BAC Information

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BAC

Clone NameB6Ng01-127O08
Chromosome3 (Build37)
Map Location 48,884,351 - 49,025,633
singlet/doubletdoublet
Overlap geneEG666230
Upstream geneLOC666208, 1700018B24Rik, LOC100039404
Downstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127O08.bB6Ng01-127O08.g
ACCDH929890DH929891
length1,062735
definitionDH929890|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O08, 5' end.DH929891|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,884,351 - 48,885,227)(49,024,900 - 49,025,633)
sequence
gaattcagagagctgcctcccctgttaagtacagatgataaggtatttgg
gtggaccctgccctgaaattaccatttctacgccacctgggcctaacctt
accaagtgcttggctgaccttggactcagtaatctgccctgcctgccttt
gtatttttctgacatgttgcctcatgaatgcaactgccttctttccttta
gattcgtgaatgccctagtaattcctattaaatctttatattttgcatag
ttgaaaaattatatattttgaacccacgtatatagagtgctttcccatag
cctttaagggtcccaacatttaccattttgctgagacattagtcacatat
ttgcctcctgtacctgtgctgtctgattatcatgaagtcattaatgttaa
ctcacaggagattccttggaggaatgtgaaaatgtttacattattagaca
aacgggccttacgcctacggcatctatctaaatttgtggaggttcacata
gggaccccatcccagaggcaagaaccatgtcactgtcaccaccatggtta
caccaggcttggcatctcctgagggctcacaccagggccttgtcccaggg
actggaaccatgtctctatctcactctttcctcactaggcccaggccagg
cttagcacaagttggatatgtgacaaagacacagaatcagaaactgacgc
acacacacagagaatactaggacccagaatgatcagaatgaacaaaagtt
attttagctttaacaacgaagactctaaacaagtaagacattgtgttatt
gaatacagtcatatgccatatagaatgactgtggtcagtgatgcactgtg
tagagaacggggcttatacatcatgatctcgaggaacttccgcatgcaca
gagataatacttgtctatgtaaagaacatggtcgtacagatggtgtgctg
tgtggacatatgctgtgttctaaagctgactgtgtctacttaggatagtc
cttctaacaaataaataccctgaacaagtggcagaatcccccaatggtgt
gctaccacttct
gaattctttttggaattatttaatacctatgtccatttttatttgaattt
tgttttgttcaattaattataatagttccagttttatccatgataaggtt
aacctttattattattattattattaatattagtattaggattattatta
ttattattattattgagacagggttactctgtatacccctggctgtcctg
gaactcactctataaaccaggctgggctctaacgcaaaaattctcctgcc
tctgtctcccaagtgttgggattaaaggcgtgcaccactactgtccagct
tttttaacctttaaattttctggagtaaaaaattacacaccttatttata
atgtttcttcttgactttacaaataactaattttaaaatggacattctat
atagataaatattttcctgctttgttcggttgatgatagcccatccatac
ccttatttattctgatgctcctattgaatacaatttatatcttttgtact
ttcttctcagataaactagtctatgaagattattctctttcacgtggcct
atggagaaaattctattttaaggtggcattttttctctctcatatagtaa
actacccaatccaaagaatccttgcgaattctagcagggaaaaagcttat
acaatttgaactattgcttcaataacatcattgattttggttctcagtaa
ttactaattctttggagaaagaacatttcttatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48884351_48885227
seq2: B6Ng01-127O08.b_244_1107

seq1  TAGATTCATGAATGCCCTAGTAATTCCTATTAAATCTTTATATTTTGCAT  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCGTGAATGCCCTAGTAATTCCTATTAAATCTTTATATTTTGCAT  50

seq1  AGTTGAGAAATTATATATTTTGAACCCACGTATATAGAGTGCTTTCCCAT  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAAAATTATATATTTTGAACCCACGTATATAGAGTGCTTTCCCAT  100

seq1  AGCCTTTAAGGGTCCCAACATTTACCATTTTGCTGAGACATTAGTCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTAAGGGTCCCAACATTTACCATTTTGCTGAGACATTAGTCACAT  150

