BAC Information

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BAC

Clone NameB6Ng01-126N13
Chromosome3 (Build37)
Map Location 119,916,536 - 120,022,428
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126N13.bB6Ng01-126N13.g
ACCDH929112DH929113
length1,1111,025
definitionDH929112|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N13, 5' end.DH929113|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,916,536 - 119,917,673)(120,021,373 - 120,022,428)
sequence
gaattctataatttagtgttctgcttataataatccaaccttcccccagt
gaaccctatctccagagacaagacctctattctggagcctttctatatta
gataagaggaggtttcaacctctcctaagcatccagcactccatgctttc
agaattttgtcccagcataaaatgatggttgatattcacaggcaacagaa
atgcaactccccattcatcgctatcacgactgctatttctcgtgccccaa
aagcactttgcggactataaaatcttaaacaaatgtgcatacacattatc
actatctcaaattatctggggccaagagacaccgatgctgggtaatcaaa
tttcattgaagtggatgtaaaatgtgagtcgagtaaaagaatgtgttagt
gtgttcagggacacttaggaatttgggtgatatgtcataaaatttcaagt
tctaacttgggagttgaaatgggcctagaataaaataagaggagggaagg
tgaaggagaaaaggatagtttacattttgattattgcatgactaagaatt
cagttgggataaacgagagtaaaattgtaaactgtagacagactaatgaa
gaaaaaaaaaaggacgtatggattcatgtattttgcccttggcagaaaga
tctttcttcaaaagaaaaaaataacaaggcagagcaagaactctagaaga
aaggtgggctggaatcatagatgcctccctgatataaaaggggtgcagtg
atttcctgtatcttgtggaaatagtagctatggagctgttgtggccagcc
cctgacctccgggcatgtcaacgatgtaagaatgaagggctctagatgaa
cttccttccgtttctccctcaaaggggctggtgttaacagtgcagttcag
atgacctttcccatctgagagtggagaaagtcaagggcttatggagtaaa
cgtactgatgcattctgcgtgtgtgtatatgatctcccttagagaagatt
tgaagaagatgcagagcagtatataatctgaaatgtgcacatagaaatga
tcacaaatgcagaaagaatctgccgatgagacgctgatctatttccttgg
acgtagtctga
gaattcacaatagaggagtctagaatggcccaaaagcacttgaagaaatg
ttgaaagtccttagtgatcagggaaatgtaaatcaaaaggaccccgagat
tccactttacaccaaccagaaaggccaggattaaaaactcaggtgacagc
agatgttggcaagaatgttgagaaagaagaacactcctccattgatggtg
ggattgcaaactggtacaagtactctggaaatcaagctggaggttcctca
gaaaattggaagtagatctacctgaagtcccagctacattatgtgggtta
actttcttctaggaatacagaatttctagctttattcttggtaggaaaga
atatgaatctttatagttattacttctgttttttttttttggctcatttt
attgtcatagacaaaatggagaaaaaaatgaacatttaatagttcaacta
ttaaatttttaaacactgtcgcttaaaaaagacagatcaaagaaacaaac
aaataaacaagtaaacttgcatacttgtaacagtgataatgagagcagtt
ttgttaaggtttgtggttaaacttttcccagagcattataaacatcatca
tttacacatggaatttttaatattagttttattcttggtaggaatggatt
tgagctttatgctttttattatgagggaacaaaaccattaattattttga
gcttctttctttttcttcttcttcttctcctcctcctcctcctcctcacc
ctcttattattactattattggcttttaagttagatttttctcctaaatg
ttcagtcaattgcattacctaccttttaaatatttatttcattaaataac
tatttgatctgagcactaactagtctatttgtccacaagtttgtggttaa
atgctttcactatgtatacaaatttatttattacagtgactctcatactt
tgtcggtagatgtttcttgacagccacaccatgcctgggttaccctctac
ttctgatcctccttcccagcactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119916536_119917673
seq2: B6Ng01-126N13.b_48_1158

seq1  GAATTCTATAATTTAGTGTTCTGCTTATAATAATCCAACCTTCCCCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAATTTAGTGTTCTGCTTATAATAATCCAACCTTCCCCCAGT  50

seq1  GAACCCTATCTCCAGAGACAAGACCTCTATTCTGGAGCCTTTCTATATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTATCTCCAGAGACAAGACCTCTATTCTGGAGCCTTTCTATATTA  100

seq1  GATAAGAGGAGGTTTCAACCTCTCCTAAGCATCCAGCACTCCATGCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAGGAGGTTTCAACCTCTCCTAAGCATCCAGCACTCCATGCTTTC  150

seq1  AGAATTTTGTCCCAGCATAAAATGATGGTTGATATTCACAGGCAACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTGTCCCAGCATAAAATGATGGTTGATATTCACAGGCAACAGAA  200

seq1  ATGCAACTCCCCATTCATCGCTATCACGACTGCTATTTCTCGTGCCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACTCCCCATTCATCGCTATCACGACTGCTATTTCTCGTGCCCCAA  250

