BAC Information

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BAC

Clone NameB6Ng01-124C08
Chromosome3 (Build37)
Map Location 127,708,692 - 127,886,990
singlet/doubletdoublet
Overlap geneLOC100043382
Upstream geneLOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik
Downstream geneEG668828, LOC100043393, EG668831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124C08.bB6Ng01-124C08.g
ACCDH927129DH927130
length1,018475
definitionDH927129|Mus musculus domesticus DNA, BAC clone: B6Ng01-124C08, 5' end.DH927130|Mus musculus domesticus DNA, BAC clone: B6Ng01-124C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,708,692 - 127,709,724)(127,886,510 - 127,886,990)
sequence
gaattccaaggaaggccaaggtctgtgaccgtgttagaaacacaagcagc
ctgtctcagttgaccctcgcacaagagtcttcttatccactcaagatctg
ctttctttgccctcagggtcaccccaacagtgagagatgacataggggtg
tgctcttagggtcaccccaacagtgagagatggcatagggatcttccctc
agggtcaccccaacagtgagagatgacataggggtgtgctcttagggtca
ccccaacagtgagagatggcatagggatctgccctcagggtcaccccaac
agtgaagggtaaaagggggatgctcaccctgcttttccgagttacacatt
cctctttctctgacagaggcagaacctactcttattgattcttcatcatt
tctcaattacagcgactcaatgactctgactgagaaactgctcagaagac
tagacctccaaatgccaccttccggggtgctttggcgtctgtgactttgc
ttggccttgcacactgagcacacttccacccgagttcttctcttgcaaag
ccatgcatttggactcattgatgtcaagtgatctggtggttacatggccc
tgtgactccaaacacatgtgctcctgaacacactaacttctctatgattc
ttccctttctttggatgagtcttagtgcccatactagatcctaattctgc
tttgccatgatgtttttttttttgaaacttctgtctttttattaaacaat
ctatcataggcattttctatatgaacaaatatctataacatcaatcaatt
tatatagttatttaccctaagattattattcacccatatgtttaaagtgt
ttccatatttctctgccataaacaggatatagtatacattcttctaaatt
aatttttacacacatctttatttcttttttcttttttaagttcctaactt
tctttttaaattttttatacgtattttcccaatacatttccaatgctaac
caaaagtccccacaccct
catgctctgaggtgaggccaaaccagtgcatcaccgctgccctggttaca
cacactttatggaaagtgtgatcaaattgaggtaactgttagttaacagt
gtacacactactttattctataggttgaatcatgttttaattcagtcctg
ttgtgagtcataagaaagtcatgtgtagatataggtctttctaataagta
tctaacatggagaagttgtattattttttcagataaaaactatattttaa
aaaaggaagcacatgaaccctgcagaatgaagccatatcaccccttacag
agcactccttaggaaaatgaattctgtcggaatctgtcacgcattctatc
acatgctctgaacttgctttaccaactcaaggcatactttcccacttagt
ctgaattggccatttctttacctgaagcaccacaaacttcacatttgccc
gtgtgtgtgtgtgtgtatgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_127708692_127709724
seq2: B6Ng01-124C08.b_45_1062

seq1  GAATTCCAAGGAAGGCCAAGGTCTGTGACCGTGTTAGAAACACAAGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGAAGGCCAAGGTCTGTGACCGTGTTAGAAACACAAGCAGC  50

seq1  CTGTCTCAGTTGACCCTCGCACAAGAGTCTTCTTATCCACTCAAGATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCAGTTGACCCTCGCACAAGAGTCTTCTTATCCACTCAAGATCTG  100

seq1  CTTTCTTTGCCCTCAGGGTCACCCCAACAGTGAGAGATGACATAGGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTGCCCTCAGGGTCACCCCAACAGTGAGAGATGACATAGGGGTG  150

seq1  TGCTCTTAGGGTCACCCCAACAGTGAGAGATGGCATAGGGATCTTCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAGGGTCACCCCAACAGTGAGAGATGGCATAGGGATCTTCCCTC  200

seq1  AGGGTCACCCCAACAGTGAGAGATGACATAGGGGTGTGCTCTTAGGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCACCCCAACAGTGAGAGATGACATAGGGGTGTGCTCTTAGGGTCA  250

seq1  CCCCAACAGTGAGAGATGGCATAGGGATCTGCCCTCAGGGTCACCCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACAGTGAGAGATGGCATAGGGATCTGCCCTCAGGGTCACCCCAAC  300

seq1  AGTGAAGGGTAAAAGGGGGATGCTCACCCTGCTTTTCCGAGTTACACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGGGTAAAAGGGGGATGCTCACCCTGCTTTTCCGAGTTACACATT  350

seq1  CCTCTTTCTCTGACAGAGGCAGAACCTACTCTTATTGATTCTTCATCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCTCTGACAGAGGCAGAACCTACTCTTATTGATTCTTCATCATT  400

seq1  TCTCAATTACAGCGACTCAATGACTCTGACTGAGAAACTGCTCAGAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTACAGCGACTCAATGACTCTGACTGAGAAACTGCTCAGAAGAC  450