seq1  ATTTGCCTCCTGTACCTGTGCTGTCTGATTATCATGAAGTCATTAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCTCCTGTACCTGTGCTGTCTGATTATCATGAAGTCATTAATGTT  200

seq1  AACAGAGAGGATATTCCTTGGAGGAATGTGAAAATATTTACATTATTAGA  250
      |||  | |||| ||||||||||||||||||||||| ||||||||||||||
seq2  AACTCACAGGAGATTCCTTGGAGGAATGTGAAAATGTTTACATTATTAGA  250

seq1  CAAACAGGCCTTACACCTACAGCAGCTATCTAACTTTGTGGAGGTTCACA  300
      ||||| |||||||| ||||| ||| |||||||| ||||||||||||||||
seq2  CAAACGGGCCTTACGCCTACGGCATCTATCTAAATTTGTGGAGGTTCACA  300

seq1  TAGGGACCCCATCCCAGAGGCAAGAACCATGTCACTGTCACCACCATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACCCCATCCCAGAGGCAAGAACCATGTCACTGTCACCACCATGGT  350

seq1  TACACCAGGCTTGGCATCTCCTGAGGGCTCACACCAGGGCCTTGTCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAGGCTTGGCATCTCCTGAGGGCTCACACCAGGGCCTTGTCCCAG  400

seq1  GGACTGGAACCATGTCTCTATCTCACTCTTTCCTCACTAGGCCCAGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGAACCATGTCTCTATCTCACTCTTTCCTCACTAGGCCCAGGCCA  450

seq1  GGCTAAGCAGAAGTTGGAGATGTGAGAAAGAGAGAGAATCAGAGACAGAG  500
      |||| |||| |||||||| |||||| ||||| | ||||||||| || || 
seq2  GGCTTAGCACAAGTTGGATATGTGACAAAGACACAGAATCAGAAACTGAC  500

seq1  GCACACACACAGAGAATACAAGGACCCAGAATGATCAGAATGAACAAAAG  550
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCACACACACAGAGAATACTAGGACCCAGAATGATCAGAATGAACAAAAG  550

seq1  TTATTTTAGCTTTAACAACGAAGACTCTAACAGAAGTAAGACATTGTGTT  600
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  TTATTTTAGCTTTAACAACGAAGACTCTAA-ACAAGTAAGACATTGTGTT  599

seq1  ATTGAATACAGTCATATGCCATATAGAATTACTGTGGTCAGTGATGCACT  650
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTGAATACAGTCATATGCCATATAGAATGACTGTGGTCAGTGATGCACT  649

seq1  GTGTAGAGAACGGGGCTTTATAACATCATGATTCTCGAGGAACTTCAGGC  700
      |||||||||||||||| |||| ||||||||| ||||||||||||||  ||
seq2  GTGTAGAGAACGGGGC-TTAT-ACATCATGA-TCTCGAGGAACTTC-CGC  695

seq1  ATGCACAGAGATAATACTTGTCTATGTAAAGAACAGTGGTGGTACAGATT  750
      ||||||||||||||||||||||||||||||||||| |||| ||||||| |
seq2  ATGCACAGAGATAATACTTGTCTATGTAAAGAACA-TGGTCGTACAGA-T  743

seq1  CATGTGCTGTGCTGTACATATGCTGTGTTTTAAAGCTGACTCTGTCTACA  800
        ||||||||| || |||||||||||||| ||||||||||| ||||||| 
seq2  GGTGTGCTGTG-TGGACATATGCTGTGTTCTAAAGCTGACTGTGTCTACT  792

seq1  TAGGATAAGTAGTTCTTAGTAAAATATATACCATGATCAAGTGGCAGTAT  850
      |||||| |||  |||| |   ||||| ||||| ||| |||||||||| ||
seq2  TAGGAT-AGTCCTTCTAA--CAAATAAATACCCTGAACAAGTGGCAGAAT  839

seq1  CTCACATATGCTGTGCTTACCACTTCT  877
      | | || ||| ||||| ||||||||||
seq2  CCCCCA-ATGGTGTGC-TACCACTTCT  864

seq1: chr3_49024900_49025633
seq2: B6Ng01-127O08.g_68_802 (reverse)

