BAC Information

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BAC

Clone NameB6Ng01-126J11
Chromosome3 (Build37)
Map Location 118,172,391 - 118,310,714
singlet/doubletdoublet
Overlap geneDpyd
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneLOC100043275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126J11.bB6Ng01-126J11.g
ACCDH928921DH928922
length1,1751,009
definitionDH928921|Mus musculus domesticus DNA, BAC clone: B6Ng01-126J11, 5' end.DH928922|Mus musculus domesticus DNA, BAC clone: B6Ng01-126J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,172,391 - 118,173,589)(118,309,683 - 118,310,714)
sequence
gaattcaacaacaaacatgtggtttgggaaaaaagtaaaaacatagcatt
cgaaagtttaaagtatgacagattgaatcctaagttccaagaagaccaag
agcagtccagtgaggactcggaaatacagcctcagatggagttgacagaa
acggaagtcctgggagttggctccattgggaaagtacctgttaaagaagt
acgaggatagatctctagcatgcatataaaataatccgatatgtgtgttc
tctcggtacagggaaagcagagacaaatggggctctgagacattctggcc
acttagcaaaacctacacagtcacctccagggcaatgagaaactgtgcca
caaaataaggtagacaagtccagaggaaagatgctcaggtttgtcttttg
gcccccacaagcacaatcatacatgcacacatatgtacatgcatcatcat
aagcacatatatacatacatgcactcaggtaagcatgtgtgtgctagcac
catacacatacaaacacacacacacatgcacacacatctgcatgtatgtg
ctagcaccatacacacacgcacacatacatgcacacacacacagaccgac
acacacacatgaagtatcagagatagtatgcgctgtgaacaaattcggct
gggtcaatgagtttaacttgacagaaccatacagggaagaaaagcatgga
ttttttttccacttgaaaagatggatatggtccctaggacaagacccttg
ttttacacactttgtctctcttggcaatttctcactgtggcatgtatata
gcaagtactttttaaatgtttcttggttggagtcctaagaatgtcaccca
gtatagaaggtaagacatgaatggaggaagggatcctgcaacagcataaa
caaggattcttaaaggacaaaaagcaagaagagcaaaagggtggaagtca
aataagaagagtgctttcttctctttttattttttcctctcttttcatct
ttgaacttttattttcaattttatggatattatttgcatttcaatgtatc
actctttcgcttcgtctcggagacccctatccatcctcctctcctgctca
tgaggtgtcaccaaccatccaccagtccggcctccccgccctcgcaattc
cttacactgaagcatgagagcttcc
gaattctataaaactctccataatgccaagacaagtgaatagacaaattt
ttactactaagtaggtgctaacattgccctttctcttttgtactactcag
ttccttacatctatctaaagtaatcatctcctaggtggtaaatgatttgt
agaatatctattacataatgatacaaagagcttcaaatggtgtaaaatac
acacattgcctatgattaattttgtacttaataaataaggatggaatagg
aaaaagatacatttatgcagcatttgatataaagtggtaataatgtcatc
taccttaaggttttagagtttaaaacctttttgcatgcattgtataattt
aaataacaaacatctactgctacatcctcattttggatgaataaacaaat
taaagctgaataaatacaatatttacttatgtaaggaggactgagacatt
ctgatgtgattcagtcctcttgtaggattttaattcaaatttttctacat
ataaagcctttctatgtctaatgtagaaacttttaaccacatttaaaaaa
gcaaatactaaatgtcatctgaataacttattaaaggatttatattgggt
agcaactctgacaacctgaggtcaacccccaggacccagtgggtatcaga
gtaaaaaaaaaaaaaaaacaagtgtgtgctgtactctgattctttacatg
caccctggcatagtgtaaacacacacacacacacacacacacacacacac
accacacagagagagagagagagcagaaagagagagagagagagagagag
agacccaagagagatactaaatccattaaaatttatatcacttcccccaa
atttaaaataaaactcaatgtgatctcttgactatcctgaaaaggaaacc
tagagcactcaggactcatgtagactaacttcaaacagctggtgagaaca
ccttatttatcagaacttgccttaggagaagaagaagaggagaagagtta
agaggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118172391_118173589
seq2: B6Ng01-126J11.b_44_1218

seq1  GAATTCAACAACAAACATGTGGTTTGGGAAAAAAGTAAAAACATAGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAACAAACATGTGGTTTGGGAAAAAAGTAAAAACATAGCATT  50

seq1  CGAAAGTTTAAAGTATGACAGATTGAATCCTAAGTTCCAAGAAGACCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGTTTAAAGTATGACAGATTGAATCCTAAGTTCCAAGAAGACCAAG  100

seq1  AGCAGTCCAGTGAGGACTCGGAAATACAGCCTCAGATGGAGTTGACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCCAGTGAGGACTCGGAAATACAGCCTCAGATGGAGTTGACAGAA  150

seq1  ACGGAAGTCCTGGGAGTTGGCTCCATTGGGAAAGTACCTGTTAAAGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAGTCCTGGGAGTTGGCTCCATTGGGAAAGTACCTGTTAAAGAAGT  200

