BAC Information

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BAC

Clone NameB6Ng01-126D20
Chromosome3 (Build37)
Map Location 35,371,052 - 35,371,695
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126D20.b
ACCDH928664
length646
definitionDH928664|Mus musculus domesticus DNA, BAC clone: B6Ng01-126D20, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgggcgggcggaatcctgaccacagaatccggtgagtccctc
gaatggcatgttgcaaaatgctggagcagtacgtcccaaaatcatggagg
cctgcaaaaacaaaaaacctgagccttggagcccaaagagacagcaggac
aaatgcctggtgatggcccgagtggactctgccaaggaacatttttaaaa
agaaaataactaaaatctgagttataattaacactactacctcaacagtg
actctttagttgtgacaaaggtatcgttaattcaatactgagggaaacta
gaaatgagccgagaactctcggtggtatattcagtctttcaacaaaccca
aaacatctcaaattaaaggtttattcttcaaaagcacagagactggctca
tagagagaggcatacacatacccttctgcacctcttattatgataatgcg
aacgaaaattgcatttactactcgatctagttactggtctgtgtctcaga
gacaaaggctccttcggggacagcgtgctccggctgtgggtgctcacaat
cgaccaccctgctccatccctcgcaaaaacctcagacacaacagttgatt
gacatgaatagacagtggtgatgacgatgtggagaggatggatctc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_35371052_35371695
seq2: B6Ng01-126D20.b_44_679

seq1  GAATTCTCTAGCCCCAGCGGAATCCTGAAGAGAGAATCCGGTGAGTCCCT  50
      ||||||||| |  |  ||||||||||||  | ||||||||||||||||||
seq2  GAATTCTCT-GGGCGGGCGGAATCCTGACCACAGAATCCGGTGAGTCCCT  49

seq1  CGAATGGCATGTTGCAAAATGCTGGAGCAGTACGTCCCAAAATCATCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  CGAATGGCATGTTGCAAAATGCTGGAGCAGTACGTCCCAAAATCATGGAG  99

seq1  GTCGCCAAAAACAAAAAACCTGAGCCTTGGAGCCCAAAGAGACAGCAGGA  150
      | |  |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAAAAACAAAAAACCTGAGCCTTGGAGCCCAAAGAGACAGCAGGA  149

seq1  CAAATGCAGTGTGATGCCCCGAGTGGACTCTGCGAAGGAACATTTTTAAA  200
      |||||||   |||||| |||||||||||||||| ||||||||||||||||
seq2  CAAATGCCTGGTGATGGCCCGAGTGGACTCTGCCAAGGAACATTTTTAAA  199

seq1  AAGAAAATAACTAAAATCTGAGTTATAATTAACACTACTACCTCAACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATAACTAAAATCTGAGTTATAATTAACACTACTACCTCAACAGT  249

seq1  GACTCTTTAGTTGTGACAAATGTATCATTAATTCAATAATAGGGGAAACT  300
      |||||||||||||||||||| ||||| ||||||||||| |  ||||||||
seq2  GACTCTTTAGTTGTGACAAAGGTATCGTTAATTCAATACTGAGGGAAACT  299

seq1  AGAAATGAGCCGAGAACTCTCGGTGGTATATTCAGTCTTTCAACAAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAGCCGAGAACTCTCGGTGGTATATTCAGTCTTTCAACAAACCC  349

seq1  AAAACATCTAAAATTAAAAGTTTATTCTTAAAAAGCACAGAGACTGGCTC  400
      ||||||||| |||||||| |||||||||| ||||||||||||||||||||
seq2  AAAACATCTCAAATTAAAGGTTTATTCTTCAAAAGCACAGAGACTGGCTC  399

seq1  ATAGAAAGAGGCATACAAATACCAGCAGGCACCAGTTATTAGAGAAATGC  450
      ||||| ||||||||||| |||||     |||||  ||||||    |||||
seq2  ATAGAGAGAGGCATACACATACCCTTCTGCACCTCTTATTATGATAATGC  449

seq1  GAACGAAAATTGCATTTACCACTCACTCTAGTTACTGGCCTGTGTCTAAG  500
      ||||||||||||||||||| ||||  |||||||||||| |||||||| ||
seq2  GAACGAAAATTGCATTTACTACTCGATCTAGTTACTGGTCTGTGTCTCAG  499

seq1  AGACAAAGGCTCCTTCAGGGACAGCGTGCTCCGGCTGTGGGTGCCTCACA  550
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  AGACAAAGGCTCCTTCGGGGACAGCGTGCTCCGGCTGTGGGTG-CTCACA  548

seq1  GTCGACCACCCTGCCCCACCCCTCAGCAAAAACCCAAAGACGACAACAAG  600
       ||||||||||||| ||| ||||| ||||||| ||  |||| ||||| ||
seq2  ATCGACCACCCTGCTCCATCCCTC-GCAAAAA-CCTCAGAC-ACAAC-AG  594

seq1  TAAATTGAAAAGAAAAAGACCAGTGGTGATGAGGATGTGGAGAG  644
      |  ||||| | | || ||| |||||||||||| |||||||||||
seq2  TTGATTGACATG-AATAGA-CAGTGGTGATGACGATGTGGAGAG  636