BAC Information

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BAC

Clone NameB6Ng01-126C04
Chromosome3 (Build37)
Map Location 51,573,033 - 51,696,748
singlet/doubletdoublet
Overlap geneMaml3
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126C04.bB6Ng01-126C04.g
ACCDH928585DH928586
length1,034998
definitionDH928585|Mus musculus domesticus DNA, BAC clone: B6Ng01-126C04, 5' end.DH928586|Mus musculus domesticus DNA, BAC clone: B6Ng01-126C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,695,716 - 51,696,748)(51,573,033 - 51,574,045)
sequence
gaattccttctggggatggttaaagaaaagatgactacctttaatgtttt
acaaaggggcccagggtttaatttatgcatttagcataatgacaaaactc
actttttaatctttttaccaatattttgtgtgaatgtgtgtgaggggtat
atgtaggtgagtgtacctctgtgttttggcccctgtggaaatcagaggtc
aatgtcagggattggcctcaatcatgatgcttttttaagacaggatctct
cgctgaccctacaggcagattcactgatttggctagactggccagccagc
aaacaccagggttctgccagacactgactcccccaactttgagtttacag
gctcccccacaccaggcattatttgatatgggtgctgggactctgaattc
agatctacatacttccgtgtcaagtgcatttccagctgagccatcccaca
gtctgcaatatctctttgctatcaaggtaattattccaaaggacacgaaa
acattggttttcagtgacgaagcatctgtgttcctaaacaaggaagggag
aagagagtaaagaaagctcagaaactgaacttctcccagatgttcctgtg
ggctttccccaccccagtaactcagccttgaaaatctcagaggttagttc
tgacatgccagtttctagcaagtttttggtcctcaggaagtggtggtctg
agtggatgctgaagcaaatcacagttaactttcccaaagatagattggta
caaagatgttcacctctgtgtccatgtgagttactgaagtctgagctcaa
acttctccgagagaaagaaacaatggagtgtttgcttctcagtcaatagc
actcatgtggtggagttccaagcccagcatgtctgacgctgaatatgtcg
aataaccatgcaggattacagtttcagataagattggcgaaggtatgtat
aatttgttttccatccgctatccaaacgctcgactaccatctagttttaa
aaggaaagttattttggctcgtatcctgaaggta
gaattcagaataaacctttcctaactatgagtcgctcatctctggtatct
tgccacatcgattagaaggccaaataagacaagaggccctcatccccgga
agatgatgtccaagaggcaaaacggagtcagaaaggcctctggttcactt
gtagctgaaagcttgctgctccacctttaatttttgaaaggaatgggaga
taatgactccaatatggaagactggtttataaatagccgtttgcctcaaa
tgagtcagaagcttggagcgctaagctgtaaacagcaccaatctcgcttg
ttttgcaagcactgtcctggtgagtacaggcaggctggtggactgcttta
gtgtctgcaatattttttggcccctatttgcaaagctggaggaagtccag
gcagaaagaaaacatggaatgacattatgatgcctgtaacaagatgcatc
caggtggggcaggtgctcggaccagatctagtgttggggctgcagatgtc
tggatccattggcagataggccagtgtggtgtcacagggtctcatcatct
caagagtcttccttaagtggtaatgactgctaaggagcactaccaaatga
catggaagatactcagtcatacttgaacttcagatcagcttatatgctac
acttacacacataccaagaaaaatgacttgtttgagtttaattaggcacc
atttttttggcatgttttctgaatattcaatttgattcccaatgaaaccc
aaagcagaagaggggagagcggatcggaaaacacaggctcagaagacagt
gaacttttgtctccggtggtggtttgaacaataatggcttccaatagttg
taagtatttggaatacttgtcccagctggtgaacttttggggaatattag
agtgtggctttgtagaggagactccctgggggtgggcttgagatcaaagc
ccacacatccagttagttctctctgcttgtggtggatctccaagatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_51695716_51696748
seq2: B6Ng01-126C04.b_44_1077 (reverse)

seq1  TACCTTCAGGCTACGAGCCAAAATAAACTGTTCCTTTT-AAACTTGCTTG  49
      |||||||||| ||||||||||||| |||| |||||||| ||||| | | |
seq2  TACCTTCAGGATACGAGCCAAAAT-AACT-TTCCTTTTAAAACTAGATGG  48

seq1  TAGTCGAGCGATTTGTGATAGCGATTGGAAAAACAACTAATACATACCTC  99
      |||||||||| |||| |||||||  ||| ||||||| | |||||||||| 
seq2  TAGTCGAGCG-TTTG-GATAGCGGATGG-AAAACAAATTATACATACCTT  95

