BAC Information

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BAC

Clone NameB6Ng01-125H15
Chromosome3 (Build37)
Map Location 84,350,979 - 84,486,163
singlet/doubletdoublet
Overlap geneArfip1, EG667788, EG627369, Tigd4, Tmem154
Upstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik
Downstream geneLOC624889, Fbxw7, Dear1, LOC100042237, LOC100042125, Pet112l, 9930021J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125H15.bB6Ng01-125H15.g
ACCDH928104DH928105
length1,1041,086
definitionDH928104|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H15, 5' end.DH928105|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,350,979 - 84,352,079)(84,485,066 - 84,486,163)
sequence
gaattcagaggcagagcaaaattaattgcactaggtcagggctgtagctc
agtggtagagactacgcttaccactcacaaggtctcagcctcaatcccag
cacaaatgcacacaaaaactgcacctccagcctcagtttccttctgagtc
gactgtccaccttcaggatgttaactgctctgctggacctaatgagacac
gccccgcatgggctcacgtgtctgaaccctggtcccagtggatggcactg
cttgaggaggttagggagcctgtatgaggcagagcctggggatgggcttt
agagtttacagcctcaccatacttcctgttctaaatttacacttcctgtg
tgtgggcagaaatttgatctgccagcttccggctccgacctctgggccag
gactccccacccacaatggactaacattctagagccatagccgaaataat
ctctcacttccacgagccctttctggtcatggtactttatcacagcaact
caaaatagcaaaacaacagcaaaatcaaaaccagcctcttaggaattaag
taccttttaaaaccagtgagatgctgctgctacattttaaaagaatgtac
taatatttataaataatattttaaagggtaaaatacacttttttcttatc
aaagtaaaataaaaactatataaaattatatgccaaaactgcaagataca
ttgtcattctggttactgacataaatgtttagggtttttcataggttgtc
tattagtgagctaagcagcaaagcttaaaccttgacaaaccagagccaca
gcctatccaataatcctcaaattattgggcaaaagtgtgccacgattctc
tacattaaccgaaagtaaagtattcttaccctattgtagccatgctcatg
agcatcgtcaacttctccattactagttactgggatttctgctgcagagt
ttttgggagaattcttgaagccatggcagacacctacatttaaaataata
aattaataaataaattaaataaataataataaataaataaataaatgttt
ttaagagaagagaaaaagccatactaatgccaaactataaaggcatattt
taaa
gaattcctcagattcacgttacaacagtaaaaatatctgttcacttataa
actacctggggatcctcactccaattcctacactgatccctaatcaccag
tgtgatggtattaggagagtggccccaggatgaaaagaagaaaatcagag
gtattcatattctctccctccgcctccctcttcctgccagacaccacact
cagcagtgtgcacacgcaaagtgggtgctctaccactgagcgaggtctgc
agacctgctttccttccctttgcctaccctcactgctgctgtgggtgctg
tcacctgcttcaggctaatctttcctgtttatttactcagaggtcttgct
cagcacccgcttgcctcagcttccggagcactgggatggcaggtctgtgt
cactgcactccacttcttgagactctatgaagagctaagccctgtctgta
ctctgccctctatctgcaccatctcattctgtgccctctacgcgtgcaga
gagatgcggtgacagacttcacatgacttgctcagtcacagagctcacga
agagagaagagtggggtccccggagggtcatgatggaacctgagacttta
tcttcgtagtgtgtctcccttcaatcagggggaaatatggtgctgagagt
catggaagtttggccatcaggcagagagcaagagagtggactctgggttc
ttgttcctcagcctagaacagacagtggctttgctggcacaagggtggat
aaggatggggaaggccagcattgtcgggttctggctgagacgcctcatcc
cagatgcaggcaggcagctctgcccagaaccccagtagctctctccaagg
ggagcagatgagccaagctccctctagtacaacacttattatccttgtct
ccactttgacctgtggcccagagaagagaaaatggggacagatacaggca
gtagatacgagagctctgcactggggctgtggaaggaagaagaaggtcca
ggcagccctagtggtgactctgtctttcagacccagcaggtggcctttag
tgaactattggagttaatgggtcgtcaggcttctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_84350979_84352079
seq2: B6Ng01-125H15.b_47_1150

seq1  GAATTCAGAGGCAGAGCAAAATTAATTGCACTAGGTCAGGGCTGTAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCAGAGCAAAATTAATTGCACTAGGTCAGGGCTGTAGCTC  50

seq1  AGTGGTAGAGACTACGCTTACCACTCACAAGGTCTCAGCCTCAATCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAGAGACTACGCTTACCACTCACAAGGTCTCAGCCTCAATCCCAG  100

seq1  CACAAATGCACACAAAAACTGCACCTCCAGCCTCAGTTTCCTTCTGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGCACACAAAAACTGCACCTCCAGCCTCAGTTTCCTTCTGAGTC  150

seq1  GACTGTCCACCTTCAGGATGTTAACTGCTCTGCTGGACCTAATGAGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCCACCTTCAGGATGTTAACTGCTCTGCTGGACCTAATGAGACAC  200

