BAC Information

Click to search

BAC

Clone NameB6Ng01-126J23
Chromosome3 (Build37)
Map Location 117,764,241 - 117,868,677
singlet/doubletdoublet
Overlap genenone
Upstream gene1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126J23.bB6Ng01-126J23.g
ACCDH928942DH928943
length919973
definitionDH928942|Mus musculus domesticus DNA, BAC clone: B6Ng01-126J23, 5' end.DH928943|Mus musculus domesticus DNA, BAC clone: B6Ng01-126J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,764,241 - 117,765,156)(117,867,691 - 117,868,677)
sequence
gaattctctaggaactacaataaaccagtgatagtttcttatttctactg
gatttgagtcctgatggttgtagtagaggggacagttctcaggtcagaaa
aattatcaatgtttacatttgaggaattctacagtattagtaagtgagaa
aatatgaaatctaggtaatgatagacatgagttattaaaaatgaataaag
ctaattgtctttctagtttcgactcactcattgagtttattgtttgtatg
gtagataagtacgtaaaatacaattgatagtgaaactgtaaaatccaatg
tgaagttccatagcttcacaatgattatgctgtgtagacgttcatgaaaa
attcagactttgtgtctaatttaattatatactttttgtctttgattcct
tccttccttccttccttccttccttccttccttccttccttcctccctcc
ctcccttcctcccccccctctttattttttttttttttgacatggtttct
ctgtatactggctgccgtcctggaacttattctgtagatcaagctggcct
tgaccacataaatccacctgcctctgcctcccaagtgctgggattaaagg
cacgtgccaccactgcctgccttaagtcattgattcttaacagttagttt
tgaattatataaaaaagagagttacctgcttctgaaatttttttagaaat
taaattttgaatgttctacagatattcccattatccttttccatacccat
ttattctctttattttgaggaatctacggacagtcaataactcctgtctc
ttaagtttgcatatggtttgtaaggttaaacttcattatacatcacattt
atagaatttctgtcaaacacagggacctgactccacgatgcatcgaggca
taaagaaactacatcaatc
gaattcctcttctatatttgtgtttacatagggaaatgacattggagccc
agcctattgtatgtacagtcaggtcatagaaatattaagcaaaagacaag
gaaagtgggggtttcagttacacacgcacacacacacacacacacacaca
cacacacacacacacacactccagttcatgaattccagactgtggtgtga
aataagcatggttctcttttattagagtcacttgtgtgtggatatgtgaa
catggtctaactaaagcatcaatacttcagtatttgaaaacaggtaaaac
catcattagtcaaatttatcagaaaattcttctgagtctaaaaataaacc
tttctttatatttctcaattatctatcaatccatcgtgtctcatattttt
atctctgtatctttctgcagtctattatctatgtctatgtgttatttctg
tagttctgaatttctatatctatcatacattttacctttgtatctctata
tcacatatctaacatttatctacacatctatctataattctatccaatct
attaatctgtctgtctgtctgtcagtctatttatcaatcatctttatatc
tgtcatctacctcaagagtcagtcttttagcaagtatcagaaatagcttg
ttgaaacaactttaaaaatattggataaaatgaagtaaaaggaatttaac
atgtagtagtgaaaattatgttttatcatattcataagtacaaaatctct
ctatactttcccctgtgtctgccctcccatctctcctcctaaaagaccct
tcaagacatacattgtagctctactgacacactgtaaaagatacaatatt
cagtgacaagcttcactcatatgtataagaacaatgcagttcctaagttt
ttcacatatattttgcctcagtgtagcaactatgaaatgagtgggactgt
taactcatccccacttagtaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117764241_117765156
seq2: B6Ng01-126J23.b_48_966

seq1  GAATTCTCTAGGAACTACAATAAACCAGTGATAGTTTCTTATTTCTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGGAACTACAATAAACCAGTGATAGTTTCTTATTTCTACTG  50

seq1  GATTTGAGTCCTGATGGTTGTAGTAGAGGGGACAGTTCTCAGGTCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGTCCTGATGGTTGTAGTAGAGGGGACAGTTCTCAGGTCAGAAA  100

