BAC Information

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BAC

Clone NameB6Ng01-127G23
Chromosome3 (Build37)
Map Location 134,584,974 - 134,704,489
singlet/doubletdoublet
Overlap geneTacr3, LOC229837
Upstream geneLOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234
Downstream geneLOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127G23.bB6Ng01-127G23.g
ACCDH929553DH929554
length1,168929
definitionDH929553|Mus musculus domesticus DNA, BAC clone: B6Ng01-127G23, 5' end.DH929554|Mus musculus domesticus DNA, BAC clone: B6Ng01-127G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,584,974 - 134,586,150)(134,703,534 - 134,704,489)
sequence
gaattctatcatggaaaccacatggtggaaagagaaaactaaatcccata
aattatcctctgacctctacatgcagacacacacacacacacacacacac
acacacacacacacacacaagagaaagagacagagagagagaaagatgta
ttcactttataaataaatatatgctaaaaggatacacatatgaacctaga
gtcttcagagttcagcagcttcaaagtttcatatgctgagaactaggtaa
ctgtattttatacaaataaataaggtaaaatacaaaaattatttcacttt
aggacaatctgttatggtctttttgggttttcctaagatccatttcttat
acacttcaaatacacttctagatcctttgcaaagaggcctgagggactat
gtgtagattttagtatcagctcctccccttatactatgcctgtgaactgg
aaattatttcaagcccctcttccatctccacacacatttcagttgtaccc
atctttttcaagtcctttcccctgcaatggcaggaatccacttacagata
cactgatagccttaatgaatcttcactcagttttactgcagaactacttt
attctctggtgacttgttccctataaaggactccagtaagctccacattc
cagtctcaagggtggttttctgactcttgtttgtttgtttgctcacaatg
aaatatattgcttcatccaaagagtataattttaaattgattgtatattc
atttttttctctctatttacctaagtttatttcccataaagaagaaataa
caataaataaacttgttatatgttgttatgtcaattcaaaacttaatgac
taagtgacacagaccacattactgagtataaccttgggcaccatttaccc
acaagtgtgccctttaatatcttcccagttacattcactttcattctctt
atttttaaagttttaagaactcattatgtttaatgccatctattgtgtct
agaatactcagtaaaggagtaaaaatataaagagcaaaaataacaataga
ttaaatgggcacatacaagtggttctagttggcttgaaagacagcaggtc
tcattacttaatagagccctgaaagatggcacgctgtttgtgaggcttca
ggaaagcggagagcattc
gaattcttctctagtatctgttacagcagtaaagagtgtagatgctcgat
cactttggtcttcacaattaaagtctcagattcaccctgcctatttgtcg
tgaacggaagagtccttactactttctggcaagttaattgtgctgatttg
aggtatggattttaaaaaaataagcatgcattattcagcttcgcaaactc
atttgaatgaaacagggttataataacatgccaagtgtgctagtcctttt
ccccaagtgttctagtctccacctcacagtccctgcctttactacatatg
atgcaccctgcagatagcatgggtgacacaggcagatccatgcaggaaag
aaagaatggtgttaaagttcagcgataggggatgagctagagacaccaaa
ggcacgttattcatgctgcaaaaattgttttggtcgagaagttcccacta
gcagtttgaaagataaaactgtagcaaatgacatgacactgaaattagag
actatgacacctgtaagaggtcatgacaggcaggactatgtggggtgaag
gggcattggatgagctgatataattaggaaggcgtgtttgtttaaagaaa
ataaagaggactgcttagttttataggtcaacaaatcacgttgacagtgt
acttgctcgggtatatatcactggagtccctagtgtcaatcagcacctcc
tatttagtcacactaacctcatgtcgaataatactccatccatctgcacc
acatgaaatcacatctacatctttcttttcatgatagtatctctaatcaa
atatagtcactactatatgcacagcaatcatgtacagaaataaaagggca
agatgacaaataaagaaatccaaagtaaatgttgtgatctacatctgatt
ttttgagtaaagatgagaagaccccattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_134584974_134586150
seq2: B6Ng01-127G23.b_50_1217

seq1  GAATTCTATCATGGAAACCACATGGTGGAAAGAGAAAACTAAATCCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCATGGAAACCACATGGTGGAAAGAGAAAACTAAATCCCATA  50

seq1  AATTATCCTCTGACCTCTACATGCAGACACACACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCCTCTGACCTCTACATGCAGACACACACACACACACACACACAC  100

seq1  ACACACACACACACACACAAGAGAAAGAGACAGAGAGAGAGAAAGATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACAAGAGAAAGAGACAGAGAGAGAGAAAGATGTA  150

seq1  TTCACTTTATAAATAAATATATGCTAAAAGGATACACATATGAACCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTATAAATAAATATATGCTAAAAGGATACACATATGAACCTAGA  200

