BAC Information

Click to search

BAC

Clone NameB6Ng01-125L20
Chromosome1 (Build37)3 (Build37)
Map Location 83,708,888 - 83,709,13141,059,533 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCol4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125L20.bB6Ng01-125L20.g
ACCDH928289DH928290
length244915
definitionDH928289|Mus musculus domesticus DNA, BAC clone: B6Ng01-125L20, 5' end.DH928290|Mus musculus domesticus DNA, BAC clone: B6Ng01-125L20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,708,888 - 83,709,131)(41,059,533 - 41,059,737)
sequence
catatatactgtgactatttccttaggcagaggtatctatgctacagcct
aatttaaaattgccaacaaatagtaataaaacagaatgatcataacagta
tactgaggtcagaatttttctggaattttccattttgtatcttttggact
gtagttgattgagagtaaaaatcttcagacaacaaaatctggatatggag
aaaaataataaagtaagaacagtaaggaagaaatagggagggag
gaattctttgtttaggtctgagccccatttttaatgggcttatttgattt
tctggagttcaccttcttgagttccttatatatattggatattagtcccc
tacctgatttaggataggtaaagatcctttcccaatctgttgatggcctt
tttgtcttattgatgttgtcttttgccttgcagaagctttgcaattttat
gaggtcaaacaagtcaatggcctttctgtccacaaaggataaacatgctg
agaaagtaattagggaatcaacacccttctcaatagtcacaaataatata
aaataccttggtgtgactctaactaaggcagtgaaagatctgtatgataa
gaacctcaagtctctgaagaaagaaattaaagaagatctcagaagatgga
aagatctcccatgctcatggattggcaggatcaatatagtaaaaatggct
atcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattcc
aactcaattcttcaacgaattagaaatagcaatctgcaaattcatctgga
ataacaaacaacctagaatagcaaaaactcttctcaaggataaaagaacc
tctggtggaatcaccatgcctgacctaagctgtactacagagcaattgtg
atttaaaaactgcatggtactggtatagcaacaggcaagtagaccagtag
aatagaattgaagacccagaaatgaacccacacacctatggtcacttgat
ctttgacaaggaagcaaaaaccacccagtggaaaaagacagcattttcaa
caatggtgctggcacaactggtggttattatgtagaagaatgcaaattga
tccattccaatctccttgtactaagggtcaaatctaagtggattaaggac
tccacataaaactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_83708888_83709131
seq2: B6Ng01-125L20.b_56_299 (reverse)

seq1  CTCCCTCCCTATTTCTTCCTTACTGTTCTTACTTTATTATTTTTCTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCTATTTCTTCCTTACTGTTCTTACTTTATTATTTTTCTCCAT  50

seq1  ATCCAGATTTTGTTGTCTGAAGATTTTTACTCTCAATCAACTACAGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATTTTGTTGTCTGAAGATTTTTACTCTCAATCAACTACAGTCCA  100

seq1  AAAGATACAAAATGGAAAATTCCAGAAAAATTCTGACCTCAGTATACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACAAAATGGAAAATTCCAGAAAAATTCTGACCTCAGTATACTGT  150

seq1  TATGATCATTCTGTTTTATTACTATTTGTTGGCAATTTTAAATTAGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCATTCTGTTTTATTACTATTTGTTGGCAATTTTAAATTAGGCTG  200

seq1  TAGCATAGATACCTCTGCCTAAGGAAATAGTCACAGTATATATG  244
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAGATACCTCTGCCTAAGGAAATAGTCACAGTATATATG  244

seq1: chr3_41059533_41059737
seq2: B6Ng01-125L20.g_68_272 (reverse)

seq1  GACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAA  50
      |||||||| ||| ||||||||||||||||||||||||||| | |||||||
seq2  GACCTCATAAAATTGCAAAGCTTCTGCAAGGCAAAAGACAACATCAATAA  50

seq1  GACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAAT  99
      |||||||||| || ||||||||||||||||||||||||||||||||||||
seq2  GACAAAAAGGCCATCAACAGATTGGGAAAGGATCTTTACCTATCCTAAAT  100

seq1  CAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGAT  149
      ||| ||||||||||||||||||||||||| | ||||||||||||||| | 
seq2  CAGGTAGGGGACTAATATCCAATATATATAAGGAACTCAAGAAGGTGAAC  150

seq1  TCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAA  199
      ||||||||||||||||| |||||| |||||||||||||||| ||||||||
seq2  TCCAGAAAATCAAATAAGCCCATT-AAAAATGGGGCTCAGACCTAAACAA  199

seq1  AGAATT  205
      ||||||
seq2  AGAATT  205