seq1  AATTATCAATGTTTACATTTGAGGAATTCTACAGTATTAGTAAGTGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCAATGTTTACATTTGAGGAATTCTACAGTATTAGTAAGTGAGAA  150

seq1  AATATGAAATCTAGGTAATGATAGACATGAGTTATTAAAAATGAATAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAATCTAGGTAATGATAGACATGAGTTATTAAAAATGAATAAAG  200

seq1  CTAATTGTCTTTCTAGTTTCGACTCACTCATTGAGTTTATTGTTTGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGTCTTTCTAGTTTCGACTCACTCATTGAGTTTATTGTTTGTATG  250

seq1  GTAGATAAGTACGTAAAATACAATTGATAGTGAAACTGTAAAATCCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAAGTACGTAAAATACAATTGATAGTGAAACTGTAAAATCCAATG  300

seq1  TGAAGTTCCATAGCTTCACAATGATTATGCTGTGTAGACGTTCATGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTCCATAGCTTCACAATGATTATGCTGTGTAGACGTTCATGAAAA  350

seq1  ATTCAGACTTTGTGTCTAATTTAATTATATACTTTTTGTCTTTGATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGACTTTGTGTCTAATTTAATTATATACTTTTTGTCTTTGATTCCT  400

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCC  450
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCC  450

seq1  CTCCCTCCCTCCCCCCCCTCTTTATTTTTTTTTTTTTTGACAGGGTTTCT  500
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCCCTTCCTCCCCCCCCTCTTTATTTTTTTTTTTTTTGACATGGTTTCT  500

seq1  CTGTATAGCCCTGGCT---GTCCTGGAACTTACTCTGTAGATCAAGCTGG  547
      |||||||   ||||||   ||||||||||||| |||||||||||||||||
seq2  CTGTATA---CTGGCTGCCGTCCTGGAACTTATTCTGTAGATCAAGCTGG  547

seq1  CCTTGACCACATAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACCACATAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  597

seq1  AGGCACATGCCACCACTGCCTGCCTTAAGTCTTTGATTCTTAACAGTTAG  647
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGCACGTGCCACCACTGCCTGCCTTAAGTCATTGATTCTTAACAGTTAG  647

seq1  TTTTTAATTATATAAAAAAGAGAGTTACCTGCTTCTAAACATTTTTTTAG  697
      |||| ||||||||||||||||||||||||||||||| || ||||||||||
seq2  TTTTGAATTATATAAAAAAGAGAGTTACCTGCTTCTGAA-ATTTTTTTAG  696

seq1  AATTTAAATTTTAAATGTTCTACAAATATTCCCATTATCCTTTTCCATAC  747
      || ||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  AAATTAAATTTTGAATGTTCTACAGATATTCCCATTATCCTTTTCCATAC  746

seq1  CCATTTATTCTC-TTATTTTTAGTAATTTAGGGCCAGTTAATAA-TCCT-  794
      |||||||||||| ||||||| || ||| || || |||| ||||| |||| 
seq2  CCATTTATTCTCTTTATTTTGAGGAATCTACGGACAGTCAATAACTCCTG  796

seq1  TCCCTTAAGTTACCATATGGTATCTAAGGTTAAACTTCTTTATACATCAC  844
      || ||||||||  |||||||| | |||||||||||||| |||||||||||
seq2  TCTCTTAAGTTTGCATATGGTTTGTAAGGTTAAACTTCATTATACATCAC  846

seq1  -TTTATTGGGTTTCTGTCAACCACAGGAACCTGAGTCCACAATGCTTCAT  893
       ||||| |  |||||||||| |||||| |||||| ||||| |||| ||  
seq2  ATTTATAGAATTTCTGTCAAACACAGGGACCTGACTCCACGATGCATCGA  896

seq1  GGATTAGAGAAACTACACCAATC  916
      ||  || |||||||||| |||||
seq2  GGCATAAAGAAACTACATCAATC  919

seq1: chr3_117867691_117868677
seq2: B6Ng01-126J23.g_66_1038 (reverse)

seq1  TGTTACTTAAAGTGGGGATGAGTTAAACAGTCCCCACTTCATTTCATTAG  50
      |||||||  ||||||||||||||| |||||| ||||| |||||||| |||
seq2  TGTTACT--AAGTGGGGATGAGTT-AACAGT-CCCAC-TCATTTCA-TAG  44

