BAC Information

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BAC

Clone NameB6Ng01-125B08
Chromosome3 (Build37)
Map Location 33,594,913 - 33,762,415
singlet/doubletdoublet
Overlap geneLOC100041058, Ttc14, Ccdc39
Upstream geneActl6a, Mrpl47, Ndufb5, Usp13, Pex2, EG545512
Downstream geneLOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125B08.bB6Ng01-125B08.g
ACCDH927823DH927824
length1,0141,064
definitionDH927823|Mus musculus domesticus DNA, BAC clone: B6Ng01-125B08, 5' end.DH927824|Mus musculus domesticus DNA, BAC clone: B6Ng01-125B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,594,913 - 33,595,939)(33,761,343 - 33,762,415)
sequence
gaattctattcctgaacactataaaatgtaagtaactagattcacacaca
caaaaaaaaacattcttagggcatttacatgggcattttttccatttagt
tttaaaaactacatacttagaggaaaaattatatctggcatttatacctt
attagttttacttatgaaatgtgatttattgagctataagtgttccttgc
tgcctatattatacagtcaaatccatattttaagccacacataacaaaga
tacacttttcttttattctacatttaaaaaactaaaaactaaccatagct
tttctattaacctggaactgtactccatgaaaattaagatccttagtggg
aaaatcagaagaaagccagcaattaaattatcactggtgaggcagaaact
ttaaattatgcatattatgataataaggaagggtaaccaagatttctcaa
aggagtcttgaagtttgaggttaccccacagtgcttttagaagcagccat
gcccctaccccaaaaccatttctttgcatgacaaaaatgaagtcattggc
attcagagagatgagccagtttttatcactcacattctttttttttttcc
attttttattaggtatttagctcatttacatttccaatgctataccaaaa
gtcccccatacccacccacccccactgccctacccacccactcccccttt
ttggccctggttttcccctgtactggggcatataaagtttgcgtgtccaa
tgggcctctctttccagtgatagccgattacgccatcttttgatacatat
gcagctagagccaagagctctagggtactggttagttcataatgttgttc
caccttatagggttgcagatccctttagctccttaggtacttttctctag
ctcttcattggggtgccctgggatccatcattagctgactgaagcaccac
ttctggtatgcagccccagcatagctcacagaaagctacatcgggtcttt
cataaatctgctag
gaattctttctctttctcgaaacatccatcttcaccatgtcactgtggag
gtggctgtctcatcttcacaggcatgatggaagttatgtttcttctgcct
agagcccttattcctttggggaatattgaaatcctattgctgagcacagt
atcgccccaactctagccacatgaccgaagcctggcacccctttatgcac
tttatggccactaagatgaacatgagctaactggagcccctccttgctgg
aagggagacaagaggctctttccttttgtgtgattaaatcggaagctgaa
agctattcatggccatgttctccaacatacatgggaattgcacatatgta
aggctacatgcagagagaatcagagcactgggagaagatgagacggagca
ctagagggcctgggcatcccagaccttattctaacaataaagcagacact
ctgagcttgttttgcttccatccaattacttagaattgtgcctgtcactt
caaagcgaagtccaggtccagcttaaatattttttcctgtaagaggcctt
tctgtactatgtctgtatagacctcagattacgcatagaaggcgtacaca
agtgtttacccattcgcaagcatctttgattcagcaacaccagccaagtg
tgaccccatgtctagctgtgctggatgtggaacttgactcccgctcctct
tcgcatggggccttgtagatgtaagagttttgaaaaatgtttattgaatt
gagttgccaaaggtcactaagagaagatgtttttctcctcattgtattcc
tgtatttctttctccatcctgcactaataattgattcataaatgatctaa
aatactaactgaaagaaacattatttctgggggaaaaagccatggagaac
atgagctgtatttgaagtggaaagctcacattttaaaataatgaacccaa
gccatgtctatcttacctctaatagcaagtacaatgggttatttgcattt
tctgtaattacacattttggaatgatctttccatgtggagtcatttgata
acaggatctaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_33594913_33595939
seq2: B6Ng01-125B08.b_47_1060

seq1  GAATTCTATTCCTGAACACTATAAAATGTAAGTAACTAGATTCACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTCCTGAACACTATAAAATGTAAGTAACTAGATTCACACACA  50

seq1  CAAAAAAAAACATTCTTAGGGCATTTACATGGGCATTTTTTCCATTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAACATTCTTAGGGCATTTACATGGGCATTTTTTCCATTTAGT  100