seq1  TAGACCTCCAAATGCCACCTTCCGGGGTGCTTTGGCGTCTGTGACTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTCCAAATGCCACCTTCCGGGGTGCTTTGGCGTCTGTGACTTTGC  500

seq1  TTGGCCTTGCACACTGAGCACACTTCCACCCGAGTTCTTCTCTTGCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTGCACACTGAGCACACTTCCACCCGAGTTCTTCTCTTGCAAAG  550

seq1  CCATGCATTTGGACTCATTGATGTCAAGTGATCTGGTGGTTACATGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATTTGGACTCATTGATGTCAAGTGATCTGGTGGTTACATGGCCC  600

seq1  TGTGACTCCAAACACATGTGCTCCTGAACACACTAACTTCTCTATGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCCAAACACATGTGCTCCTGAACACACTAACTTCTCTATGATTC  650

seq1  TTCCCTTTCTTTGGATGAGTCTTAGTGCCCATACTAGATCCTAATTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTCTTTGGATGAGTCTTAGTGCCCATACTAGATCCTAATTCTGC  700

seq1  TTTGCCATGATGTTTTTTTTTTTGAAACTTCTGTCTTTTTATTAAACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATGATGTTTTTTTTTTTGAAACTTCTGTCTTTTTATTAAACAAT  750

seq1  CTATCATAGGCATTTTCTATATGAACAAATATCTATAACATCAATCAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATAGGCATTTTCTATATGAACAAATATCTATAACATCAATCAATT  800

seq1  TATATAGTTATTTACCCTAAGATTATTATTCACCCATATGTTTAAAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTTATTTACCCTAAGATTATTATTCACCCATATGTTTAAAGTGT  850

seq1  TTCCAATATTTCTCTGCCATAAACAGGATATAGTATACATTCTTCTAATT  900
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTCC-ATATTTCTCTGCCATAAACAGGATATAGTATACATTCTTCTAAAT  899

seq1  TAATTTTTACACACATCTTTATTTTTCTTTTTTTCTTTTTTTTTAGTTTC  950
      |||||||||||||||||||||  ||||||||    || |||||||  |||
seq2  TAATTTTTACACACATCTTTA--TTTCTTTT----TTCTTTTTTAAGTTC  943

seq1  CTAACTTTCTTTTTTTAAATTTTTTTATTACGTATTTTCCTCAATTACAT  1000
      |||||||||  ||||||||||||||   |||||||||||| ||| |||||
seq2  CTAACTTTC--TTTTTAAATTTTTT--ATACGTATTTTCC-CAA-TACAT  987

seq1  TTCCAATGCTATCCCAAAAGTCCCCCACACCCT  1033
      |||||||||||  |||||||| |||||||||||
seq2  TTCCAATGCTA-ACCAAAAGT-CCCCACACCCT  1018

seq1: chr3_127886510_127886990
seq2: B6Ng01-124C08.g_69_549 (reverse)

seq1  CACACACATACACACACACACACACGGGCAAATGTGAAGTTTGTGGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATACACACACACACACACGGGCAAATGTGAAGTTTGTGGTGCT  50

seq1  TCAGGTAAAGAAATGGCCAATTCAGACTAAGTGGGAAAGTATGCCTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAAAGAAATGGCCAATTCAGACTAAGTGGGAAAGTATGCCTTGAG  100

seq1  TTGGTAAAGCAAGTTCAGAGCATGTGATAGAATGCGTGACAGATTCCGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAAGCAAGTTCAGAGCATGTGATAGAATGCGTGACAGATTCCGAC  150

seq1  AGAATTCATTTTCCTAAGGAGTGCTCTGTAAGGGGTGATATGGCTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCATTTTCCTAAGGAGTGCTCTGTAAGGGGTGATATGGCTTCATT  200

seq1  CTGCAGGGTTCATGTGCTTCCTTTTTTAAAATATAGTTTTTATCTGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGGTTCATGTGCTTCCTTTTTTAAAATATAGTTTTTATCTGAAAA  250

seq1  AATAATACAACTTCTCCATGTTAGATACTTATTAGAAAGACCTATATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACAACTTCTCCATGTTAGATACTTATTAGAAAGACCTATATCTA  300

seq1  CACATGACTTTCTTATGACTCACAACAGGACTGAATTAAAACATGATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACTTTCTTATGACTCACAACAGGACTGAATTAAAACATGATTCA  350

seq1  ACCTATAGAATAAAGTAGTGTGTACACTGTTAACTAACAGTTACCTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAGAATAAAGTAGTGTGTACACTGTTAACTAACAGTTACCTCAAT  400

seq1  TTGATCACACTTTCCATAAAGTGTGTGTAACCAGGGCAGCGGTGATGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCACACTTTCCATAAAGTGTGTGTAACCAGGGCAGCGGTGATGCAC  450

seq1  TGGTTTGGCCTCACCTCAGAGCATGGAATTC  481
      |||||||||||||||||||||||||||||||
seq2  TGGTTTGGCCTCACCTCAGAGCATGGAATTC  481