BAC Information

Click to search

BAC

Clone NameB6Ng01-127B15
Chromosome3 (Build37)2 (Build37)
Map Location 41,059,224 - 41,059,7377,628,858 - 7,629,952
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127B15.bB6Ng01-127B15.g
ACCDH929307DH929308
length1,0021,053
definitionDH929307|Mus musculus domesticus DNA, BAC clone: B6Ng01-127B15, 5' end.DH929308|Mus musculus domesticus DNA, BAC clone: B6Ng01-127B15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(7,628,858 - 7,629,952)
sequence
gaattctttgcttagctctgagccccatattttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtcac
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgccttacagaagctttgcaatttta
tgaggtcccatttgtctattctagatcttacagcacaagccattgctgtt
ctattcaggaaattttctcctgtgcccgtatcttcgaggcttttccccac
tttctcctctataagtttcagtgtctctgtttttatgtggagttccttga
tccacttagatttgaccttagtaaagggaggtaggaatggattaattcgc
attattctacaggataaccaccagttgtgccagcaccatttgttgaaaat
gctattttttccactggatggttttagctcccttgtcaacgatcaagtgt
acataggtgtgtgggttcatttctgggtcttcaattctattcctttggtc
tacttgtctgtcgttataacagtaccatgcagtttttatcacaattgcta
tgtagtacagctttaggtcaggcatggtgattccaacagaggttctttca
tcattgagaagggtttttgcaatcctaggttttttgttattccagatgaa
tttgaagattgttctttctaattccttgaagaattgagttggaattttga
tggggattgcattgaatctgtagattgcttttggcaagatagccgttttt
actatattgattctgccaatccatgagcatgtgagatctatccatcttct
gagatcttcttcaatttctttctttagagacttgaagttcttctcataca
gatctttcacatccgtagttagcgtcatgccaagtatttatattatttgt
gactattgtgaaggtgtggtttcccaaatttctttcttagcctgtttatt
tt
gaattcatttcaagatggaggtcaagtatgggagtgccagaagattctcg
ggaaattgacatcatagactgaattagaaataggaactatccagagaata
tccatgagcagaacaaagggaagcagctatgttataaaagtcatggattt
gctattgtgcaaacccagtgttagcctaacaagaaatatagcactaaaaa
aaaaaaaaaaaaaaaaatgggatttttttaaaaagctgaatttatattcc
tttccaccatagaaactcctcaagtcctttagggaatgcttacatcaaat
gctgtgccatttttaagatttttatgtgactgaaatagagactgggagta
tagctcatttgctagagtgtgagaacccatgcttactccttagtaccaca
tacactgagaactgggcttctcagtgtcacagagaacctacagtttcagc
accagggaggtgaagtcaggaggatcaggagtttaagattatcacctgct
atatagtgagtttaaggctatcctgggcaacatgagactctatgtcaaaa
aatattttagcaattttattctcacagacctaactttgttttagctagaa
cctagaaatcccctgtatttatgattgtggaaaaacactttaattttttt
aaaaaacaacttctagtggcaaaatataactactgacttggaggatagtg
agatatggtttagtgagctagactgggtagcagcaaacatagaacttatc
tagagaggccttcaataaacttatacattatggttctttttttaaagctt
tcaaatcatgctttgtaagagaatttgataaatatttttaatctgtaatt
cattaaatatgctgcatttgatgattttctcctgccttcatgagatcagc
tcaggtcaagattaggctcataaatgtacaggctcgtacttccatctatt
ctttcatgcattatattgtctaaccccactaaatccccctccacaccatt
tcagtatttatcaggacaagagaacgttatattaaggtcatcgatggagt
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-127B15.b_47_559 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||  ||||||||| | |||||||||||||||||||||||
seq2  CCACACACCTATGTACACTTGATCGTTGACAAGGGAGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      |||||||||  | |||||||||||||||||||||||||||||||||| ||
seq2  GTGGAAAAA--ATAGCATTTTCAACAAATGGTGCTGGCACAACTGGTGGT  98

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      |||| ||||||| |||||||||| ||||| ||||| |||| | |||||||
seq2  TATCCTGTAGAATAATGCGAATTAATCCATTCCTACCTCCCTTTACTAAG  148

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  GTCAAATCTAAGTGGATCAAGGAACTCCACATAAAAACAGAGACACTGAA  198

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      |||||||||||||||||||||||||||||| ||||||| || |||||| |
seq2  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATACGGGCACAGGAG  248

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
      |||| |||||| ||||||||||||||||||||||||||||||  ||||||
seq2  AAAATTTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCTAGAATA  298

