BAC Information

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BAC

Clone NameB6Ng01-127N03
Chromosome3 (Build37)
Map Location 18,368,787 - 18,369,831
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
Downstream geneLOC622921, LOC100040153, Armc1, Mtfr1, Pde7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127N03.bB6Ng01-127N03.g
ACCDH929836DH929837
length1,2501,026
definitionDH929836|Mus musculus domesticus DNA, BAC clone: B6Ng01-127N03, 5' end.DH929837|Mus musculus domesticus DNA, BAC clone: B6Ng01-127N03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttccttattattatttttttgatgaattttggttgaaagtctat
tttattagatattggaatgtcgatcccagcttgtttcttgtgacaatttg
atttaagaattgttttctagcattttattctgaggtagtatctgtcattg
tcactatggtgtgtgtcctgtaagcagcaaaatgctgggtcctgtttatg
tatccagtctgttagtgtatttctttttgttgcaaaattgagtccactga
ttttaagagatattaaggaacagtgattgttgcttcctgttattttcttg
ttagagttagaattaggtttttgttgctaatttcctttgggtttgttgaa
agaagattactttcttgatttttcaatagtgtagtttcccttcttgtata
ggagttttccacctattatcctttgtagggctgaatttgtggaaagaaat
tgtttaaatttggttttgtcattgaatatcttggtttctccacccatggt
aagtaagagttttcctggttatagtaggctgggttgacatttgtatttat
ttattagatattttcttcatttacatttcaaatgctatccccattcctag
tttcctctgtgaaattcccttatactctcccctcccccactccccacttc
cggctccccaactcacccactcctacttcctaagcctggctttaccctgt
actggggcatataatcttctcaagatcaagggcgtctcctcccattgatg
gccatctagaccatcctctgatacatatggaactaggaacataagctctg
ggaagtactggttggttcatattgttgtccctccctatagggatgtagac
cctttagctccttgggtacttttgctagctcctttcattgggggacctgt
gttgcttccaaaagatgactgtgagcatccacttctgtatttgccaggca
ctggcatggcctaacaagagatagctatatcagatccttgctgacatatg
aaatagtgtctgcatttggtggctgatatgggatggatccccaggtgggg
cagtctctggatgttcttcctccatttcagctcctgactaagactcgaat
tctaaggacgtggattcactggcttcctcctctgagtccagggttggcat
gggaactggaattcagttccgggctatatccgttacgaccgattaggacc
cttgaacggtatcctaccagagagtatccccgagtgcatgcaattgccac

gaattcttaattcagtgttatcatgttctctggaccaaatataaagaact
atgaacagtcaagcacaagaagtcacatgttctgggctgtgcatttccaa
aagcaaccatgccacacacagtctgggatttttacttttttacttttttg
gttcctgatttatctcttttcaagtctgtaagctgaaacaaaaggtttca
atgaaatgttagaacccaccagtcaatgacttccttcatagaataaatgc
caatgcttctctgctagcctagacttagagatttagcacaagtcaataaa
taaacaatgtatgggggagctaagcaaaggaggatccttttagagagact
ggcttatagtgcctgagggccttgcattgcttcttggagcaggaggtgac
attctcatttcgtcatttgtgtgtttcctgtatcacctcctatgcccatc
aaataatggtgcaagggagtaatactggtgacctcccttatgtagtctca
gtactgcagggcacaaagatgagaactgctacttctccttcagtttccac
aaaacctgtctgttcttgaaaccctcctggttttctttccatgccttctc
cctatagttcaaatgcccatagggaatccgttactagtaaaattaataaa
actatagtcctactccccaactttcttctttctattgtgatcccatcagt
tctttggaaggaagtcaattaaataataatgtatgccccattgggtagta
acctagccttggaaagtagaggtcactcaaaggcaaatgcattagtaact
gagtcacctgtatgcagccttgatctacatttcctctagggacttttgct
tagtaagagacatgattcttgtcagagaaaactcacataaacttgccatc
attcagagccctttgagtcccccagcatgcagtggtcctagcacccgcca
gctttgtgttagttttcaaggcagcaaagtagatcatattactaaggctt
cgatgccacgcccctcttgctagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18368787_18369831
seq2: B6Ng01-127N03.g_69_1094 (reverse)

seq1  TTTCTATGGCAAGAGGAGC-TGGCATCAGAGCCTTAGTAAATAATTGATA  49
      ||||||  |||||||| || |||||||  ||||||||| ||||  |||| 
seq2  TTTCTA--GCAAGAGGGGCGTGGCATCGAAGCCTTAGT-AATA--TGAT-  44