seq1  TTGCTACACTGAG--CACATATATGTGGAAAAAACTTAGGGACTTGCATT  98
      |||||||||||||   | |||||||||  ||||||||||| || |||| |
seq2  TTGCTACACTGAGGCAAAATATATGTG--AAAAACTTAGGAAC-TGCA-T  90

seq1  TGTTCCTTATACATTAATGAGTTGAAGCTTGTCACTTGAATATTGTATCT  148
      |||| |||||||||  ||||| ||||||||||||| ||||||||||||||
seq2  TGTT-CTTATACAT--ATGAG-TGAAGCTTGTCAC-TGAATATTGTATCT  135

seq1  GTTACAGTGTGTCAGTAAGAGCTACAATGTATGTCTTGAAGGGTCTTTTA  198
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTACAGTGTGTCAGT-AGAGCTACAATGTATGTCTTGAAGGGTCTTTTA  184

seq1  GGAGGAGAGATGGGAGGGCAGACACAGGGGAAAGTATAGAGAGATTTTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAGATGGGAGGGCAGACACAGGGGAAAGTATAGAGAGATTTTGT  234

seq1  ACTTATGAATATGATAAAACATAATTTTCACTACTACATGTTAAATTCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGAATATGATAAAACATAATTTTCACTACTACATGTTAAATTCCT  284

seq1  TTTACTTCATTTTATCCAATATTTTTAAAGTTGTTTCAACAAGCTATTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCATTTTATCCAATATTTTTAAAGTTGTTTCAACAAGCTATTTC  334

seq1  TGATACTTGCTAAAAGACTGACTCTTGAGGTAGATGACAGATATAAAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTTGCTAAAAGACTGACTCTTGAGGTAGATGACAGATATAAAGAT  384

seq1  GATTGATAAATAGACTGACAGACAGACAGACAGATTAATAGATTGGATAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATAAATAGACTGACAGACAGACAGACAGATTAATAGATTGGATAG  434

seq1  AATTATAGATAGATGTGTAGATAAATGTTAGATATGTGATATAGAGATAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGATAGATGTGTAGATAAATGTTAGATATGTGATATAGAGATAC  484

seq1  AAAGGTAAAATGTATGATAGATATAGAAATTCAGAACTACAGAAATAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAAATGTATGATAGATATAGAAATTCAGAACTACAGAAATAACA  534

seq1  CATAGACATAGATAATAGACTGCAGAAAGATACAGAGATAAAAATATGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACATAGATAATAGACTGCAGAAAGATACAGAGATAAAAATATGAG  584

seq1  ACACGATGGATTGATAGATAATTGAGAAATATAAAGAAAGGTTTATTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGATGGATTGATAGATAATTGAGAAATATAAAGAAAGGTTTATTTTT  634

seq1  AGACTCAGAAGAATTTTCTGATAAATTTGACTAATGATGGTTTTACCTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGAAGAATTTTCTGATAAATTTGACTAATGATGGTTTTACCTGT  684

seq1  TTTCAAATACTGAAGTATTGATGCTTTAGTTAGACCATGTTCACATATCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATACTGAAGTATTGATGCTTTAGTTAGACCATGTTCACATATCC  734

seq1  ACACACAAGTGACTCTAATAAAAGAGAACCATGCTTATTTTACACCACAG  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACACACAAGTGACTCTAATAAAAGAGAACCATGCTTATTTCACACCACAG  784

seq1  TCTGGAATTCATGAACTGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATTCATGAACTGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  834

seq1  GTGTGTGTGTGTGCGTGTGTAACTGAAACCCCCACTTTCCTTGTCTTTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGCGTGTGTAACTGAAACCCCCACTTTCCTTGTCTTTTG  884

seq1  CTTAATATTTCTATGACCTGACTGTACATACAATAGGCTGGGCTCCAATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATATTTCTATGACCTGACTGTACATACAATAGGCTGGGCTCCAATG  934

seq1  TCATTTCCCTATGTAAACACAAATATAGAAGAGGAATTC  987
      |||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCCTATGTAAACACAAATATAGAAGAGGAATTC  973