seq1  GCCCCGCATGGGCTCACGTGTCTGAACCCTGGTCCCAGTGGATGGCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGCATGGGCTCACGTGTCTGAACCCTGGTCCCAGTGGATGGCACTG  250

seq1  CTTGAGGAGGTTAGGGAGCCTGTATGAGGCAGAGCCTGGGGATGGGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGAGGTTAGGGAGCCTGTATGAGGCAGAGCCTGGGGATGGGCTTT  300

seq1  AGAGTTTACAGCCTCACCATACTTCCTGTTCTAAATTTACACTTCCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTACAGCCTCACCATACTTCCTGTTCTAAATTTACACTTCCTGTG  350

seq1  TGTGGGCAGAAATTTGATCTGCCAGCTTCCGGCTCCGACCTCTGGGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCAGAAATTTGATCTGCCAGCTTCCGGCTCCGACCTCTGGGCCAG  400

seq1  GACTCCCCACCCACAATGGACTAACATTCTAGAGCCATAGCCGAAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCCACCCACAATGGACTAACATTCTAGAGCCATAGCCGAAATAAT  450

seq1  CTCTCACTTCCACGAGCCCTTTCTGGTCATGGTACTTTATCACAGCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACTTCCACGAGCCCTTTCTGGTCATGGTACTTTATCACAGCAACT  500

seq1  CAAAATAGCAAAACAACAGCAAAATCAAAACCAGCCTCTTAGGAATTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGCAAAACAACAGCAAAATCAAAACCAGCCTCTTAGGAATTAAG  550

seq1  TACCTTTTAAAACCAGTGAGATGCTGCTGCTACATTTTAAAAGAATGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTAAAACCAGTGAGATGCTGCTGCTACATTTTAAAAGAATGTAC  600

seq1  TAATATTTATAAATAATATTTTAAAGGGTAAAATACACTTTTTTCTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTATAAATAATATTTTAAAGGGTAAAATACACTTTTTTCTTATC  650

seq1  AAAGTAAAATAAAAACTATATAAAATTATATGCCAAAACTGCAAGATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAATAAAAACTATATAAAATTATATGCCAAAACTGCAAGATACA  700

seq1  TTGTCATTCTGGTTACTGACATAAATGTTTAGGGTTTTTCATAGGTTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTCTGGTTACTGACATAAATGTTTAGGGTTTTTCATAGGTTGTC  750

seq1  TATTAGTGAGCTAAGCAGCAAAGCTT-AACCTTGACAAACCAGAGCCACA  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATTAGTGAGCTAAGCAGCAAAGCTTAAACCTTGACAAACCAGAGCCACA  800

seq1  GCCTATCCAATAATCCTCAAATTATT-GGCAAAAGTGTGCCACGATTCTC  848
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCCTATCCAATAATCCTCAAATTATTGGGCAAAAGTGTGCCACGATTCTC  850

seq1  TACATTAACCGAAAGTAAAGTATTCTTACCCTATTGTAGCCATGCTCATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAACCGAAAGTAAAGTATTCTTACCCTATTGTAGCCATGCTCATG  900

seq1  AGCATCGTCAACTTCTCCATTACTAGTTACTGGGATTTCTGCTGCAGAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCGTCAACTTCTCCATTACTAGTTACTGGGATTTCTGCTGCAGAGT  950

seq1  TTTTGGGAG-ATTCTTG-AGCCATGGCAGACACCTACATTTAAAATAAAT  996
      ||||||||| ||||||| |||||||||||||||||||||||||||| |||
seq2  TTTTGGGAGAATTCTTGAAGCCATGGCAGACACCTACATTTAAAAT-AAT  999

seq1  AAATAAATAAATAAA-TAAATAAATA--AATAAATAAATAAATAAATGTT  1043
      |||| |||||||||| ||||||||||  ||||||||||||||||||||||
seq2  AAATTAATAAATAAATTAAATAAATAATAATAAATAAATAAATAAATGTT  1049

seq1  TTTTAAAGAGAAGAGAAAAAGCCATACTAATGCCAAACTATAAAAGGCAT  1093
      |||  |||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTT--AAGAGAAGAGAAAAAGCCATACTAATGCCAAACTAT-AAAGGCAT  1096

seq1  ATTTTAAA  1101
      ||||||||
seq2  ATTTTAAA  1104

seq1: chr3_84485066_84486163
seq2: B6Ng01-125H15.g_66_1151 (reverse)

seq1  GGAG-AGCCTG-CAGCCCATTTAAACTCC-ATAGTGTCACTAAAGGCCAC  47
      |||| |||||| |  ||||||  |||||| ||||| ||||||||||||||
seq2  GGAGAAGCCTGACGACCCATT--AACTCCAATAGT-TCACTAAAGGCCAC  47

seq1  CTGCCTGGTCTTGAAAAGCAGAGTGCACCACCTAGGGCTGCCTGGACACT  97
      ||||  |||| |||||  |||||| ||||| |||||||||||||||| ||
seq2  CTGCTGGGTC-TGAAAGACAGAGT-CACCA-CTAGGGCTGCCTGGAC-CT  93