seq1  TGCCACTCTTATCTGAAACTGTAAATACTGCATGGTTA-TCGACATATTC  148
       |||| |||||||||||||||| ||| ||||||||||| |||||||||||
seq2  CGCCAATCTTATCTGAAACTGT-AATCCTGCATGGTTATTCGACATATTC  144

seq1  AGCGTCAGACATGCTGGGCTTGG-ACTCCACCACCTGAGTGCTATTGACT  197
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  AGCGTCAGACATGCTGGGCTTGGAACTCCACCACATGAGTGCTATTGACT  194

seq1  GAGAAGCAAACACTCCATTGTTTCTTTCTCTCGGAGAAGTTTGAGCTCAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAAACACTCCATTGTTTCTTTCTCTCGGAGAAGTTTGAGCTCAG  244

seq1  ACTTCAGTAACTCACATGGACACAGAGGTGAACATCTTTGTACCAATCTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTAACTCACATGGACACAGAGGTGAACATCTTTGTACCAATCTA  294

seq1  TCTTTGGG-AAGTT-ACTGTGATTTGCTTCAGCATCCACTCAGACCACCA  345
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  TCTTTGGGAAAGTTAACTGTGATTTGCTTCAGCATCCACTCAGACCACCA  344

seq1  CTTCCTGAGGACC-AAAACTTGCTAG-AACTGGCATGTCAGAACTAACCT  393
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  CTTCCTGAGGACCAAAAACTTGCTAGAAACTGGCATGTCAGAACTAACCT  394

seq1  CTGAGATTTTCAAGGCTGAGTTACTGGGGTGGGGAAAGCCCACAGGAACA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTTTCAAGGCTGAGTTACTGGGGTGGGGAAAGCCCACAGGAACA  444

seq1  TCTGGGAGAAGTTCAGTTTCTGAGCTTTCTTTACTCTCTTCTCCCTTCCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGAAGTTCAGTTTCTGAGCTTTCTTTACTCTCTTCTCCCTTCCT  494

seq1  TGTTTAGGAACACAGATGCTTCGTCACTGAAAACCAATGTTTTCGTGTCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGGAACACAGATGCTTCGTCACTGAAAACCAATGTTTTCGTGTCC  544

seq1  TTTGGAATAATTACCTTGATAGCAAAGAGATATTGCAGACTGTGGGATGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATAATTACCTTGATAGCAAAGAGATATTGCAGACTGTGGGATGG  594

seq1  CTCAGCTGGAAATGCACTTGACACGGAAGTATGTAGATCTGAATTCAGAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGGAAATGCACTTGACACGGAAGTATGTAGATCTGAATTCAGAG  644

seq1  TCCCAGCACCCATATCAAATAATGCCTGGTGTGGGGGAGCCTGTAAACTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACCCATATCAAATAATGCCTGGTGTGGGGGAGCCTGTAAACTC  694

seq1  AAAGTTGGGGGAGTCAGTGTCTGGCAGAACCCTGGTGTTTGCTGGCTGGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGGGGGAGTCAGTGTCTGGCAGAACCCTGGTGTTTGCTGGCTGGC  744

seq1  CAGTCTAGCCAAATCAGTGAATCTGCCTGTAGGGTCAGCGAGAGATCCTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAGCCAAATCAGTGAATCTGCCTGTAGGGTCAGCGAGAGATCCTG  794

seq1  TCTTAAAAAAGCATCATGATTGAGGCCAATCCCTGACATTGACCTCTGAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAAAGCATCATGATTGAGGCCAATCCCTGACATTGACCTCTGAT  844

seq1  TTCCACAGGGGCCAAAACACAGAGGTACACTCACCTACATATACCCCTCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGGGGCCAAAACACAGAGGTACACTCACCTACATATACCCCTCA  894

seq1  CACACATTCACACAAAATATTGGTAAAAAGATTAAAAAGTGAGTTTTGTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTCACACAAAATATTGGTAAAAAGATTAAAAAGTGAGTTTTGTC  944

seq1  ATTATGCTAAATGCATAAATTAAACCCTGGGCCCCTTTGTAAAACATTAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCTAAATGCATAAATTAAACCCTGGGCCCCTTTGTAAAACATTAA  994

seq1  AGGTAGTCATCTTTTCTTTAACCATCCCCAGAAGGAATTC  1033
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTCATCTTTTCTTTAACCATCCCCAGAAGGAATTC  1034

seq1: chr3_51573033_51574045
seq2: B6Ng01-126C04.g_65_1062

seq1  GAATTCAGAATAAACCTTTCCTAACTATGAGTCGCTCATCTCTGGTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATAAACCTTTCCTAACTATGAGTCGCTCATCTCTGGTATCT  50

seq1  TGCCACATCGATTAGAAGGCCAAATAAGACAAGAGGCCCTCATCCCCGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATCGATTAGAAGGCCAAATAAGACAAGAGGCCCTCATCCCCGGA  100

