BAC Information

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BAC

Clone NameB6Ng01-125L21
Chromosome3 (Build37)
Map Location 89,496,480 - 89,652,081
singlet/doubletdoublet
Overlap geneLOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She
Upstream gene2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
Downstream geneIl6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125L21.bB6Ng01-125L21.g
ACCDH928291DH928292
length1,149843
definitionDH928291|Mus musculus domesticus DNA, BAC clone: B6Ng01-125L21, 5' end.DH928292|Mus musculus domesticus DNA, BAC clone: B6Ng01-125L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,650,988 - 89,652,081)(89,496,480 - 89,497,305)
sequence
gaattcaccatgtagaccaggctagcctttcaactcacagatccactcgc
ctctgcctcctgagttcagggatgaaaggtgtgagccaccgccagggttc
ttaagagtcagacatttttagagcagtgggagccagacacagtcacagag
cctataactgaaggagaaactcaaataaaagtgctgaggtagagaataag
atctacgacatttcccctggaggcaagcgctgttctccgtgctgtaatgc
tcaaagccattctgtgagataaatacttctgtgctccccaccaccaccat
gttaaagagaactgaagcacatggggcttaaggaagtgacccagaccagt
gtgcggcagggcctggagtgacagcaggaagctgggcgctggaagcctta
cactttgacaccacacttggatgggctccaagtggaagaaaaatggaaga
tgagctgactctggtggacaaggtcacttccagtggggagagctgcttga
gtgaagataggaaagcaggggacatatgtggcgcatcgccatccagggcc
agagaggaacatttcagaggcagaagtcagagaggaggaaggcactggga
gaagaccttagctggagaagggaaaagcccagaggaaggcagcactggag
tttttctctctgtctctctgtctctctgtctatctctcaaaagatatatg
tatttatgtatacaagtgatttgtctgcctgtctgcctgcacaccagaag
agggcgctgaattgtgagctgccatgtagttactggaatccaaactcacg
acctccgctgagccatctctctagccatatatatatatggatttcagatt
tatgtatttctaattatgtgtgtgattctgcagaaaccagaagagggcac
tagatcctcgggagcaccagttacagacagttctgagtcaatggactggg
gttctgggatcacactttgggtcctctgccaaagcagcactagttcttaa
cactgaaccttctctcagctccagcttggttgctttttaagattgtcagg
aatcatgcaggccagaatagcctggagatgcttaggtagagaaaagaatg
cttgaactctaagaatctccctgcctcagctctctcaaggtgctaggat
gaattccaggacagccagggctacacagagaaaccctgtctcgaaaaacc
aaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatat
atatatatatatatatatatatatattagagaggctgacacaaagatgcc
ttgtgcaaggtgcttcccccctcccccctccgccccaataggtctggcac
atagcacacagatcatagagccttgagttccccgtgaaggcaaaggcacg
tggcataggtggcttcccaaggaagatatgatacagcttgacagtgaaca
agtgaacagcaagtacctgctccctcctcgggacacatcctagagataag
atgtctggtgtcccaggctggggtcttggtggagatgggatggcctgtga
gtccaggcacctcagagcatgctatcaaaacatgtatgtcctatttgctc
ttacatctgcatccacaggagggtgtgtgatcctctggacctggaattat
aggtggttgtgagccaccatgtagattctgggaaccaaacctgggtcctc
tgcaagaacagccagtgcttgtagccattaagccatttctccagtccaag
aactcctgtgttctataaagaagtcaagtggagcgtatcaacaactctgt
ggatcagagatgattactaaaggaatagagcatcccagagacagatacct
tctcttgtgcaaggctctcttttggaatcagcatttgccctaggggatgg
gaaggaagactgccactttgaaagccttgttttatagctgcagtctggct
caaggtgggacatgaacaaagtcatgaagtcggctagtggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89650988_89652081
seq2: B6Ng01-125L21.b_102_1197 (reverse)

seq1  ATCCTAGCA-CTTGGGAG-GCTGAGGCA-GGAGAGTCCTAGAGTTCAAAG  47
      ||||||||| |||| ||| ||||||||| ||||| || |||||||| |||
seq2  ATCCTAGCACCTTGAGAGAGCTGAGGCAGGGAGATTCTTAGAGTTC-AAG  49

