BAC Information

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BAC

Clone NameB6Ng01-127L17
Chromosome3 (Build37)
Map Location 113,060,989 - 113,293,864
singlet/doubletdoublet
Overlap geneAmy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1
Upstream geneEG229746, LOC668717, Utp14B-ps, EG433643, OTTMUSG00000022462, LOC668723
Downstream geneRnpc3, Col11a1, LOC100043220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127L17.bB6Ng01-127L17.g
ACCDH929770DH929771
length1,136782
definitionDH929770|Mus musculus domesticus DNA, BAC clone: B6Ng01-127L17, 5' end.DH929771|Mus musculus domesticus DNA, BAC clone: B6Ng01-127L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,060,989 - 113,062,131)(113,293,348 - 113,293,864)
sequence
gaattcatcttcatttccagaccttgtgcagattttatagctgattggtt
ggtatctttcccaccaaggtcttgatgggttatgaactacaacgttttca
ttgggtggagagacctacaagtaaaacagttataattagtaccagatgat
ggcttatgttacatacctaaatcttatagaaagctatcaataatctggca
ttacttcttaacctataaacattcacttctgttgtgtatcataatatcac
cagatattatggaaggacattgcagaggtcctcttgatattctacaataa
gtacaaaggtgccacaactaccaatcctttttctttctcagcaaagtcat
gtgtgaaatgaagttgtgctctaaagtcactagtcttgattagaatatga
tgtgagcacagtaagctctgcatttatttgtgaagttatcttacctgcac
ccctccaaatcccttaggagctaagtatcgctcacattccttggcaatat
caacccagcgccactcgaacaggtggacaatagcagtcctcccatctgaa
gtatgtgggtcatattgagcccagcagaacccaatgagggaaagcagcag
aacgaacttcattttgctttgaagttgtcagtgttctttctctctagcgc
ctatttatatttctacaaaaagtacattttccaaagtaaatgctcatgag
taaatatttaaggtacagtctatcattcgaaagagattagtagcaatgat
gtgcacagctgaaggttcttcagaaactcccatggagaataaacttaatt
cttttaaatatcaattactaattgactgatactatatcttactttttgtg
acctccaccaacccgtacaaggagaattacaactgaaatcaaatatatct
gggacgtttcatctctaaatctttgtattgcaccattccaaatagaaatg
ggagtatcaattcacttctttttgtttcgctacttaagattttttttcat
tattcagtattttcatttaattttagatgctgcattgtgccatgcaccta
ctactgtagtaaagtgaagaatgaaaaaagttagatttgttgcagtgcca
tttatggaaagtactcttaattcatagaattatata
gaattcaaactgaggcagggtttcctctttgttatagctaatttttaaga
acagctaatcttgctcctgcagctgtggtcatcatgatttctagtcagtc
ctctcagatggggaagggccaccatgtggtattgaactattgaacttgtt
taaattggcagggaaagggaaaattcctcaagcagcaggtgggaggggga
gagaaaagcttctgcaaacagctttgttgcccattagccaagctaaaagc
tgtattcagagcagtcactatgaaaagcagtaaggagaattatcaaagag
cccaaaactaatgtagtatatgacctagctatactactacttgggttttt
gggtacatgcccaaaacatgacatcatattccataatgctcaactactca
tggtcattgctgctgtatccaaaatagctaaatttctttcaataaggaat
ggataatgaaaatgtaattcatatacactatgcaacactattaagttata
agaaaaatgaaataatgtattttgcaggtaaatgtatgaaatcagaaaag
atcacattgtgtgagataatccagactcagaaagacgtgtcacatgttct
gtctctttggagtcaaccctctccaaatcgttacaagtaaatacatatac
tgggggcaactgcagaaccagaaagtgagactagtgccagggtaggtagt
tgtgggttcaatagagagaggaaacacaggatgtaaatgctgattggata
agtggctctaaattagggagggggaagggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113060989_113062131
seq2: B6Ng01-127L17.b_52_1187

