BAC Information

Click to search

BAC

Clone NameB6Ng01-126B11
Chromosome3 (Build37)
Map Location 72,643,528 - 72,644,756
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126B11.bB6Ng01-126B11.g
ACCDH928551DH928552
length1,208656
definitionDH928551|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B11, 5' end.DH928552|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccataaagggttcagagggtggggtatggagtctagcaggagtgc
ttgcttagcatgcctgaggtgaaggatgccttcccgtatagttggggaga
agtgtaaaaaacagaagaatgtaaagaagtcagaatgatgccaagatcag
tattatcaagtagtttgtgtatgtgtgtatgtccagaatcgggtactgtg
ctgatataaggcaaaactgttctccatttactaaaaatcaattgagtgca
gtcttaatgtctagggacatttaaaccgtgattgtcaaggagccagattt
agacaacattctcatggctgtttgtttcattcctgtttgcaggtaatatt
tcccagatgtctgcaacagtaagctttaaagtaatctcaaggtgaccttc
tacactgaacaatgtggatggctagtaaagactgagtcagatttaaccag
gatgtgccacgtaggtatagcaacaacgtcctcgttctttctatcctaca
ataacaccccaggacatataaaggggcatagataaaaccattttcccata
cacaggtatgtaaaattagtaatagcataggattattgttatataaatta
cattgtaccataatattttagtcacaaaatgacactacaaaaagtactaa
tgtccatttccactttcagcttaatagagtatgcagtaccatttttaata
gataatgtttagtaatttttgaaagtgaacaaatttttttaaaaaattaa
tatttttatttaaaacattactatttagttattcatttacttttttctct
tattaaaattttgaacctgctaccaaagcatgctagattggctgctctct
ggccctgtttctccatgagggtaatgaactattaattcagttgatgtgtg
tcatgctgtattttgctcccagtgatctgaggatgatagaaagaagcttt
taagtcctgtttagatatagattaaataaaaacagtggctagcaggcaca
ctcttttaatttttcctgcatttcaatttaatggttatgtgctagtagaa
aacacataaaaaaatctctcggttacaattttaagtattagtacgttgta
aaccattgacattcttaatactgtcagatcatttctgtttctagtcttac
acacaattctactagaatatacagcatttccctctatcaattccattcat
ggctatca

gaattctctaaagataaaactccactgtgaggaaatacttaaagaaatgt
ttaacatctttaattgtcagagaaatgcaaatcaacactcctttgtgact
tcatcttacctctggcataatggcaatagagtacagaacacataacagtt
caagttgtagaagatgcggggtgaagagaactgacatccattggtgatgg
gacgagaaatttgtaaagccatcatgaaaatgagcatagcatttactcat
aaagatgttggatccaatctatctcaagatccagcaatatcacttttgag
catattccctaagggcactctctcctaccacaacaacatttgctcaacca
ttttcttagaggctttactagtaatcacctgaactgtaaacaaactaaat
gtccctcaaccaaaacatgaatttaaaaaaaaaaaacttagaatacccaa
atacaatttgcaaaacacaagaaaatcaagaagaaggaagaccaacatgt
ggataattcattcctccttagaatagggaacaaaatacccatagaagtag
ttacagagactaagtttggagctaagatggaccatgcagagactacccca
cctggggatccatcccataattagccaccaaacacagacattattgcaca
ttacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72643528_72644756
seq2: B6Ng01-126B11.b_50_1257 (reverse)

seq1  TGATAGCCAATGAATGGGTATTGATAGAAGAGAAATGCTTGATA-TCTAG  49
      |||||||| |||||| || |||||||| || ||||||||  ||| |||||
seq2  TGATAGCC-ATGAAT-GGAATTGATAG-AGGGAAATGCTGTATATTCTAG  47

seq1  TAGGATTGGTGTTGTAAGACTAGAACAGGAAATGATCTGGACAGGTATTA  99
      ||| ||| ||| |||||||||||||   |||||||||| |||| ||||||
seq2  TAGAATT-GTG-TGTAAGACTAGAAACAGAAATGATCT-GACA-GTATTA  93

seq1  TAGAATGTCCATGTGTTTAACAACGTACTTAATACTTAAAAATTGTAAAC  149
       |||||||| ||| |||| ||||||||| |||||||| |||||||||| |
seq2  -AGAATGTCAATG-GTTT-ACAACGTAC-TAATACTT-AAAATTGTAACC  138

seq1  GAGGAAGATTGTTTTATGTGTTTTCTTACTAGCACAATAACCATTAAATT  199
      |||  ||||| |||||||||||||| ||||||||| ||||||||||||||
seq2  GAG--AGATTTTTTTATGTGTTTTC-TACTAGCAC-ATAACCATTAAATT  184