seq1  CCATC-TTTCTCTACCTAGCAATCTCCAGGCTATTCTGGGCTGCATGATT  96
      |  || ||||||||||||   |||||||||||||||||| ||||||||||
seq2  CATTCTTTTCTCTACCTAAGCATCTCCAGGCTATTCTGGCCTGCATGATT  99

seq1  CCCTGAC-ATCTTAAAAAGCAACCAAGCTGGAGCTGGAGAGAAGGTTCAG  145
       |||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  -CCTGACAATCTTAAAAAGCAACCAAGCTGGAGCT-GAGAGAAGGTTCAG  147

seq1  TGGTTAAGAACTAGTGCTGCTTTGGCAGAGGA-CCAAAGTGTGATTCCCA  194
      | |||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  T-GTTAAGAACTAGTGCTGCTTTGGCAGAGGACCCAAAGTGTGA-TCCCA  195

seq1  GAACCCCAGTCCATTGACTCAGAACTGTCTGTAACTGGTGCT-CCGGGGA  243
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  GAACCCCAGTCCATTGACTCAGAACTGTCTGTAACTGGTGCTCCCGAGGA  245

seq1  TCTAGTGCCCTCTTCTGGTTTCTGCAGAATCACACACATAATTAGAAATA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGCCCTCTTCTGGTTTCTGCAGAATCACACACATAATTAGAAATA  295

seq1  CATAAATCTGAAATCCATATATATATATGGCTAGAGAGATGGCTCAGCGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATCTGAAATCCATATATATATATGGCTAGAGAGATGGCTCAGCGG  345

seq1  AGGTCCTGAGTTTGGATTCCAGTAACTACATGGCAGCTCACAATTCAGCG  393
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGTGAGTTTGGATTCCAGTAACTACATGGCAGCTCACAATTCAGCG  395

seq1  CCCTCTTCTGGTGTGCAGGCAGACAGGCAGACAAATCACTTGTATACATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGGTGTGCAGGCAGACAGGCAGACAAATCACTTGTATACATA  445

seq1  AATACATATATCTTTTGAGAGATAGACAGAGAGACAGAGAGACAGAGAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATATATCTTTTGAGAGATAGACAGAGAGACAGAGAGACAGAGAGA  495

seq1  AAAACTCCAGTGCTGCCTTCCTCTGGGCTTTTCCCTTCTCCAGCTAAGGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCAGTGCTGCCTTCCTCTGGGCTTTTCCCTTCTCCAGCTAAGGT  545

seq1  CTTCTCCCAGTGCCTTCCTCCTCTCTGACTTCTGCCTCTGAAATGTTCCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCAGTGCCTTCCTCCTCTCTGACTTCTGCCTCTGAAATGTTCCT  595

seq1  CTCTGGCCCTGGATGGCGATGCGCCACATATGTCCCCTGCTTTCCTATCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCCTGGATGGCGATGCGCCACATATGTCCCCTGCTTTCCTATCT  645

seq1  TCACTCAAGCAGCTCTCCCCACTGGAAGTGACCTTGTCCACCAGAGTCAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAAGCAGCTCTCCCCACTGGAAGTGACCTTGTCCACCAGAGTCAG  695

seq1  CTCATCTTCCATTTTTCTTCCACTTGGAGCCCATCCAAGTGTGGTGTCAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTCCATTTTTCTTCCACTTGGAGCCCATCCAAGTGTGGTGTCAA  745

seq1  AGTGTAAGGCTTCCAGCGCCCAGCTTCCTGCTGTCACTCCAGGCCCTGCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAGGCTTCCAGCGCCCAGCTTCCTGCTGTCACTCCAGGCCCTGCC  795

seq1  GCACACTGGTCTGGGTCACTTCCTTAAGCCCCATGTGCTTCAGTTCTCTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGGTCTGGGTCACTTCCTTAAGCCCCATGTGCTTCAGTTCTCTT  845

seq1  TAACATGGTGGTGGTGGGGAGCACAGAAGTATTTATCTCACAGAATGGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGGTGGTGGTGGGGAGCACAGAAGTATTTATCTCACAGAATGGCT  895

seq1  TTGAGCATTACAGCACGGAGAACAGCGCTTGCCTCCAGGGGAAATGTCGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCATTACAGCACGGAGAACAGCGCTTGCCTCCAGGGGAAATGTCGT  945

