BAC Information

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BAC

Clone NameB6Ng01-125K17
Chromosome7 (Build37)3 (Build37)
Map Location 46,648,803 - 46,649,91841,059,653 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618
Downstream geneEG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133, LOC100039050, EG668540, 4930558N11Rik, EG628161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125K17.bB6Ng01-125K17.g
ACCDH928241DH928242
length1,116157
definitionDH928241|Mus musculus domesticus DNA, BAC clone: B6Ng01-125K17, 5' end.DH928242|Mus musculus domesticus DNA, BAC clone: B6Ng01-125K17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,648,803 - 46,649,918)(41,059,653 - 41,059,737)
sequence
gaattctactcagctattaaaacagggatatcatgaaatttgcaggcata
cagatggaattagaaaataaatcctgtgtaagttaactaaacaccagaaa
gtcacacatagtatgtactcacttataagtgtgtattagccacaaaatac
agaatagctacaatccagtactcaaagaagctacgtaacacggagggcct
aagggaggattttgaatctttctcagaataggaaataaaatagatattgg
atagtatattgaaggttatatctttctcctcatactggtcccacactctt
aataccggtccaccaaatactagggagtatccagtacaaactctcaccac
tattgattaaccacacgttgctcactcttggagactaaaccaaataagct
tttcctccttaaggattatgtttactttgtccacagtagtttggaactaa
ctagtagaaattatgttttaccctacagatgtatgagaaaatctttccat
tactcccactcattctcttttcctgctccccttcttcctcacagttctca
gagaaaaagctgataattagcccacatatttatcgggagatatcaacaag
ttgaatttgaggaaatatgacctcgtcaccaattcaattttaatattaca
ctgtcttaccaattttctataaattgcagaattagcactttgttattgta
tgcaagaatatgtatcaaactgtgatagttttgtatatgctcagcccaag
aagtggcactattagaatgtgtggctctgttgtagtgtgtcactgtgggg
gtgggctttaagaacctcaccctagctgcctggcagccagtattctgcta
tccatcttcaaatgaagatgtaaactctcagctcctcctgtaccatgact
gcctggatgttgctatgctcatgccttgatcatactggtgaatctctgaa
cttataagcaagccccaattaaatgttgtccttataaggattgccttggt
catggtatctgtcacatcagtaataccctaactaagatcagaaattgtac
ctgcactattgtatgctgtgataggtctgacattggcttgtttgaaagat
aaggactgggacttgg
tttttttagctctcagccccattttttaatggggttattcgattttctgg
agtccatcttcttgagttctttatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_46648803_46649918
seq2: B6Ng01-125K17.b_50_1165 (reverse)

seq1  CCAAGTC-----CCTATTCTTCCAAACAAACACATGGTCAGACCTATCAC  45
      |||||||     |||  |||| ||||||| | ||  ||||||||||||||
seq2  CCAAGTCCCAGTCCTTATCTTTCAAACAAGC-CAATGTCAGACCTATCAC  49

seq1  AGCAATACACTAGTCGCAGGTACAAATTTCTG-TCTTAGTTAGGGTATTA  94
      ||| ||||| |||| |||||||| |||||||| |||||||||||||||||
seq2  AGC-ATACAATAGT-GCAGGTAC-AATTTCTGATCTTAGTTAGGGTATTA  96

seq1  CTGATGTGAACAGATACCATGACCAAGGCAATTCTTATAAGGACAACATT  144
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  CTGATGTG-ACAGATACCATGACCAAGGCAATCCTTATAAGGACAACATT  145

seq1  TAATTGGGGCTTGCTTATAAGTTCAGAGATTCACCCAGTATGATCAAGGC  194
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAATTGGGGCTTGCTTATAAGTTCAGAGATTCA-CCAGTATGATCAAGGC  194

seq1  ATGAGCATAGCAACATCCAGGCAGTCATGGTACAGGAGGAGCTGAGAGTT  244
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGAGCATAGCAACATCCAGGCAGTCATGGTACAGGAGGAGCTGAGAG-T  243

seq1  TTACATCTTCATTTGAAGATGGATAGCAGAATACTGGCTGCCAGGCAGCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTTCATTTGAAGATGGATAGCAGAATACTGGCTGCCAGGCAGCT  293