seq1  GAATTCATCTTCATTTCCAGACCTTGTGCAGATTTTATAGCTGATTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCATTTCCAGACCTTGTGCAGATTTTATAGCTGATTGGTT  50

seq1  GGTATCTTTCCCACCAAGGTCTTGATGGGTTATGAACTACAACGTTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTTTCCCACCAAGGTCTTGATGGGTTATGAACTACAACGTTTTCA  100

seq1  TTGGGTGGAGAGACCTACAAGTAAAACAGTTATAATTAGTACCAGATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGAGAGACCTACAAGTAAAACAGTTATAATTAGTACCAGATGAT  150

seq1  GGCTTATGTTACATACCTAAATCTTATAGAAAGCTATCAATAATCTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATGTTACATACCTAAATCTTATAGAAAGCTATCAATAATCTGGCA  200

seq1  TTACTTCTTAACCTATAAACATTCACTTCTGTTGTGTATCATAATATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTTAACCTATAAACATTCACTTCTGTTGTGTATCATAATATCAC  250

seq1  CAGATATTATGGAAGGACATTGCAGAGGTCCTCTTGATATTCTACAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTATGGAAGGACATTGCAGAGGTCCTCTTGATATTCTACAATAA  300

seq1  GTACAAAGGTGCCACAACTACCAATCCTTTTTCTTTCTCAGCAAAGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAGGTGCCACAACTACCAATCCTTTTTCTTTCTCAGCAAAGTCAT  350

seq1  GTGTGAAATGAAGTTGTGCTCTAAAGTCACTAGTCTTGATTAGAATATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAATGAAGTTGTGCTCTAAAGTCACTAGTCTTGATTAGAATATGA  400

seq1  TGTGAGCACAGTAAGCTCTGCATTTATTTGTGAAGTTATCTTACCTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCACAGTAAGCTCTGCATTTATTTGTGAAGTTATCTTACCTGCAC  450

seq1  CCCTCCAAATCCCTTAGGAGCTAAGTATCGCTCACATTCCTTGGCAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAATCCCTTAGGAGCTAAGTATCGCTCACATTCCTTGGCAATAT  500

seq1  CAACCCAGCGCCACTCGAACAGGTGGACAATAGCAGTCCTCCCATCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAGCGCCACTCGAACAGGTGGACAATAGCAGTCCTCCCATCTGAA  550

seq1  GTATGTGGGTCATATTGAGCCCAGCAGAACCCAATGAGGGAAAGCAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGGGTCATATTGAGCCCAGCAGAACCCAATGAGGGAAAGCAGCAG  600

seq1  AACGAACTTCATTTTGCTTTGAAGTTGTCAGTGTTCTTTCTCTCTAGCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAACTTCATTTTGCTTTGAAGTTGTCAGTGTTCTTTCTCTCTAGCGC  650

seq1  CTATTTATATTTCTACAAAAAGTACATTTTCCAAAGTAAATGCTCATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATATTTCTACAAAAAGTACATTTTCCAAAGTAAATGCTCATGAG  700

seq1  TAAATATTTAAGGTACAGTCTATCATTCGAAAGAGATTAGTAGCAATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTAAGGTACAGTCTATCATTCGAAAGAGATTAGTAGCAATGAT  750

seq1  GTGCACAGCTGAAGGTTCTTCAGAAACTCCCATGGAGAATAAACTTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGCTGAAGGTTCTTCAGAAACTCCCATGGAGAATAAACTTAATT  800

seq1  CTTTTAAATATCAATTACTAATTGACTGATACTATATCTTACTTTTTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAATATCAATTACTAATTGACTGATACTATATCTTACTTTTTGTG  850

seq1  ACCTCCACCAACCCGTACAAGGAGAATTACAACTGAAATCAAATATATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACCAACCCGTACAAGGAGAATTACAACTGAAATCAAATATATCT  900