seq1  CTACTTTGCCTGCCTTGAAAACT-ACACAAAGCTGGC-GGTGCCTTAGGG  97
      |||||||| |||||||||||||| ||||||||||||| |||||  || ||
seq2  CTACTTTG-CTGCCTTGAAAACTAACACAAAGCTGGCGGGTGC--TA-GG  90

seq1  ACCACTGCATGCTGTGGGGACTTCAAGGGGCTCTGAATGATTGCCAAGTT  147
      |||||||||||||| |||||| |||| ||||||||||||| || ||||||
seq2  ACCACTGCATGCTG-GGGGAC-TCAAAGGGCTCTGAATGA-TGGCAAGTT  137

seq1  CTATGTGAGTTTTCTCTGACCAAGAATCATGTTCCTCTTACTTAGCAAAA  197
       |||||||||||||||||| ||||||||||||  |||||||| |||||||
seq2  -TATGTGAGTTTTCTCTGA-CAAGAATCATGT--CTCTTACTAAGCAAAA  183

seq1  GTCCCTTAGAGGAAATGTAGATCAAAGGCTGCATACAGGTGACTCAGTTA  247
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTCCC-TAGAGGAAATGTAGATC-AAGGCTGCATACAGGTGACTCAGTTA  231

seq1  CTAATGCATTTGCCTTTTGAGTGACCTCTACTTTCCAAGGCTAGGTTTAC  297
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  CTAATGCATTTGCC-TTTGAGTGACCTCTACTTTCCAAGGCTAGG-TTAC  279

seq1  TACCCAATGGGGCATACATTATTAATTTAATTGACTTCCTTCCAAAGAAC  347
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TACCCAATGGGGCATACATTATT-ATTTAATTGACTTCCTTCCAAAGAAC  328

seq1  TGATGGGATCACAATAGAAAGAAGAAAGTTGGGGAGTAGGACTATAGTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGATCACAATAGAAAGAAGAAAGTTGGGGAGTAGGACTATAGTTT  378

seq1  TATTAATTTTACTAGTAACGGATTCCCTATGGGCATTTGAACTATAGGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTTACTAGTAACGGATTCCCTATGGGCATTTGAACTATAGGGA  428

seq1  GAAGGCATGGAAAGAAAACCAGGAGGGTTTCAAGAACAGACAGGTTTTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCATGGAAAGAAAACCAGGAGGGTTTCAAGAACAGACAGGTTTTGT  478

seq1  GGAAACTGAAGGAGAAGTAGCAGTTCTCATCTTTGTGCCCTGCAGTACTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGAAGGAGAAGTAGCAGTTCTCATCTTTGTGCCCTGCAGTACTG  528

seq1  AGACTACATAAGGGAGGTCACCAGTATTACTCCCTTGCACCATTATTTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACATAAGGGAGGTCACCAGTATTACTCCCTTGCACCATTATTTGA  578

seq1  TGGGCATAGGAGGTGATACAGGAAACACACAAATGACGAAATGAGAATGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATAGGAGGTGATACAGGAAACACACAAATGACGAAATGAGAATGT  628

seq1  CACCTCCTGCTCCAAGAAGCAATGCAAGGCCCTCAGGCACTATAAGCCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTGCTCCAAGAAGCAATGCAAGGCCCTCAGGCACTATAAGCCAG  678

seq1  TCTCTCTAAAAGGATCCTCCTTTGCTTAGCTCCCCCATACATTGTTTATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAAAAGGATCCTCCTTTGCTTAGCTCCCCCATACATTGTTTATT  728

seq1  TATTGACTTGTGCTAAATCTCTAAGTCTAGGCTAGCAGAGAAGCATTGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACTTGTGCTAAATCTCTAAGTCTAGGCTAGCAGAGAAGCATTGGC  778

seq1  ATTTATTCTATGAAGGAAGTCATTGACTGGTGGGTTCTAACATTTCATTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCTATGAAGGAAGTCATTGACTGGTGGGTTCTAACATTTCATTG  828

seq1  AAACCTTTTGTTTCAGCTTACAGACTTGAAAAGAGATAAATCAGGAACCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTTGTTTCAGCTTACAGACTTGAAAAGAGATAAATCAGGAACCA  878

seq1  AAAAAGTAAAAAAGTAAAAATCCCAGACTGTGTGTGGCATGGTTGCTTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAAAAAAGTAAAAATCCCAGACTGTGTGTGGCATGGTTGCTTTT  928

seq1  GGAAATGCACAGCCCAGAACATGTGACTTCTTGTGCTTGACTGTTCATAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCACAGCCCAGAACATGTGACTTCTTGTGCTTGACTGTTCATAG  978

seq1  TTCTTTATATTTGGTCCAGAGAACATGATAACACTGAATTAAGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATATTTGGTCCAGAGAACATGATAACACTGAATTAAGAATTC  1026