seq1  GTCTTCAGAGTTCAGCAGCTTCAAAGTTTCATATGCTGAGAACTAGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGAGTTCAGCAGCTTCAAAGTTTCATATGCTGAGAACTAGGTAA  250

seq1  CTGTATTTTATACAAATAAATAAGGTAAAATACAAAAATTATTTCACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTTATACAAATAAATAAGGTAAAATACAAAAATTATTTCACTTT  300

seq1  AGGACAATCTGTTATGGTCTTTTTGGGTTTTCCTAAGATCCATTTCTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAATCTGTTATGGTCTTTTTGGGTTTTCCTAAGATCCATTTCTTAT  350

seq1  ACACTTCAAATACACTTCTAGATCCTTTGCAAAGAGGCCTGAGGGACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCAAATACACTTCTAGATCCTTTGCAAAGAGGCCTGAGGGACTAT  400

seq1  GTGTAGATTTTAGTATCAGCTCCTCCCCTTATACTATGCCTGTGAACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGATTTTAGTATCAGCTCCTCCCCTTATACTATGCCTGTGAACTGG  450

seq1  AAATTATTTCAAGCCCCTCTTCCATCTCCACACACATTTCAGTTGTACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTCAAGCCCCTCTTCCATCTCCACACACATTTCAGTTGTACCC  500

seq1  ATCTTTTTCAAGTCCTTTCCCCTGCAATGGCAGGAATCCACTTACAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTCAAGTCCTTTCCCCTGCAATGGCAGGAATCCACTTACAGATA  550

seq1  CACTGATAGCCTTAATGAATCTTCACTCAGTTTTACTGCAGAACTACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATAGCCTTAATGAATCTTCACTCAGTTTTACTGCAGAACTACTTT  600

seq1  ATTCTCTGGTGACTTGTTCCCTATAAAGGACTCCAGTAAGCTCCACATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGGTGACTTGTTCCCTATAAAGGACTCCAGTAAGCTCCACATTC  650

seq1  CAGTCTCAAGGGTGGTTTTCTGACTCTTGTTTGTTTGTTTGCTCACAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCAAGGGTGGTTTTCTGACTCTTGTTTGTTTGTTTGCTCACAATG  700

seq1  AAATATATTGCTTCATCCAAAGAGTATAATTTTAAATTGATTGTATATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTGCTTCATCCAAAGAGTATAATTTTAAATTGATTGTATATTC  750

seq1  ATTTTTTTCTCTCTATTTACCTAAGTTTATTTCCCATAAAGAAGAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCTCTCTATTTACCTAAGTTTATTTCCCATAAAGAAGAAATAA  800

seq1  CAATAAAT-AACTTGTTATATGTTGTTATGTCAATTCAAAACTTAATGAC  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATAAACTTGTTATATGTTGTTATGTCAATTCAAAACTTAATGAC  850

seq1  TAAGTGACACAGACCACATTACTGAGTATAACCTTGGGCACCATTTACCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGACACAGACCACATTACTGAGTATAACCTTGGGCACCATTTACCC  900

seq1  ACAAGTGTGCCCTTTAATATCTTCCCAGTTACATTCACTTTCATTCTCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTGCCCTTTAATATCTTCCCAGTTACATTCACTTTCATTCTCTT  950

seq1  ATTTTTAAAGTTTTAAGAACTCATTATGTTTAATTGCCATCTA-TGTGTC  998
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  ATTTTTAAAGTTTTAAGAACTCATTATGTTTAA-TGCCATCTATTGTGTC  999

seq1  TAGAATACATCAGTAAAGGAGTAAAAATATAAAGAGCAAAACATAACAAA  1048
      |||||||| |||||||||||||||||||||||||||||||| ||||||| 
seq2  TAGAATAC-TCAGTAAAGGAGTAAAAATATAAAGAGCAAAA-ATAACAA-  1046

seq1  TAAGATTTAAAATTGGGCACATACAAAGTGGTTCTAGTTGGGCTAGAAAG  1098
        |||||   || ||||||||||| |||||||||||||| |||| |||||
seq2  -TAGATT---AAATGGGCACATAC-AAGTGGTTCTAGTT-GGCTTGAAAG  1090

seq1  ACAGCAGGTCACATTACTAAATAAGAGTCTTGAAAAAGATTGACAGCTGT  1148
      |||||||||| ||||||| ||| |||| | ||  |||||| |   |||||
seq2  ACAGCAGGTCTCATTACTTAAT-AGAGCCCTG--AAAGATGGCACGCTGT  1137

seq1  GTG-AAGGCTTCAGG-AAGCCGAGAGCATTC  1177
       ||  |||||||||| |||| ||||||||||
seq2  TTGTGAGGCTTCAGGAAAGCGGAGAGCATTC  1168