seq1  GGGACGTTTCATCTCTAAATCTTTGTATTGCACCATTCCAAATAGAAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGTTTCATCTCTAAATCTTTGTATTGCACCATTCCAAATAGAAATG  950

seq1  GGAGTATCAATTCACTTCTTTTTGTTTCGCCTACTTAAGATTTTTTTTCA  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAGTATCAATTCACTTCTTTTTGTTTCG-CTACTTAAGATTTTTTTTCA  999

seq1  TTATTTCAGTATTTTCATTTAATTTTAAGATGCTGCATTGTGCCATGCAC  1050
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTA-TTCAGTATTTTCATTTAATTTT-AGATGCTGCATTGTGCCATGCAC  1047

seq1  CTACTACTGTAGTAAAAGTG-AGAATGAAAAAAGTTAAGATTTTGTGCAA  1099
      ||||||||||||| |||||| ||||||||||||||| ||||||  |||| 
seq2  CTACTACTGTAGT-AAAGTGAAGAATGAAAAAAGTT-AGATTTGTTGCA-  1094

seq1  GTTGCCAATTTATAGAAAGTACTCTAAATCAATAGAATTATATA  1143
        |||| |||||| ||||||||||| |||  |||||||||||||
seq2  -GTGCC-ATTTATGGAAAGTACTCTTAATTCATAGAATTATATA  1136

seq1: chr3_113293348_113293864
seq2: B6Ng01-127L17.g_332_850 (reverse)

seq1  TCTCCCTTCCCCCTCCCTAA-TTAGAGCCACTTATCCAATCAGCATTTAC  49
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTCCCTTCCCCCTCCCTAATTTAGAGCCACTTATCCAATCAGCATTTAC  50

seq1  ATCCTGTGTTTCCTCTCTCTATTGAACCCACAACTACCTACCCTGGCACT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGTTTCCTCTCTCTATTGAACCCACAACTACCTACCCTGGCACT  100

seq1  AGTCTCACTTTCTGGTTCTGCAGTTG-CCCCAGTATATGTATTTACTTGT  148
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTCTCACTTTCTGGTTCTGCAGTTGCCCCCAGTATATGTATTTACTTGT  150

seq1  AACGATTTGGAGAGGGTTGACTCCAAAGAGACAGAACATGTGACACGTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATTTGGAGAGGGTTGACTCCAAAGAGACAGAACATGTGACACGTCT  200

seq1  TTCTGAGTCTGGATTATCTCACACAATGTGATCTTTTCTGATTTCATACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTCTGGATTATCTCACACAATGTGATCTTTTCTGATTTCATACA  250

seq1  TTTACCTGCAAAATACATTATTTCATTTTTCTTATAACTTAATAGTGTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGCAAAATACATTATTTCATTTTTCTTATAACTTAATAGTGTTG  300

seq1  CATAGTGTATATGAATTACATTTTCATTATCCATTCCTTATTGAAAGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGTATATGAATTACATTTTCATTATCCATTCCTTATTGAAAGAAA  350

seq1  TTTAGCTATTTTGGATACAGCAGCAATGACCATGAGTAGTTGAGCATTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTATTTTGGATACAGCAGCAATGACCATGAGTAGTTGAGCATTAT  400

seq1  GGAATATGATGTCATGTTTTGGGCATGTACCCAAAAACCCAAGTAGTAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATGATGTCATGTTTTGGGCATGTACCCAAAAACCCAAGTAGTAGT  450

seq1  ATAGCTAGGTCATATACTACATTAGTTTTGGGCTCTTTGATAATTCTCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAGGTCATATACTACATTAGTTTTGGGCTCTTTGATAATTCTCCT  500

seq1  TACTGCTTTTCATAGTGAC  517
      |||||||||||||||||||
seq2  TACTGCTTTTCATAGTGAC  519