seq1  AGATCTTATTCTCTACCTCAGCACTTTTATTTGAGTTTCTCCTTCAGTTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTATTCTCTACCTCAGCACTTTTATTTGAGTTTCTCCTTCAGTTA  995

seq1  TAGGCTCTGTGACTGTGTCTGGCTCCCACTGCTCTAAAAATGTCTGACTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCTGTGACTGTGTCTGGCTCCCACTGCTCTAAAAATGTCTGACTC  1045

seq1  TTAAGAACCCTGGCGGTGGCTCACACCTTTCATCCCTGAACTCAGGAGGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACCCTGGCGGTGGCTCACACCTTTCATCCCTGAACTCAGGAGGC  1095

seq1  A  1094
      |
seq2  A  1096

seq1: chr3_89496480_89497305
seq2: B6Ng01-125L21.g_66_893

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACC  50

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAA--ATATATATATATATATATATAT  98
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATAT  100

seq1  ATATATATATATATATATATATATATTAGAGAGGCTGACACAAAGATGCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATTAGAGAGGCTGACACAAAGATGCC  150

seq1  TTGTGCAAGGTGCTTCCCCCCTCCCCCCTCCGCCCCAATAGGTCTGGCAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAAGGTGCTTCCCCCCTCCCCCCTCCGCCCCAATAGGTCTGGCAC  200

seq1  ATAGCACACAGATCATAGAGCCTTGAGTTCCCCGTGAAGGCAAAGGCACG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACACAGATCATAGAGCCTTGAGTTCCCCGTGAAGGCAAAGGCACG  250

seq1  TGGCATAGGTGGCTTCCCAAGGAAGATATGATACAGCTTGACAGTGAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAGGTGGCTTCCCAAGGAAGATATGATACAGCTTGACAGTGAACA  300

seq1  AGTGAACAGCAAGTACCTGCTCCCTCCTCGGGACACATCCTAGAGATAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACAGCAAGTACCTGCTCCCTCCTCGGGACACATCCTAGAGATAAG  350

seq1  ATGTCTGGTGTCCCAGGCTGGGGTCTTGGTGGAGATGGGATGGCCTGTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGTGTCCCAGGCTGGGGTCTTGGTGGAGATGGGATGGCCTGTGA  400

seq1  GTCCAGGCACCTCAGAGCATGCTATCAAAACATGTATGTCCTATTTGCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGCACCTCAGAGCATGCTATCAAAACATGTATGTCCTATTTGCTC  450

seq1  TTACATCTGCATCCACAGGAGGGTGTGTGATCCTCTGGACCTGGAATTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTGCATCCACAGGAGGGTGTGTGATCCTCTGGACCTGGAATTAT  500

seq1  AGGTGGTTGTGAGCCACCATGTAGATTCTGGGAACCAAACCTGGGTCCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTGTGAGCCACCATGTAGATTCTGGGAACCAAACCTGGGTCCTC  550

seq1  TGCAAGAACAGCCAGTGCTTGTAGCCATTAAGCCATTTCTCCAGTCCAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAACAGCCAGTGCTTGTAGCCATTAAGCCATTTCTCCAGTCCAAG  600

seq1  AACTCCTGTGTTCTATAAAGAAGGTCAAGTGGAGCGTATCAACAACTCTG  648
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AACTCCTGTGTTCTATAAAGAA-GTCAAGTGGAGCGTATCAACAACTCTG  649

seq1  TGGATCAGAGATGATTACTAAAGGAATAGAGCATCCCAGAGACAGAAACC  698
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGGATCAGAGATGATTACTAAAGGAATAGAGCATCCCAGAGACAGATACC  699

seq1  -TCTCTTGTGCAAGGCTCTC-TTTGGAATCAGCA-TTGCCCTAGGGGATG  745
       ||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  TTCTCTTGTGCAAGGCTCTCTTTTGGAATCAGCATTTGCCCTAGGGGATG  749

seq1  GGAAGGAAGACTGCCACTTTGAAAGCCTTGGTTTTATAGCTGCAGTCCTG  795
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  GGAAGGAAGACTGCCACTTTGAAAGCCTT-GTTTTATAGCTGCAGT-CTG  797

seq1  GCTCAAGGTGGGACATGAACAAGGTCATGAA  826
      |||||||||||||||||||||| ||||||||
seq2  GCTCAAGGTGGGACATGAACAAAGTCATGAA  828