seq1  ACGAGGATAGATCTCTAGCATGCATATAAAATAATCCGATATGTGTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGATAGATCTCTAGCATGCATATAAAATAATCCGATATGTGTGTTC  250

seq1  TCTCGGTACAGGGAAAGCAGAGACAAATGGGGCTCTGAGACATTCTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGTACAGGGAAAGCAGAGACAAATGGGGCTCTGAGACATTCTGGCC  300

seq1  ACTTAGCAAAACCTACACAGTCACCTCCAGGGCAATGAGAAACTGTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCAAAACCTACACAGTCACCTCCAGGGCAATGAGAAACTGTGCCA  350

seq1  CAAAATAAGGTAGACAAGTCCAGAGGAAAGATGCTCAGGTTTGTCTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAGGTAGACAAGTCCAGAGGAAAGATGCTCAGGTTTGTCTTTTG  400

seq1  GCCCCCACAAGCACAATCATACATGCACACATATGTACATGCATCATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCACAAGCACAATCATACATGCACACATATGTACATGCATCATCAT  450

seq1  AAGCACATATATACATACATGCACTCAGGTAAGCATGTGTGTGCTAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATATATACATACATGCACTCAGGTAAGCATGTGTGTGCTAGCAC  500

seq1  CATACACATACAAACACACACACACATGCACACACATCTGCATGTATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATACAAACACACACACACATGCACACACATCTGCATGTATGTG  550

seq1  CTAGCACCATACACACACGCACACATACATGCACACACACACAGACCGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACCATACACACACGCACACATACATGCACACACACACAGACCGAC  600

seq1  ACACACACATGAAGTATCAGAGATAGTATGCGCTGTGAACAAATTCGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATGAAGTATCAGAGATAGTATGCGCTGTGAACAAATTCGGCT  650

seq1  GGGTCAATGAGTTTAACTTGACAGAACCATACAGGGAAGAAAAGCATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAATGAGTTTAACTTGACAGAACCATACAGGGAAGAAAAGCATGGA  700

seq1  TTTTTTTTCCACTTGAAAAGATGGATATGGTCCCTAGGACAAGACCCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCACTTGAAAAGATGGATATGGTCCCTAGGACAAGACCCTTG  750

seq1  TTTTACACACTTTGTCTCTCTTGGCAATTTCTCACTGTGGCATGTATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACACTTTGTCTCTCTTGGCAATTTCTCACTGTGGCATGTATATA  800

seq1  GCAAGTACTTTTTAAATGTTTCTTGGTTGGAGTCCTAAGAATGTCACCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTACTTTTTAAATGTTTCTTGGTTGGAGTCCTAAGAATGTCACCCA  850

seq1  GTATAGAAGGTAAGACATGAATGGAGGAAGGGATCCTGCAACAGCATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAAGGTAAGACATGAATGGAGGAAGGGATCCTGCAACAGCATAAA  900

seq1  CAAGGATTACTTAAAGGACAAAAAGCAAGAAGAGCAAAAGGGTGGAAGTC  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATT-CTTAAAGGACAAAAAGCAAGAAGAGCAAAAGGGTGGAAGTC  949

seq1  AAATAAGAAGAGTGCTTTCTTTCTTCTTTTTATTTTTTCCCTCTCTTTTC  1000
      |||||||||||||||||||||   |||||||||||||| |||||||||||
seq2  AAATAAGAAGAGTGCTTTCTT--CTCTTTTTATTTTTT-CCTCTCTTTTC  996

seq1  ATCTTTTGAACTTTTATTTTCAATTTTTTATTGGATATTTATTTGCATTT  1050
      ||| |||||||||||||||||||||||    |||||| ||||||||||||
seq2  ATC-TTTGAACTTTTATTTTCAATTTT---ATGGATA-TTATTTGCATTT  1041

seq1  CAAATGTTATCACCCTTTTCCGGCTTCGTCTCCGGAGACCCCCTATCCCA  1100
      | |||| |||||| ||||    ||||||||| |||||| ||||||| |||
seq2  C-AATG-TATCACTCTTT---CGCTTCGTCT-CGGAGA-CCCCTAT-CCA  1083

seq1  TCCCCCTCTCCCTGCTTCTATGAGGGTGTTCACCCACACATCCACCCAGT  1150
      ||| ||||| ||||||   |||| |||| ||||| || |||||| |||||
seq2  TCCTCCTCT-CCTGCT--CATGA-GGTG-TCACCAAC-CATCCA-CCAGT  1126

seq1  CCCGCCTCCCCGCCCTCGCATTCCCCTACACTGAGGCATG-GAGCCTTCC  1199
      || ||||||||||||||||| | || |||||||| ||||| ||| |||||
seq2  CCGGCCTCCCCGCCCTCGCAATTCCTTACACTGAAGCATGAGAG-CTTCC  1175

seq1: chr3_118309683_118310714
seq2: B6Ng01-126J11.g_66_1074 (reverse)