seq1  AAGCACTTTGCGGACTATAAAATCTTAAACAAATGTGCATACACATTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTTGCGGACTATAAAATCTTAAACAAATGTGCATACACATTATC  300

seq1  ACTATCTCAAATTATCTGGGGCCAAGAGACACCGATGCTGGGTAATCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTCAAATTATCTGGGGCCAAGAGACACCGATGCTGGGTAATCAAA  350

seq1  TTTCATTGAAGTGGATGTAAAATGTGAGTCGAGTAAAAGAATGTGTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGAAGTGGATGTAAAATGTGAGTCGAGTAAAAGAATGTGTTAGT  400

seq1  GTGTTCAGGGACACTTAGGAATTTGGGTGATATGTCATAAAATTTCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGGGACACTTAGGAATTTGGGTGATATGTCATAAAATTTCAAGT  450

seq1  TCTAACTTGGGAGTTGAAATGGGCCTAGAATAAAATAAGAGGAGGGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTGGGAGTTGAAATGGGCCTAGAATAAAATAAGAGGAGGGAAGG  500

seq1  TGAAGGAGAAAAGGATAGTTTACATTTTGATTATTGCATGACTAAGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGAAAAGGATAGTTTACATTTTGATTATTGCATGACTAAGAATT  550

seq1  CAGTTGGGATAAACGAGAGTAAAATTGTAAACTGTAGACAGACTAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGGATAAACGAGAGTAAAATTGTAAACTGTAGACAGACTAATGAA  600

seq1  GAAAAAAAAAAGGACGTATGGATTCATGTATTTTGCCCTTGGCAGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAGGACGTATGGATTCATGTATTTTGCCCTTGGCAGAAAGA  650

seq1  TCTTTCTTCAAAAGAAAAAAATAACAAGGCAGAGCAAGAACTCTAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCAAAAGAAAAAAATAACAAGGCAGAGCAAGAACTCTAGAAGA  700

seq1  AAGGTGGGCTGGAATCATAGATGCCTCCCTGATATAAAAGGGGTGCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGCTGGAATCATAGATGCCTCCCTGATATAAAAGGGGTGCAGTG  750

seq1  ATTTCCTGTATCTTGTGGAAATAGTAGCTATGGAGCTGTTGTGGCCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGTATCTTGTGGAAATAGTAGCTATGGAGCTGTTGTGGCCAGCC  800

seq1  CCTGACCTCCGGGCATGTCAACGATGTAAGAATGAAGGGCTCTAGATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCTCCGGGCATGTCAACGATGTAAGAATGAAGGGCTCTAGATGAA  850

seq1  CTTCCTTCCGTTTCTCCCTCAAAGGGGCTGGTGTTAACAGTGCAGTTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCGTTTCTCCCTCAAAGGGGCTGGTGTTAACAGTGCAGTTCAG  900

seq1  ATGACCTTTCCCATCTGAGAGTGGAGAAAGTCAAGGGCTTAGGGAGTAAA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGACCTTTCCCATCTGAGAGTGGAGAAAGTCAAGGGCTTATGGAGTAAA  950

seq1  CGTACTGAATGCATTCTTGCGTGTGTGTATATGAATTCTCCCTTCAGAGG  1000
      ||||||| |||||||| |||||||||||||||||  |||||||| |||| 
seq2  CGTACTG-ATGCATTC-TGCGTGTGTGTATATGA--TCTCCCTT-AGAG-  994

seq1  AAAGATTTGAAAGAAAGATGCAGAGCAGTATATAAATCTGAAAATGTGCA  1050
       ||||||||||   ||||||||||||||||||| |||||| |||||||||
seq2  -AAGATTTGAA--GAAGATGCAGAGCAGTATAT-AATCTG-AAATGTGCA  1039

seq1  CCATAAGAAAATGAATCACCAAAATGGCAAGAAAAGACATCTGCAGATGA  1100
       ||||   ||||| |||||  |||| |||   ||||| |||||| |||||
seq2  -CATA--GAAATG-ATCAC--AAAT-GCA--GAAAGA-ATCTGCCGATGA  1079

seq1  GACGCTGGAATCTATTTTTCCTCTGGACAGTAGTCTGA  1138
      |||||||  |||||  |||||| ||||| |||||||||
seq2  GACGCTG--ATCTA--TTTCCT-TGGAC-GTAGTCTGA  1111

seq1: chr3_120021373_120022428
seq2: B6Ng01-126N13.g_68_1092 (reverse)

seq1  AGAGTGCTGAGAAAAGAGAAGGAATCAGAAGTAAAGAGGGTATACCCCAG  50
      ||||||||| ||    || ||| |||||||||  |||||||| ||||   
seq2  AGAGTGCTGGGA----AGGAGG-ATCAGAAGT--AGAGGGTA-ACCC--A  40

