAATTCTAATGTTTTGAATCAAATAATTCTCATT  1124

seq1  TCATGAAGAATTC  1160
      |||||||||||||
seq2  TCATGAAGAATTC  1137