seq1  TTTAAAAACTACATACTTAGAGGAAAAATTATATCTGGCATTTATACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACTACATACTTAGAGGAAAAATTATATCTGGCATTTATACCTT  150

seq1  ATTAGTTTTACTTATGAAATGTGATTTATTGAGCTATAAGTGTTCCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTTACTTATGAAATGTGATTTATTGAGCTATAAGTGTTCCTTGC  200

seq1  TGCCTATATTATACAGTCAAATCCATATTTTAAGCCACACATAACAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATATTATACAGTCAAATCCATATTTTAAGCCACACATAACAAAGA  250

seq1  TACACTTTTCTTTTATTCTACATTTAAAAAACTAAAAACTAACCATAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTTCTTTTATTCTACATTTAAAAAACTAAAAACTAACCATAGCT  300

seq1  TTTCTATTAACCTGGAACTGTACTCCATGAAAATTAAGATCCTTAGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTAACCTGGAACTGTACTCCATGAAAATTAAGATCCTTAGTGGG  350

seq1  AAAATCAGAAGAAAGCCAGCAATTAAATTATCACTGGTGAGGCAGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGAAGAAAGCCAGCAATTAAATTATCACTGGTGAGGCAGAAACT  400

seq1  TTAAATTATGCATATTATGATAATAAGGAAGGGTAACCAAGATTTCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATGCATATTATGATAATAAGGAAGGGTAACCAAGATTTCTCAA  450

seq1  AGGAGTCTTGAAGTTTGAGGTTACCCCACAGTGCTTTTAGAAGCAGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTTGAAGTTTGAGGTTACCCCACAGTGCTTTTAGAAGCAGCCAT  500

seq1  GCCCCTACCCCAAAACCATTTCTTTGCATGACAAAAATGAAGTCATTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTACCCCAAAACCATTTCTTTGCATGACAAAAATGAAGTCATTGGC  550

seq1  ATTCAGAGAGATGAGCCAGTTTTTATCACTCACATTCTTTTTTTTTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGAGATGAGCCAGTTTTTATCACTCACATTCTTTTTTTTTTTCC  600

seq1  ATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAA  650

seq1  GTCCCCCATACCCACCCACCCCCACTGCCCTACCCACCCACTCCCCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCATACCCACCCACCCCCACTGCCCTACCCACCCACTCCCCCTTT  700

seq1  TTGGCCCTGGTTTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCTGGTTTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAA  750

seq1  TGGGCCTCTCTTTCCAGTGATAGCCGATTACGCCATCTTTTGATACATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTCTCTTTCCAGTGATAGCCGATTACGCCATCTTTTGATACATAT  800

seq1  GCAGCTAGAGCCAAGAGCTCCAGGGTACTGGTTAGTTCATAATGTTGTTC  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCAGCTAGAGCCAAGAGCTCTAGGGTACTGGTTAGTTCATAATGTTGTTC  850

seq1  CA-CTTATAGGGTTGCAGATCCCTTTAGCTCCTTAGGTAC-TTTCTCTAG  898
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CACCTTATAGGGTTGCAGATCCCTTTAGCTCCTTAGGTACTTTTCTCTAG  900

seq1  CTCCTCCATTGGGG-GCCCTGTGATCCATCCATTAGCTGACTGTGAGCAT  947
      || || |||||||| |||||| ||||||| |||||||||||||  |||| 
seq2  CT-CTTCATTGGGGTGCCCTGGGATCCAT-CATTAGCTGACTG-AAGCA-  946

seq1  CCACTTCTGTGTTTGCTAGGCCCCAGCATAGTCTCACAAGAGACAGCTAC  997
      ||||||||| || |||   |||||||||||| |||||   ||| ||||||
seq2  CCACTTCTG-GTATGC--AGCCCCAGCATAG-CTCAC---AGAAAGCTAC  989

seq1  ATCTGGGTCCTTTCGATAAAATCTTGCTAG  1027
      ||| |||| ||||| || ||||| ||||||
seq2  ATC-GGGT-CTTTC-AT-AAATC-TGCTAG  1014

seq1: chr3_33761343_33762415
seq2: B6Ng01-125B08.g_66_1129 (reverse)

seq1  GAATTAGATCCTGTTATC-AATGACTTCCACATGGAAAGATCATTCCAAA  49
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  GAATTAGATCCTGTTATCAAATGAC-TCCACATGGAAAGATCATTCCAAA  49

seq1  ATGTGTAATTAACCAAGAAAATGCAAATAAACCAATTTGTACCTGCTATT  99
      |||||||||||    ||||||||||||||| |||  |||||| ||||| |
seq2  ATGTGTAATTA---CAGAAAATGCAAATAACCCA--TTGTACTTGCTA-T  93