seq1  GGCATGGGTGTGGGCTTGTCAAAGAAACATCTTACCGACAAAGGTTATGA  100
      ||||| |||||||   |||| |||||||||| |||||||||||  |||||
seq2  GGCAT-GGTGTGG--CTGTC-AAGAAACATC-TACCGACAAAG--TATGA  83

seq1  GAGTCACTGGTTAATACATTACATTTTGTAATACAATAGTGAAAAGCATT  150
      |||||||||  ||||| ||   | ||||| |||| |||||| ||||||||
seq2  GAGTCACTG--TAATAAAT--AAATTTGT-ATAC-ATAGTG-AAAGCATT  126

seq1  TAAACACAAACTTGT-GACAAATATGACTAGTTTAGTGCTTCAGATACAA  199
      ||| ||||||||||| |||||||| |||||| ||||||| |||||| |||
seq2  TAACCACAAACTTGTGGACAAATA-GACTAG-TTAGTGC-TCAGAT-CAA  172

seq1  ATAGTTATTTAATGAAATTAAAATAATTTAAAAGGTAGGTAATGCAATTG  249
      ||||||||||||||||||  |||| |||||||||||||||||||||||||
seq2  ATAGTTATTTAATGAAAT--AAAT-ATTTAAAAGGTAGGTAATGCAATTG  219

seq1  ACTGAACATTTAGGAGAAAAATCTAACTTAAAAGCCAATAATAGTAATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACATTTAGGAGAAAAATCTAACTTAAAAGCCAATAATAGTAATAA  269

seq1  TAAGAGGGTGAAGGAGGAGGAGGAGGAGGAGAAGAAGAAGAAGAAAAAGA  349
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGGTG-AGGAGGAGGAGGAGGAGGAGAAGAAGAAGAAGAAAAAGA  318

seq1  AAGAAGCTCAAAATAATTAATGGTTTTGTTCCCTCATAATAAAAAGCATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTCAAAATAATTAATGGTTTTGTTCCCTCATAATAAAAAGCATA  368

seq1  AAGCTCAAATCCATTCCTACCAAGAATAAAACTAATATTAAAAATTCCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAAATCCATTCCTACCAAGAATAAAACTAATATTAAAAATTCCAT  418

seq1  GTGTAAATGATGATGTTTATAATGCTCTGGGAAAAGTTTAACCACAAACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAATGATGATGTTTATAATGCTCTGGGAAAAGTTTAACCACAAACC  468

seq1  TTAACAAAACTGCTCTCATTATCACTGTTACAAGTATGCAAGTTTACTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAACTGCTCTCATTATCACTGTTACAAGTATGCAAGTTTACTTG  518

seq1  TTTATTTGTTTGTTTCTTTGATCTGTCTTTTTTAAGCGACAGTGTTTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTTTGTTTCTTTGATCTGTCTTTTTTAAGCGACAGTGTTTAAA  568

seq1  AATTTAATAGTTGAACTATTAAATGTTCATTTTTTTCTCCATTTTGTCTA  649
      ||||||||||||||||||||||||||||                 |||||
seq2  AATTTAATAGTTGAACTATTAAATGTTCNNNNNNNNNNNNNNNNNGTCTA  618

seq1  TGACAATAAAATGAGCCAAAAAAAAAAAACAGAAGTAATAACTATAAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATAAAATGAGCCAAAAAAAAAAAACAGAAGTAATAACTATAAAGA  668

seq1  TTCATATTCTTTCCTACCAAGAATAAAGCTAGAAATTCTGTATTCCTAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTCTTTCCTACCAAGAATAAAGCTAGAAATTCTGTATTCCTAGA  718

seq1  AGAAAGTTAACCCACATAATGTAGCTGGGACTTCAGGTAGATCTACTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTAACCCACATAATGTAGCTGGGACTTCAGGTAGATCTACTTCC  768

seq1  AATTTTCTGAGGAACCTCCAGCTTGATTTCCAGAGTACTTGTACCAGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTGAGGAACCTCCAGCTTGATTTCCAGAGTACTTGTACCAGTTT  818

seq1  GCAATCCCACCATCAATGGAGGAGTGTTCTTCTTTCTCAACATTCTTGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCCACCATCAATGGAGGAGTGTTCTTCTTTCTCAACATTCTTGCC  868

seq1  AACATCTGCTGTCACCTGAGTTTTTAATCCTGGCCTTTCTGGTTGGTGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGCTGTCACCTGAGTTTTTAATCCTGGCCTTTCTGGTTGGTGTA  918

seq1  AAGTGGAATCTCGGGGTCCTTTTGATTTACATTTCCCTGATCACTAAGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAATCTCGGGGTCCTTTTGATTTACATTTCCCTGATCACTAAGGA  968

seq1  CTTTCAACATTTCTTCAAGTGCTTTTGGGCCATTCTAGACTCCTCTATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAACATTTCTTCAAGTGCTTTTGGGCCATTCTAGACTCCTCTATTG  1018

seq1  TGAATTC  1056
      |||||||
seq2  TGAATTC  1025