seq1  AGATGATGTCCAAGAGGCAAAACGGAGTCAGAAAGGCCTCTGGTTCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATGTCCAAGAGGCAAAACGGAGTCAGAAAGGCCTCTGGTTCACTT  150

seq1  GTAGCTGAAAGCTTGCTGCTCCACCTTTAATTTTTGAAAGGAATGGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGAAAGCTTGCTGCTCCACCTTTAATTTTTGAAAGGAATGGGAGA  200

seq1  TAATGACTCCAATATGGAAGACTGGTTTATAAATAGCCGTTTGCCTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTCCAATATGGAAGACTGGTTTATAAATAGCCGTTTGCCTCAAA  250

seq1  TGAGTCAGAAGCTTGGAGCGCTAAGCTGTAAACAGCACCAATCTCGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAGAAGCTTGGAGCGCTAAGCTGTAAACAGCACCAATCTCGCTTG  300

seq1  TTTTGCAAGCACTGTCCTGGTGAGTACAGGCAGGCTGGTGGACTGCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAAGCACTGTCCTGGTGAGTACAGGCAGGCTGGTGGACTGCTTTA  350

seq1  GTGTCTGCAATATTTTTTGGCCCCTATTTGCAAAGCTGGAGGAAGTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCAATATTTTTTGGCCCCTATTTGCAAAGCTGGAGGAAGTCCAG  400

seq1  GCAGAAAGAAAACATGGAATGACATTATGATGCCTGTAACAAGATGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGAAAACATGGAATGACATTATGATGCCTGTAACAAGATGCATC  450

seq1  CAGGTGGGGCAGGTGCTCGGACCAGATCTAGTGTTGGGGCTGCAGATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGGGCAGGTGCTCGGACCAGATCTAGTGTTGGGGCTGCAGATGTC  500

seq1  TGGATCCATTGGCAGATAGGCCAGTGTGGTGTCACAGGGTCTCATCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCATTGGCAGATAGGCCAGTGTGGTGTCACAGGGTCTCATCATCT  550

seq1  CAAGAGTCTTCCTTAAGTGGTAATGACTGCTAAGGAGCACTACCAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCTTCCTTAAGTGGTAATGACTGCTAAGGAGCACTACCAAATGA  600

seq1  CATGGAAGATACTCAGTCATACTTGAACTTCAGATCAGCTTATATGCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGATACTCAGTCATACTTGAACTTCAGATCAGCTTATATGCTAC  650

seq1  ACTTACACACATACCAAGAAAAATGACTTGTTTGAGTTTAATTAGGCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACACACATACCAAGAAAAATGACTTGTTTGAGTTTAATTAGGCACC  700

seq1  ATTTTTTTGGCATGTTTTCTGAATATTCAATTTGATTCCCAATGAAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGGCATGTTTTCTGAATATTCAATTTGATTCCCAATGAAACCC  750

seq1  AAAGGCAGAAGGAGGGGAGAGCGGATCGGAAAACACAGGCTCAG-AGACA  799
      ||| |||||| ||||||||||||||||||||||||||||||||| |||||
seq2  AAA-GCAGAA-GAGGGGAGAGCGGATCGGAAAACACAGGCTCAGAAGACA  798

seq1  GTGAACTTTTGTCTCCGGTGGTGGTTTGAACAATAATGGCTTCC-ATAGT  848
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGAACTTTTGTCTCCGGTGGTGGTTTGAACAATAATGGCTTCCAATAGT  848

seq1  TGTAAGTATTT-GAATACTTGGTCCCAGCTGGTGGAACTTTTGGGGAATA  897
      ||||||||||| |||||||| |||||||||||| ||||||||||||||| 
seq2  TGTAAGTATTTGGAATACTT-GTCCCAGCTGGT-GAACTTTTGGGGAAT-  895

seq1  ATTAGGAGGTGTGGCTTTGTAGGAGGAGACATCCCTGGGGGTGAGCTTTG  947
      |||||   ||||||||||||| |||||||| |||||||||||| || |||
seq2  ATTAG--AGTGTGGCTTTGTA-GAGGAGAC-TCCCTGGGGGTGGGC-TTG  940

seq1  AGGATTCAAAAAGCCCACACCATTCCCAGTTAGCTCTCTCTGCTTTGTGG  997
      | |||    |||||||||| |||  |||||||| ||||||||| ||||||
seq2  A-GAT---CAAAGCCCACA-CAT--CCAGTTAGTTCTCTCTGC-TTGTGG  982

seq1  TGGTATCT-CAAGATGA  1013
      ||| |||| ||||||||
seq2  TGG-ATCTCCAAGATGA  998