BAC Information

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BAC

Clone NameB6Ng01-124P21
Chromosome3 (Build37)
Map Location 81,306,520 - 81,419,950
singlet/doubletdoublet
Overlap geneLOC229443
Upstream geneGria2, Glrb, EG626841, Pdgfc
Downstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124P21.bB6Ng01-124P21.g
ACCDH927754DH927755
length2681,174
definitionDH927754|Mus musculus domesticus DNA, BAC clone: B6Ng01-124P21, 5' end.DH927755|Mus musculus domesticus DNA, BAC clone: B6Ng01-124P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,306,520 - 81,306,787)(81,418,772 - 81,419,950)
sequence
tcatcagttttggcttggcttatatcttcaatccatggttaaaataatga
ctcagtgcttgtattttatggttgttcctgttttgttgttgttgttggtg
gtggtggtggtgttcttttttttaatctctaaactgttcacgatcatgat
gttatctaggtgctatctatttgccatgggtatcttcacttgccccttca
gtctttctcccatcctcactttgtatgggacaactgaatttagcattagg
ttcttctctgtttggtat
gaattcagtagctgcagtacttaatatctaatatttacatgttttaaata
ttatatatatagactttccattcgtagaaaaatgtaatcacttctacgcc
ctattagttaatttgtgtgactcccattaatgctaccctaatgaaacatg
tacaccagtagagtctgagttgcattccgactaagtacagtgagcacaga
gatgtaaatatgatactatctgttagattcctagaataaggtaattgtcc
aagtacatcctttgtttcttttgaccccaaattttgaagaaatgatgttc
cttgcttattttatagaaataagccataaattcaggccaaccattccact
acctgtattctttacaaaataactcatatttaatgtattacattgtttta
ttttttaaatagtccttgtcaatattgtgtgtgctctaccccagccttga
acggctggatcagaccttgtttatcacagttgctagctcacctatggtgg
agtctttcaacctaggtaaagtcctgccacttctgcagcttcctacaaga
agccactacctgctgaacagctgagcttgtcttcctgatgaggtcctggc
aatgtgtgtgtgtgtgtgtgtgtgtgtgcattttgcccaattatattcag
accttagaattaaaacattgagccttgatcagagaactttgtctttggct
cattctttttctcgctctccttgccatccatccccagctttcctttaagg
aaccctgtaatccttggcagtggaaggctacaattgtggccagaaccttg
ggttggtagaaagagacctagagtaagagacacaatagcttaaaggcact
tttatgtgaagctaatggtgtaaatatttgcttttgtttagaaaattaat
ttagctgccaaggaaagatgtgaagttcatagggacacatggcccttcag
tacaaccgaagtgagtgaatggaatgtctgtcatattcttttttcttgtt
gattgttttgttttgttttcagacagggttttctctgtatagcctggctg
acaatgggactcaatttgtgaaacaggctgggcttgatctcagaaatcgc
tgtccttcacctttacacgcggcccctggctgtcttccgaggactgaatt
aagggtgtacacaccattcccggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81306520_81306787
seq2: B6Ng01-124P21.b_52_319

seq1  TCATCAGTTTTGGCTTGGCTTATATCTTCAATCCATGGTTAAAATAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTTTTGGCTTGGCTTATATCTTCAATCCATGGTTAAAATAATGA  50

seq1  CTCAGTGCTTGTATTTTATGGTTGTTCCTGTTTTGTTGTTGTTGTTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCTTGTATTTTATGGTTGTTCCTGTTTTGTTGTTGTTGTTGGTG  100

seq1  GTGGTGGTGGTGTTCTTTTTTTTAATCTCTAAACTGTTCACGATCATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGGTGTTCTTTTTTTTAATCTCTAAACTGTTCACGATCATGAT  150

seq1  GTTATCTAGGTGCTATCTATTTGCCATGGGTATCTTCACTTGCCCCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTAGGTGCTATCTATTTGCCATGGGTATCTTCACTTGCCCCTTCA  200

seq1  GTCTTTCTCCCATCCTCACTTTGTATGGGACAACTGAATTTAGCACTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCTTTCTCCCATCCTCACTTTGTATGGGACAACTGAATTTAGCATTAGG  250

seq1  TTCTACACTGTTTGGCAT  268
      |||| | |||||||| ||
seq2  TTCTTCTCTGTTTGGTAT  268

seq1: chr3_81418772_81419950
seq2: B6Ng01-124P21.g_68_1241 (reverse)

seq1  GCCGGGAATGGTGGTGCACACCTTTAATCCCAGCACTCGGGAGGCAGGCA  50
      |||||||||||| ||| ||||| |||||  |||  ||||| || ||| ||
seq2  GCCGGGAATGGT-GTGTACACCCTTAAT-TCAGTCCTCGGAAGACAGCCA  48

seq1  GAGGCGCGGGGTGAAGGTGGGGGCAAGGCGATTTCTGAGTTCAAGGCCAG  100
      | |||   | || ||||||  || |  |||||||||||| ||||| ||||
seq2  GGGGCCGCGTGTAAAGGTGAAGG-ACAGCGATTTCTGAGATCAAGCCCAG  97