seq1  TAGAGGTAAGATAGACATGGCTTGGGTTCATTATTTTAAAATGTGAGCTT  149
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGAGGTAAGATAGACATGGCTTGGGTTCATTATTTTAAAATGTGAGC-T  142

seq1  TTCCACTTCAAATACAGCTCATGTTCTCCATGGCTTTTTCCCCCAGAAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTCAAATACAGCTCATGTTCTCCATGGCTTTTTCCCCCAGAAAT  192

seq1  AATGTTTTCTTTCAGTTAAGTATTTTAGATCATTTATGAATCAATTATTA  249
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATG-TTTCTTTCAGTT-AGTATTTTAGATCATTTATGAATCAATTATTA  240

seq1  GTGCAGGATGGAGAAAGAAATACAGGAATACAATGAGGAGAAAAACATCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGATGGAGAAAGAAATACAGGAATACAATGAGGAGAAAAACATCT  290

seq1  TCTCTTAGTGACCTTTGGCAACTCAATTCAATAAACATTTTTCAAAACTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAGTGACCTTTGGCAACTCAATTCAATAAACATTTTTCAAAACTC  340

seq1  TTACATCTACAAGGCCCCATGCGAAGAGGAGCGGGAGTCAAGTTCCACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTACAAGGCCCCATGCGAAGAGGAGCGGGAGTCAAGTTCCACAT  390

seq1  CCAGCACAGCTAGACATGGGGTCACACTTGGCTGGTGTTGCTGAATCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACAGCTAGACATGGGGTCACACTTGGCTGGTGTTGCTGAATCAAA  440

seq1  GATGCTTGCGAATGGGTAAACACTTGTGTACGCCTTCTATGCGTAATCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTGCGAATGGGTAAACACTTGTGTACGCCTTCTATGCGTAATCTG  490

seq1  AGGTCTATACAGACATAGTACAGAAAGGCCTCTTACAGGAAAAAATATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTATACAGACATAGTACAGAAAGGCCTCTTACAGGAAAAAATATTT  540

seq1  AAGCTGGACCTGGACTTCGCTTTGAAGTGACAGGCACAATTCTAAGTAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGACCTGGACTTCGCTTTGAAGTGACAGGCACAATTCTAAGTAAT  590

seq1  TGGATGGAAGCAAAACAAGCTCAGAGTGTCTGCTTTATTGTTAGAATAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAAGCAAAACAAGCTCAGAGTGTCTGCTTTATTGTTAGAATAAG  640

seq1  GTCTGGGATGCCCAGGCCCTCTAGTGCTCCGTCTCATCTTCTCCCAGTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGATGCCCAGGCCCTCTAGTGCTCCGTCTCATCTTCTCCCAGTGC  690

seq1  TCTGATTCTCTCTGCATGTAGCCTTACATATGTGCAATTCCCATGTATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTCTCTCTGCATGTAGCCTTACATATGTGCAATTCCCATGTATGT  740

seq1  TGGAGAACATGGCCATGAATAGCTTTCAGCTTCCGATTTAATCACACAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAACATGGCCATGAATAGCTTTCAGCTTCCGATTTAATCACACAAA  790

seq1  AGGAAAGAGCCTCTTGTCTCCCTTCCAGCAAGGAGGGGCTCCAGTTAGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAGCCTCTTGTCTCCCTTCCAGCAAGGAGGGGCTCCAGTTAGCT  840

seq1  CATGTTCATCTTAGTGGCCATAAAGTGCATAAAGGGGTGCCAGGCTTCGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCATCTTAGTGGCCATAAAGTGCATAAAGGGGTGCCAGGCTTCGG  890

seq1  TCATGTGGCTAGAGTTGGGGCGATACTGTGCTCAGCAATAGGATTTCAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGCTAGAGTTGGGGCGATACTGTGCTCAGCAATAGGATTTCAAT  940

seq1  ATTCCCCAAAGGAATAAGGGCTCTAGGCAGAAGAAACATAACTTCCATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCAAAGGAATAAGGGCTCTAGGCAGAAGAAACATAACTTCCATCA  990

seq1  TGCCTGTGAAGATGAGACAGCCACCTCCACAGTGACATGGTGAAGATGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGAAGATGAGACAGCCACCTCCACAGTGACATGGTGAAGATGGA  1040

seq1  TGTTTCGAGAAAGAGAAAGAATTC  1073
      ||||||||||||||||||||||||
seq2  TGTTTCGAGAAAGAGAAAGAATTC  1064