seq1  TTCTCCTCCTCCTTTACCTCTTCCTCCTCTTCTTCTTCCTCCTTAAGACA  50
      ||||||||     ||| ||||| |||||||||||||| |||| |||| ||
seq2  TTCTCCTC-----TTAACTCTT-CTCCTCTTCTTCTT-CTCC-TAAGGCA  42

seq1  AGTTCCTGATAAATTAAAGGTTGTTCTCACCAGCTGTTTGAAGTTAGTCT  100
      |||| |||||||||  |||| |||||||||||||||||||||||||||||
seq2  AGTT-CTGATAAAT--AAGG-TGTTCTCACCAGCTGTTTGAAGTTAGTCT  88

seq1  ACATGAGTCCTGAAGTGCTCTAGTGTTTACCTTTTACAGTATAGTCAAGA  150
      |||||||||||| |||||||||| |||| |||||| ||| ||||||||||
seq2  ACATGAGTCCTG-AGTGCTCTAG-GTTT-CCTTTT-CAGGATAGTCAAGA  134

seq1  GATCACATTGAGTTTTATTTTTAAATTTTGGGGGAGTTGATATTAATTTT  200
      |||||||||||||||||||||  || |||||||||  |||||| ||||||
seq2  GATCACATTGAGTTTTATTTT--AAATTTGGGGGAAGTGATATAAATTTT  182

seq1  TAATTGTATTTAGTATCTCTCTTTGTGTTCTCTCTCTCTCTCTCTCTCTC  250
        | || ||||||||||||||||   | ||||||||||||||||||||||
seq2  --AATGGATTTAGTATCTCTCTT--GGGTCTCTCTCTCTCTCTCTCTCTC  228

seq1  TCTTTCTGCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTTTCTGCTCTCTCTCTCTCTCTGTGTG-GTGTGTGTGTGTGTGTGTGT  277

seq1  GTGTGTGTGTGTGTTTACACTATGCCAGGGTGCATGTAAAGAATCAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTTTACACTATGCCAGGGTGCATGTAAAGAATCAGAGT  327

seq1  ACAGCACACACTTGTTTTTTTTTTTTTTTTACTCTGATACCCACTGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACACACTTGTTTTTTTTTTTTTTTTACTCTGATACCCACTGGGTC  377

seq1  CTGGGGGTTGACCTCAGGTTGTCAGAGTTGCTACCCAATATAAATCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGTTGACCTCAGGTTGTCAGAGTTGCTACCCAATATAAATCCTTT  427

seq1  AATAAGTTATTCAGATGACATTTAGTATTTGCTTTTTTAAATGTGGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTATTCAGATGACATTTAGTATTTGCTTTTTTAAATGTGGTTAA  477

seq1  AAGTTTCTACATTAGACATAGAAAGGCTTTATATGTAGAAAAATTTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTACATTAGACATAGAAAGGCTTTATATGTAGAAAAATTTGAAT  527

seq1  TAAAATCCTACAAGAGGACTGAATCACATCAGAATGTCTCAGTCCTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCTACAAGAGGACTGAATCACATCAGAATGTCTCAGTCCTCCTT  577

seq1  ACATAAGTAAATATTGTATTTATTCAGCTTTAATTTGTTTATTCATCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGTAAATATTGTATTTATTCAGCTTTAATTTGTTTATTCATCCAA  627

seq1  AATGAGGATGTAGCAGTAGATGTTTGTTATTTAAATTATACAATGCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGATGTAGCAGTAGATGTTTGTTATTTAAATTATACAATGCATGC  677

seq1  AAAAAGGTTTTAAACTCTAAAACCTTAAGGTAGATGACATTATTACCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTTTTAAACTCTAAAACCTTAAGGTAGATGACATTATTACCACT  727

seq1  TTATATCAAATGCTGCATAAATGTATCTTTTTCCTATTCCATCCTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCAAATGCTGCATAAATGTATCTTTTTCCTATTCCATCCTTATTT  777

seq1  ATTAAGTACAAAATTAATCATAGGCAATGTGTGTATTTTACACCATTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTACAAAATTAATCATAGGCAATGTGTGTATTTTACACCATTTGA  827

seq1  AGCTCTTTGTATCATTATGTAATAGATATTCTACAAATCATTTACCACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTGTATCATTATGTAATAGATATTCTACAAATCATTTACCACCT  877

seq1  AGGAGATGATTACTTTAGATAGATGTAAGGAACTGAGTAGTACAAAAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGATTACTTTAGATAGATGTAAGGAACTGAGTAGTACAAAAGAG  927

seq1  AAAGGGCAATGTTAGCACCTACTTAGTAGTAAAAATTTGTCTATTCACTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCAATGTTAGCACCTACTTAGTAGTAAAAATTTGTCTATTCACTT  977

seq1  GTCTTGGCATTATGGAGAGTTTTATAGAATTC  1032
      ||||||||||||||||||||||||||||||||
seq2  GTCTTGGCATTATGGAGAGTTTTATAGAATTC  1009