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
      ||||||||||||||||| ||| ||||||||||||| ||||||||||||||
seq2  GACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACAC  348

seq1  CGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCT  399
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCT  398

seq1  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAG  449
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  ATCCTAAATCAGATAGGTGACTAATATCCAATATATATAAAGAACTCAAG  448

seq1  AAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  499
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  AAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAATATGGGGCTCAGA  498

seq1  GCTAAACAAAGAATT  514
      ||||| |||||||||
seq2  GCTAAGCAAAGAATT  513

seq1: chr2_7628858_7629952
seq2: B6Ng01-127B15.g_68_1120 (reverse)

seq1  TTTACTCCATCTGGATGACCTTTAATAATAACGTCTCTCTTGGTCCTTGA  50
      |||||||||||  ||||||| ||||| ||||||| |||||| |||| |||
seq2  TTTACTCCATC--GATGACC-TTAAT-ATAACGT-TCTCTT-GTCC-TGA  43

seq1  TTAAATACTGGAAATGGTGGTGGGAGGGGGGAATTTTAAGTGGGGGTTAG  100
       |||||||| |||||||||   ||||||||  ||||  ||| ||||||||
seq2  -TAAATACT-GAAATGGTG--TGGAGGGGG--ATTT--AGT-GGGGTTAG  84

seq1  AACATAATAATTTGCATGGAATAGAATAGATTTGTAAAGTAACGAGGCCT  150
       |||  ||||  ||||||  | |||||||||     |||| |||| ||||
seq2  -ACAATATAA--TGCATG--AAAGAATAGAT---GGAAGT-ACGA-GCCT  124

seq1  GTTACATTTTTATGAGGCCTAATCTTTGACCTTGAGCTGATCTCATGAAG  200
      | ||||  ||||||| |||||||| |||||| ||||||||||||||||||
seq2  G-TACA--TTTATGA-GCCTAATC-TTGACC-TGAGCTGATCTCATGAAG  168

seq1  GCAGGAAGAAAATCAATCAAATGCAAGCATATTTAATGAATTAACAGATT  250
      ||||| |||||||| ||||||||| ||||||||||||||||| |||||||
seq2  GCAGG-AGAAAATC-ATCAAATGC-AGCATATTTAATGAATT-ACAGATT  214

seq1  AAAAATATTTAATCAAAATTCTCTTTACAAAGCATGATTTGAAAGCTTTA  300
      |||||||||| ||| |||||||| ||||||||||||||||||||||||| 
seq2  AAAAATATTT-ATC-AAATTCTC-TTACAAAGCATGATTTGAAAGCTTT-  260

seq1  AAAAAAAGAACCATAATGTATAAGTTTATTGAAGGCCTCTTCTAGATAAG  350
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAAAAAGAACCATAATGTATAAGTTTATTGAAGGCCTC-TCTAGATAAG  309

seq1  TTCTATGTTTGCTGCTACCCAGTCTAGCTCACTAAACCATTATCTCACTA  400
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCTATGTTTGCTGCTACCCAGTCTAGCTCACTAAACCA-TATCTCACTA  358

seq1  TCCTCCAAGTCAGTAGTTATATTTTGCCACTAGAAGTTGTTTTTTAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAGTCAGTAGTTATATTTTGCCACTAGAAGTTGTTTTTTAAAAA  408

seq1  AATTAAAGTGTTTTTCCACAATCATAAATACAGGGGATTTCTAGGTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGTGTTTTTCCACAATCATAAATACAGGGGATTTCTAGGTTCTA  458

seq1  GCTAAAACAAAGTTAGGTCTGTGAGAATAAAATTGCTAAAATATTTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAACAAAGTTAGGTCTGTGAGAATAAAATTGCTAAAATATTTTTTG  508

seq1  ACATAGAGTCTCATGTTGCCCAGGATAGCCTTAAACTCACTATATAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGTCTCATGTTGCCCAGGATAGCCTTAAACTCACTATATAGCAG  558

seq1  GTGATAATCTTAAACTCCTGATCCTCCTGACTTCACCTCCCTGGTGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAATCTTAAACTCCTGATCCTCCTGACTTCACCTCCCTGGTGCTGA  608

seq1  AACTGTAGGTTCTCTGTGACACTGAGAAGCCCAGTTCTCAGTGTATGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAGGTTCTCTGTGACACTGAGAAGCCCAGTTCTCAGTGTATGTGG  658

seq1  TACTAAGGAGTAAGCATGGGTTCTCACACTCTAGCAAATGAGCTATACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGGAGTAAGCATGGGTTCTCACACTCTAGCAAATGAGCTATACTC  708

seq1  CCAGTCTCTATTTCAGTCACATAAAAATCTTAAAAATGGCACAGCATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCTATTTCAGTCACATAAAAATCTTAAAAATGGCACAGCATTTG  758

seq1  ATGTAAGCATTCCCTAAAGGACTTGAGGAGTTTCTATGGTGGAAAGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGCATTCCCTAAAGGACTTGAGGAGTTTCTATGGTGGAAAGGAAT  808

seq1  ATAAATTCAGCTTTTTAAAAAAATCCCATTTTTTTTTTTTTTTTTTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCAGCTTTTTAAAAAAATCCCATTTTTTTTTTTTTTTTTTTTTT  858

seq1  AGTGCTATATTTCTTGTTAGGCTAACACTGGGTTTGCACAATAGCAAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTATATTTCTTGTTAGGCTAACACTGGGTTTGCACAATAGCAAATC  908

seq1  CATGACTTTTATAACATAGCTGCTTCCCTTTGTTCTGCTCATGGATATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTTTATAACATAGCTGCTTCCCTTTGTTCTGCTCATGGATATTC  958

seq1  TCTGGATAGTTCCTATTTCTAATTCAGTCTATGATGTCAATTTCCCGAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATAGTTCCTATTTCTAATTCAGTCTATGATGTCAATTTCCCGAGA  1008

seq1  ATCTTCTGGCACTCCCATACTTGACCTCCATCTTGAAATGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGGCACTCCCATACTTGACCTCCATCTTGAAATGAATTC  1053