seq1  AGGGTGAGGTTCTTAAAGCCCACCCCCACAGTGACACACTACAACAGAGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGGTTCTTAAAGCCCACCCCCACAGTGACACACTACAACAGAGC  343

seq1  CACACATTCTAATAGTGCCACTTCTTGGGCTGAGCATATAC-AAACTATC  393
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACACATTCTAATAGTGCCACTTCTTGGGCTGAGCATATACAAAACTATC  393

seq1  ACAGTTTGATACATATTCTTGCATACAATAACAAAGTGCTAATTCTGCAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTGATACATATTCTTGCATACAATAACAAAGTGCTAATTCTGCAA  443

seq1  TTTATAGAAAATTGGTAAGACAGTGTAATATTAAAATTGAATTGGTGACG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGAAAATTGGTAAGACAGTGTAATATTAAAATTGAATTGGTGACG  493

seq1  AGGTCATATTTCCTCAAATTCAACTTGTTGATATCTCCCGATAAATATGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATATTTCCTCAAATTCAACTTGTTGATATCTCCCGATAAATATGT  543

seq1  GGGCTAATTATCAGCTTTTTCTCTGAGAACTGTGAGGAAGAAGGGGAGCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAATTATCAGCTTTTTCTCTGAGAACTGTGAGGAAGAAGGGGAGCA  593

seq1  GGAAAAGAGAATGAGTGGGAGTAATGGAAAGATTTTCTCATACATCTGTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAGAATGAGTGGGAGTAATGGAAAGATTTTCTCATACATCTGTA  643

seq1  GGGTAAAACATAATTTCTACTAGTTAGTTCCAAACTACTGTGGACAAAGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAACATAATTTCTACTAGTTAGTTCCAAACTACTGTGGACAAAGT  693

seq1  AAACATAATCCTTAAGGAGGAAAAGCTTATTTGGTTTAGTCTCCAAGAGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAATCCTTAAGGAGGAAAAGCTTATTTGGTTTAGTCTCCAAGAGT  743

seq1  GAGCAACGTGTGGTTAATCAATAGTGGTGAGAGTTTGTACTGGATACTCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACGTGTGGTTAATCAATAGTGGTGAGAGTTTGTACTGGATACTCC  793

seq1  CTAGTATTTGGTGGACCGGTATTAAGAGTGTGGGACCAGTATGAGGAGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTTGGTGGACCGGTATTAAGAGTGTGGGACCAGTATGAGGAGAA  843

seq1  AGATATAACCTTCAATATACTATCCAATATCTATTTTATTTCCTATTCTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAACCTTCAATATACTATCCAATATCTATTTTATTTCCTATTCTG  893

seq1  AGAAAGATTCAAAATCCTCCCTTAGGCCCTCCGTGTTACGTAGCTTCTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATTCAAAATCCTCCCTTAGGCCCTCCGTGTTACGTAGCTTCTTT  943

seq1  GAGTACTGGATTGTAGCTATTCTGTATTTTGTGGCTAATACACACTTATA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTGGATTGTAGCTATTCTGTATTTTGTGGCTAATACACACTTATA  993

seq1  AGTGAGTACATACTATGTGTGACTTTCTGGTGTTTAGTTAACTTACACAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTACATACTATGTGTGACTTTCTGGTGTTTAGTTAACTTACACAG  1043

seq1  GATTTATTTTCTAATTCCATCTGTATGCCTGCAAATTTCATGATATCCCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTTCTAATTCCATCTGTATGCCTGCAAATTTCATGATATCCCT  1093

seq1  GTTTTAATAGCTGAGTAGAATTC  1116
      |||||||||||||||||||||||
seq2  GTTTTAATAGCTGAGTAGAATTC  1116

seq1: chr3_41059653_41059737
seq2: B6Ng01-125K17.g_67_151 (reverse)

seq1  ATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCC  50
      |||||||| |||||||||||||| |||| ||||||||||| |||||||||
seq2  ATATATATAAAGAACTCAAGAAGATGGACTCCAGAAAATCGAATAACCCC  50

seq1  ATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  85
      |||||||||||||||| ||||||||| ||||||||
seq2  ATTAAAAAATGGGGCTGAGAGCTAAAAAAAGAATT  85