seq1  TCTCTCTTCCTTCCACAGCCCCAGTGGCAGAGCCTCTCGTTATTCTTACT  147
      ||| ||||||||||||||||||||| |||||| |||||| |||   ||||
seq2  TCT-TCTTCCTTCCACAGCCCCAGT-GCAGAG-CTCTCG-TAT--CTACT  137

seq1  GGCCTGTATCTGTCCCCATTTTCTCTTCTCTGGGGCCACAGGTC-AAGTG  196
       |||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  -GCCTGTATCTGTCCCCATTTTCTCTTCTCT-GGGCCACAGGTCAAAGTG  185

seq1  GAGACAAGGATAATAAGTGTTGTACTAGAGGGAGCTTGGCTCATCTGCTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGGATAATAAGTGTTGTACTAGAGGGAGCTTGGCTCATCTGCTC  235

seq1  CCCTTGGAGAGGAGCTACTGGGGTTCTGGGCAGAGCTGCCTGCCTTGCAT  296
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  CCCTTGGAGA-GAGCTACTGGGGTTCTGGGCAGAGCTGCCTGCC-TGCAT  283

seq1  CTGGGATGAGGCGTCTCAGCCAGAACCCGACAATGCTGGCCTTCCCCATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGAGGCGTCTCAGCCAGAACCCGACAATGCTGGCCTTCCCCATC  333

seq1  CTTATCCACCCTTGTGCCAGC-AAGCCACTGTCTGTTCTAGGCTGAGGAA  395
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTATCCACCCTTGTGCCAGCAAAGCCACTGTCTGTTCTAGGCTGAGGAA  383

seq1  CAAGAACCCAGAGTCCACTCTCTTGCTCTCTGCCTGATGGCCAAACTTCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCCAGAGTCCACTCTCTTGCTCTCTGCCTGATGGCCAAACTTCC  433

seq1  ATGACTCTCAGCACCATATTTCCCCCTGATTGAAGGGAGACACACTACGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCTCAGCACCATATTTCCCCCTGATTGAAGGGAGACACACTACGA  483

seq1  AGATAAAGTCTCAGGTTCCATCATGACCCTCCGGGGACCCCACTCTTCTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGTCTCAGGTTCCATCATGACCCTCCGGGGACCCCACTCTTCTC  533

seq1  TCTTCGTGAGCTCTGTGACTGAGCAAGTCATGTGAAGTCTGTCACCGCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGTGAGCTCTGTGACTGAGCAAGTCATGTGAAGTCTGTCACCGCAT  583

seq1  CTCTCTGCACGCGTAGAGGGCACAGAATGAGATGGTGCAGATAGAGGGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCACGCGTAGAGGGCACAGAATGAGATGGTGCAGATAGAGGGCA  633

seq1  GAGTACAGACAGGGCTTAGCTCTTCATAGAGTCTCAAGAAGTGGAGTGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAGACAGGGCTTAGCTCTTCATAGAGTCTCAAGAAGTGGAGTGCA  683

seq1  GTGACACAGACCTGCCATCCCAGTGCTCCGGAAGCTGAGGCAAGCGGGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACAGACCTGCCATCCCAGTGCTCCGGAAGCTGAGGCAAGCGGGTG  733

seq1  CTGAGCAAGACCTCTGAGTAAATAAACAGGAAAGATTAGCCTGAAGCAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAAGACCTCTGAGTAAATAAACAGGAAAGATTAGCCTGAAGCAGG  783

seq1  TGACAGCACCCACAGCAGCAGTGAGGGTAGGCAAAGGGAAGGAAAGCAGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCACCCACAGCAGCAGTGAGGGTAGGCAAAGGGAAGGAAAGCAGG  833

seq1  TCTGCAGACCTCGCTCAGTGGTAGAGCACCCACTTTGCGTGTGCACACTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGACCTCGCTCAGTGGTAGAGCACCCACTTTGCGTGTGCACACTG  883

seq1  CTGAGTGTGGTGTCTGGCAGGAAGAGGGAGGCGGAGGGAGAGAATATGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTGGTGTCTGGCAGGAAGAGGGAGGCGGAGGGAGAGAATATGAA  933

seq1  TACCTCTGATTTTCTTCTTTTCATCCTGGGGCCACTCTCCTAATACCATC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTGATTTTCTTCTTTTCATCCTGGGGCCACTCTCCTAATACCATC  983

seq1  ACACTGGTGATTAGGGATCAGTGTAGGAATTGGAGTGAGGATCCCCAGGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTGATTAGGGATCAGTGTAGGAATTGGAGTGAGGATCCCCAGGT  1033

seq1  AGTTTATAAGTGAACAGATATTTTTACTGTTGTAACGTGAATCTGAGGAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAAGTGAACAGATATTTTTACTGTTGTAACGTGAATCTGAGGAA  1083

seq1  TTC  1098
      |||
seq2  TTC  1086