seq1  CTATAAGAAATGTTCTTTCTCTTAAAGATTTGTAATTAATGATAACCAAA  50
      |||||||||||||||||||||  ||  ||| ||||||| ||| |||||||
seq2  CTATAAGAAATGTTCTTTCTCCAAAGAATTAGTAATTACTGAGAACCAAA  50

seq1  ATCAATGATTTTATTGAAGCAAAAGTCCAAATTGTAAATATTATTTTCCT  100
      ||||||||| |||||||||||| ||| ||||||||| |   | ||| |||
seq2  ATCAATGATGTTATTGAAGCAATAGTTCAAATTGTATAAGCTTTTTCCCT  100

seq1  ACTAGAATTAGGAAGGATTCTTT-GAATAGGTAGTTTACTCTATGAGAGA  149
       |||||||| | ||||||||||| || | ||||||||||| |||||||||
seq2  GCTAGAATTCGCAAGGATTCTTTGGATTGGGTAGTTTACTATATGAGAGA  150

seq1  GAAAAAATGCCACATTAAAATAGACTTTTCTCCATTGGCCACATGAAAGT  199
      ||||||||||||| |||||||||| |||||||||| |||||| |||||| 
seq2  GAAAAAATGCCACCTTAAAATAGAATTTTCTCCATAGGCCACGTGAAAGA  200

seq1  GAATAATTTTCATAGAATAATTTATCTGAGAAGAAAGTACAAAAGATATA  249
      ||||||| |||||||| || ||||||||||||||||||||||||||||||
seq2  GAATAATCTTCATAGACTAGTTTATCTGAGAAGAAAGTACAAAAGATATA  250

seq1  AATTGTTTTTAATAAGAGCATCAAAATAAATAATGGTATTGATGGACTAT  299
      |||||| || |||| |||||||| ||||||||| ||||| ||||| ||||
seq2  AATTGTATTCAATAGGAGCATCAGAATAAATAAGGGTATGGATGGGCTAT  300

seq1  CATCAACCGAACAAAGCAGGAAAATATTAATCTATATAGAATGTCCATTT  349
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATCAACCGAACAAAGCAGGAAAATATTTATCTATATAGAATGTCCATTT  350

seq1  TAAAATTAGTTATTTGTAAAGTCAAGAAGAAACATTATAAATAAGGTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAGTTATTTGTAAAGTCAAGAAGAAACATTATAAATAAGGTGTG  400

seq1  TAATTTTTTACTACATAAAATTTAAAGGTTAAAAAAGCTGGACAGTAGTG  449
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTACTCCAGAAAATTTAAAGGTTAAAAAAGCTGGACAGTAGTG  450

seq1  GTGCACGCCTTTAATCCCAACACTTGGGAGACAGAGGCAGGAGAATTTCT  499
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGCACGCCTTTAATCCCAACACTTGGGAGACAGAGGCAGGAGAATTTTT  500

seq1  GAGTTCGAGGCCAGCCTGGTCTATAGAGTGAGTTCCAGGACAGCCAGGGC  549
      | ||| ||| |||||||||| |||||||||||||||||||||||||||| 
seq2  GCGTTAGAGCCCAGCCTGGTTTATAGAGTGAGTTCCAGGACAGCCAGGGG  550

seq1  TATACAGAGAAACCCTGTCTCAATAATAATAATAATAATAATAATAATAA  599
      ||||||||| |||||||||||||||||||||||||||||||||||  |||
seq2  TATACAGAGTAACCCTGTCTCAATAATAATAATAATAATAATAATCCTAA  600

seq1  TAATAATAATAATAATAATAATAATAATAAAGGTTAACCTTATGATGGAT  649
      || ||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  TACTAATATTAATAATAATAATAATAATAAAGGTTAACCTTATCATGGAT  650

seq1  AAAACTGGAACTATTATAATTAATTGAACAAAACAAAATTCAAATAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGAACTATTATAATTAATTGAACAAAACAAAATTCAAATAAAAA  700

seq1  TGGATATAGGTATTAAATAATTCTTAAAAGAATTC  734
      |||| ||||||||||||||||||  ||||||||||
seq2  TGGACATAGGTATTAAATAATTCCAAAAAGAATTC  735