seq1  GAAATGCAGGAAAAAAATTAAAAAGAGGTGTGCCTGCTAGCCACTGTTTT  249
      |||||||||||||||   | |||||| ||||||||||||||||||| |||
seq2  GAAATGCAGGAAAAA---TTAAAAGA-GTGTGCCTGCTAGCCACTG-TTT  229

seq1  TTATTTAATCTAATATCTAAACAGGACTTAAAAGCTTCTTTCTATCATCC  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAATCT-ATATCTAAACAGGACTTAAAAGCTTCTTTCTATCATCC  278

seq1  TCAGATCACTGGGAGCAAAATACAGCATGACACACATCAACTGAATTAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCACTGGGAGCAAAATACAGCATGACACACATCAACTGAATTAAT  328

seq1  AGTTCATTACCCTCATGGAGAAACAGGGCCAGAGAGCAGCCAATCTAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTACCCTCATGGAGAAACAGGGCCAGAGAGCAGCCAATCTAGCA  378

seq1  TGCTTTGGTAGCAGGTTCAAAATTTTAATAAGAGAAAAAAGTAAATGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGTAGCAGGTTCAAAATTTTAATAAGAGAAAAAAGTAAATGAAT  428

seq1  AACTAAATAGTAATGTTTTAAATAAAAATATTAATTTTTTAAAAAAATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATAGTAATGTTTTAAATAAAAATATTAATTTTTTAAAAAAATTT  478

seq1  GTTCACTTTCAAAAATTACTAAACATTATCTATTAAAAATGGTACTGCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTTTCAAAAATTACTAAACATTATCTATTAAAAATGGTACTGCAT  528

seq1  ACTCTATTAAGCTGAAAGTGGAAATGGACATTAGTACTTTTTGTAGTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTAAGCTGAAAGTGGAAATGGACATTAGTACTTTTTGTAGTGTC  578

seq1  ATTTTGTGACTAAAATATTATGGTACAATGTAATTTATATAACAATAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGACTAAAATATTATGGTACAATGTAATTTATATAACAATAATC  628

seq1  CTATGCTATTACTAATTTTACATACCTGTGTATGGGAAAATGGTTTTATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTATTACTAATTTTACATACCTGTGTATGGGAAAATGGTTTTATC  678

seq1  TATGCCCCTTTATATGTCCTGGGGTGTTATTGTAGGATAGAAAGAACGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCCTTTATATGTCCTGGGGTGTTATTGTAGGATAGAAAGAACGAG  728

seq1  GACGTTGTTGCTATACCTACGTGGCACATCCTGGTTAAATCTGACTCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTGTTGCTATACCTACGTGGCACATCCTGGTTAAATCTGACTCAGT  778

seq1  CTTTACTAGCCATCCACATTGTTCAGTGTAGAAGGTCACCTTGAGATTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTAGCCATCCACATTGTTCAGTGTAGAAGGTCACCTTGAGATTAC  828

seq1  TTTAAAGCTTACTGTTGCAGACATCTGGGAAATATTACCTGCAAACAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCTTACTGTTGCAGACATCTGGGAAATATTACCTGCAAACAGGA  878

seq1  ATGAAACAAACAGCCATGAGAATGTTGTCTAAATCTGGCTCCTTGACAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAAACAGCCATGAGAATGTTGTCTAAATCTGGCTCCTTGACAAT  928

seq1  CACGGTTTAAATGTCCCTAGACATTAAGACTGCACTCAATTGATTTTTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTTTAAATGTCCCTAGACATTAAGACTGCACTCAATTGATTTTTAG  978

seq1  TAAATGGAGAACAGTTTTGCCTTATATCAGCACAGTACCCGATTCTGGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAGAACAGTTTTGCCTTATATCAGCACAGTACCCGATTCTGGAC  1028

seq1  ATACACACATACACAAACTACTTGATAATACTGATCTTGGCATCATTCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACATACACAAACTACTTGATAATACTGATCTTGGCATCATTCTG  1078

seq1  ACTTCTTTACATTCTTCTGTTTTTTACACTTCTCCCCAACTATACGGGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTACATTCTTCTGTTTTTTACACTTCTCCCCAACTATACGGGAA  1128

seq1  GGCATCCTTCACCTCAGGCATGCTAAGCAAGCACTCCTGCTAGACTCCAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCTTCACCTCAGGCATGCTAAGCAAGCACTCCTGCTAGACTCCAT  1178

seq1  ACCCCACCCTCTGAACCCTTTATGGAATTC  1229
      ||||||||||||||||||||||||||||||
seq2  ACCCCACCCTCTGAACCCTTTATGGAATTC  1208


| Home | SequenceCutter | Blast | Download |