seq1  CCTGGTCTACAAAGTGAGTCCCA-TGTCAGCCAGGGCTATACAGAG-AAA  148
      |||| |  ||||| ||||||||| ||||||||| |||||||||||| |||
seq2  CCTGTTTCACAAATTGAGTCCCATTGTCAGCCA-GGCTATACAGAGAAAA  146

seq1  CCCTGTCTCGAAAAACAAAAACAAAAACAAAACAAACA--AAGAAAAAAG  196
      |||||||| |||||         |||||||||||| ||  ||||||||||
seq2  CCCTGTCT-GAAAA--------CAAAACAAAACAATCAACAAGAAAAAAG  187

seq1  AATATGACAGACATT-CATTCACTCACTTCGGTTGTACTG-AGGGCCATG  244
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  AATATGACAGACATTCCATTCACTCACTTCGGTTGTACTGAAGGGCCATG  237

seq1  TGT-CCTATGAGCTTCACATCTTTCCTTGGCAGCTAAATTAATTTTCTAA  293
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTATGAACTTCACATCTTTCCTTGGCAGCTAAATTAATTTTCTAA  287

seq1  ACAAAAGCAAATATTTACACCATTAGCTTCACATAAAAGTGCCTTTAAGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCAAATATTTACACCATTAGCTTCACATAAAAGTGCCTTTAAGC  337

seq1  TATTGTGTCTCTTACTCTAGGTCTCTTTCTACCAACCCAAGGTTCTGGCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTCTCTTACTCTAGGTCTCTTTCTACCAACCCAAGGTTCTGGCC  387

seq1  ACAATTGTAGCCTTCCACTGCCAAGGATTACAGGGTTCCTTAAAGGAAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTAGCCTTCCACTGCCAAGGATTACAGGGTTCCTTAAAGGAAAG  437

seq1  CTGGGGATGGATGGCAAGGAGAGCGAGAAAAAGAATGAGCC-AAGACAAA  492
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGGGGATGGATGGCAAGGAGAGCGAGAAAAAGAATGAGCCAAAGACAAA  487

seq1  GTTCTCTGATCAAGGCTCAATGTTTTAATTCTAAGGTCTGAATATAATTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGATCAAGGCTCAATGTTTTAATTCTAAGGTCTGAATATAATTG  537

seq1  GGCAAAATGCACACACACACACACACACACACACATTGCCAGGACCTCAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAATGCACACACACACACACACACACACACATTGCCAGGACCTCAT  587

seq1  CAGGAAGACAAGCTCAGCTGTTCAGCAGGTAGTGGCTTCTTGTAGGAAGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGACAAGCTCAGCTGTTCAGCAGGTAGTGGCTTCTTGTAGGAAGC  637

seq1  TGCAGAAGTGGCAGGACTTTACCTAGGTTGAAAGACTCCACCATAGGTGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGTGGCAGGACTTTACCTAGGTTGAAAGACTCCACCATAGGTGA  687

seq1  GCTAGCAACTGTGATAAACAAGGTCTGATCCAGCCGTTCAAGGCTGGGGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAACTGTGATAAACAAGGTCTGATCCAGCCGTTCAAGGCTGGGGT  737

seq1  AGAGCACACACAATATTGACAAGGACTATTTAAAAAATAAAACAATGTAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACACACAATATTGACAAGGACTATTTAAAAAATAAAACAATGTAA  787

seq1  TACATTAAATATGAGTTATTTTGTAAAGAATACAGGTAGTGGAATGGTTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAAATATGAGTTATTTTGTAAAGAATACAGGTAGTGGAATGGTTG  837

seq1  GCCTGAATTTATGGCTTATTTCTATAAAATAAGCAAGGAACATCATTTCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAATTTATGGCTTATTTCTATAAAATAAGCAAGGAACATCATTTCT  887

seq1  TCAAAATTTGGGGTCAAAAGAAACAAAGGATGTACTTGGACAATTACCTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTTGGGGTCAAAAGAAACAAAGGATGTACTTGGACAATTACCTT  937

seq1  ATTCTAGGAATCTAACAGATAGTATCATATTTACATCTCTGTGCTCACTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGAATCTAACAGATAGTATCATATTTACATCTCTGTGCTCACTG  987

seq1  TACTTAGTCGGAATGCAACTCAGACTCTACTGGTGTACATGTTTCATTAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTCGGAATGCAACTCAGACTCTACTGGTGTACATGTTTCATTAG  1037

seq1  GGTAGCATTAATGGGAGTCACACAAATTAACTAATAGGGCGTAGAAGTGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCATTAATGGGAGTCACACAAATTAACTAATAGGGCGTAGAAGTGA  1087

seq1  TTACATTTTTCTACGAATGGAAAGTCTATATATATAATATTTAAAACATG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTTTCTACGAATGGAAAGTCTATATATATAATATTTAAAACATG  1137

seq1  TAAATATTAGATATTAAGTACTGCAGCTACTGAATTC  1179
      |||||||||||||||||||||||||||||||||||||
seq2  TAAATATTAGATATTAAGTACTGCAGCTACTGAATTC  1174