seq1: chr3_134703534_134704489
seq2: B6Ng01-127G23.g_66_994 (reverse)

seq1  GAATGTGGTCTTCTTCAATCTTTTACTTCAAAAAAATCAGATTTGTAGAT  50
      ||||| ||||||||   ||| ||||||   |||||||||||  |||||||
seq2  GAATGGGGTCTTCT--CATC-TTTACT--CAAAAAATCAGA--TGTAGAT  43

seq1  ACACAACATTTTACTTTTGATTTCTTTATTTGGTTCATCTTGGCCCTTTT  100
       ||||||| |||||||| ||||||||||||||  ||||||||  || |||
seq2  -CACAACA-TTTACTTTGGATTTCTTTATTTG--TCATCTTG--CCCTTT  87

seq1  TATTTCTTGTACATGATTTGCTGTGCA-ATATTAGTAAGTTGAACTATTA  149
      |||||| ||||||||| |||||||||| ||| ||||       |||||  
seq2  TATTTC-TGTACATGA-TTGCTGTGCATATAGTAGT------GACTAT--  127

seq1  ATTTGATTAGAAGATACTAATCATGAAAAGAAAGAATGTAGATGTGATTT  199
      |||||||||| ||||||| ||||||||||||||| |||||||||||| ||
seq2  ATTTGATTAG-AGATACT-ATCATGAAAAGAAAG-ATGTAGATGTGA-TT  173

seq1  TCATGTGGTGCAGATGGATGGAGTATTATTCGACATGAGGTTAGTGTGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGTGCAGATGGATGGAGTATTATTCGACATGAGGTTAGTGTGAC  223

seq1  TAAAATAGGAGGTGCTGATTGACACTAGGGACTCCAGTGATATATACCCG  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAATAGGAGGTGCTGATTGACACTAGGGACTCCAGTGATATATACCCG  272

seq1  AGCAAGTACACTGTCAACGTGATTTGTTGACCTATAAAACTAAGCAGTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTACACTGTCAACGTGATTTGTTGACCTATAAAACTAAGCAGTCC  322

seq1  TCTTTATTTTCTTTAAACAAACACGCCTTCCTAATTATATCAGCTCATCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTTCTTTAAACAAACACGCCTTCCTAATTATATCAGCTCATCC  372

seq1  AATGCCCCTTCACCCCACATAGTCCTGCCTGTCATGACCTCTTACAGGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCCTTCACCCCACATAGTCCTGCCTGTCATGACCTCTTACAGGTG  422

seq1  TCATAGTCTCTAATTTCAGTGTCATGTCATTTGCTACAGTTTTATCTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTCTCTAATTTCAGTGTCATGTCATTTGCTACAGTTTTATCTTTC  472

seq1  AAACTGCTAGTGGGAACTTCTCGACCAAAACAATTTTTGCAGCATGAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTAGTGGGAACTTCTCGACCAAAACAATTTTTGCAGCATGAATA  522

seq1  ACGTGCCTTTGGTGTCTCTAGCTCATCCCCTATCGCTGAACTTTAACACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCCTTTGGTGTCTCTAGCTCATCCCCTATCGCTGAACTTTAACACC  572

seq1  ATTCTTTCTTTCCTGCATGGATCTGCCTGTGTCACCCATGCTATCTGCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCTTTCCTGCATGGATCTGCCTGTGTCACCCATGCTATCTGCAG  622

seq1  GGTGCATCATATGTAGTAAAGGCAGGGACTGTGAGGTGGAGACTAGAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATCATATGTAGTAAAGGCAGGGACTGTGAGGTGGAGACTAGAACA  672

seq1  CTTGGGGAAAAGGACTAGCACACTTGGCATGTTATTATAACCCTGTTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGAAAAGGACTAGCACACTTGGCATGTTATTATAACCCTGTTTCA  722

seq1  TTCAAATGAGTTTGCGAAGCTGAATAATGCATGCTTATTTTTTTAAAATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGAGTTTGCGAAGCTGAATAATGCATGCTTATTTTTTTAAAATC  772

seq1  CATACCTCAAATCAGCACAATTAACTTGCCAGAAAGTAGTAAGGACTCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTCAAATCAGCACAATTAACTTGCCAGAAAGTAGTAAGGACTCTT  822

seq1  CCGTTCACGACAAATAGGCAGGGTGAATCTGAGACTTTAATTGTGAAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCACGACAAATAGGCAGGGTGAATCTGAGACTTTAATTGTGAAGAC  872

seq1  CAAAGTGATCGAGCATCTACACTCTTTACTGCTGTAACAGATACTAGAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGATCGAGCATCTACACTCTTTACTGCTGTAACAGATACTAGAGA  922

seq1  AGAATTC  956
      |||||||
seq2  AGAATTC  929