BAC Information

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BAC

Clone NameB6Ng01-127P11
Chromosome3 (Build37)
Map Location 81,768,489 - 81,769,646
singlet/doubletsinglet
Overlap geneTdo2
Upstream geneEG626841, Pdgfc, LOC229443, LOC100041901, Ctso
Downstream geneAccn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127P11.bB6Ng01-127P11.g
ACCDH929942DH929943
length1,157448
definitionDH929942|Mus musculus domesticus DNA, BAC clone: B6Ng01-127P11, 5' end.DH929943|Mus musculus domesticus DNA, BAC clone: B6Ng01-127P11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctaactcttctctccccagctctttactgctttcttcaccttc
tgctttgactctaggtattcaccagtgattctcaaacatttatacccagc
ttggatgtccccttagatttcagatcatgtatttttacattctacttgta
tcttctcctgattctcttaaaataagaaaagaaaattgagtagaagaatt
ccctcccatgagtcctcaccttgacccagtcttgtcagagttaagtatgt
tttcctcccaagagccttcaactgtcaaataagtcacctaggaatggtcc
ttgttcctattccttttcaacaatgatttttttaaaagatttatttactt
taattttatacctatgagtattttgtctgcatatacgtgtgtgccccaga
tggtgcccacaaaggtcaaatgagagtgatggatctctgggccttaagtt
acagagagctgtgagtgaacatgtgggtgttaagaactgaatcatgagta
gcaacaagtattcctaaccactgagcaatctctcacctctccagtccctc
aacaatatttctgagagatggctgtatcagctttgtatcttacaatagtt
ctctcatgattttttttttacacctaccaccaagactaaaactaaagtct
cttgactgtcctatcccttccccaccgtaggccttccagtttattctctg
tgctccagtaatagttgtctttccaaaatgaaaacctgatagtctctgcc
ttttgcttaaaacctctcgtgttccattgctgttttaataaatagataga
tatccctaacacaaaccctaaagctttcacatatcacatgggccaacctc
actgtgctgctcccactagctgagttagctcagtgttctgaattctctca
gtttaaaatgtttgtcagcaggcagaatattcattcgatctttgccaacc
ttctggctgctgtcaccccctatggtgattttctatttttgtatatagtg
ctgtttatggttttaatgctgtgcttgggtgactaaaatattcccatcta
attcctataagagaacggttttgaggtgaggtgattaggttttgccccac
attttaaggtctgtacttccttggggcattcctttaataaatgagaattc
ccttagc

caccgaggggaagcagtgcaggcagggaggggaagtcccttctgccagtt
ctgcggctgcagttgactccaccttgtctctgccatgccttctaggttta
aagatttctccttgctgccctgcaagtagggctgggccaacaacagactg
accaggcagtgaggagtgcagcagagctttaggcagcacttggggagagc
agaccttttccaaaatgttacagctctcagaacagaaggctcagacgatg
gagtagttctcctacacttttaatccttccggataggatttttacataca
gctttggtgtgggtaagggtctgaaaacaaatgcttctcgttggtttggt
atgagagctttggggaaaccttatttgcatgtgggagggcttggtgctgc
tctgcgggggtggggtggggagctgtaggaggttgtatctattttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81768489_81769646
seq2: B6Ng01-127P11.b_50_1206 (reverse)

seq1  GCTAA-GGATTACTCATTTATTAAGGAAATGCTCACAGGAAAGTAACAGA  49
      ||||| ||| | |||||||||||| | ||||| | || | |||| |||||
seq2  GCTAAGGGAATTCTCATTTATTAAAGGAATGC-CCCAAGGAAGT-ACAGA  48

seq1  CATAAAAAATGTGAGCAAAAACTAAATCACCTCACCTCAAAAACGTTCTC  99
      | |  |||||||| |  |||||  |||||||||||||||||| |||||||
seq2  CCT-TAAAATGTGGGGCAAAACCTAATCACCTCACCTCAAAACCGTTCTC  97

seq1  TTATAGGAATAAGATGGG-ATA-TTTAGTCACCCAAGCACAGCATTAAAA  147
      |||||||||| ||||||| ||| |||||||||||||||||||||||||||
seq2  TTATAGGAATTAGATGGGAATATTTTAGTCACCCAAGCACAGCATTAAAA  147

seq1  CCATAAACAGCACTATATACAAAAATAGAAAAATCACCATAGGGGGTGAC  197
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCATAAACAGCACTATATACAAAAATAG-AAAATCACCATAGGGGGTGAC  196

seq1  AGCAGCCAGAAGGTTGGCAAAGATCGAATGAATATTCTGCCTGCTGACAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCAGAAGGTTGGCAAAGATCGAATGAATATTCTGCCTGCTGACAA  246

seq1  ACATTTTAAACTGAGAGAATTCAGAACACTGAGCTAACTCAGCTAGTGGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAAACTGAGAGAATTCAGAACACTGAGCTAACTCAGCTAGTGGG  296

seq1  AGCAGCACAGTGAGGTTGGCCCATGTGATATGTGAAAGCTTTAGGGTTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCACAGTGAGGTTGGCCCATGTGATATGTGAAAGCTTTAGGGTTTG  346

seq1  TGTTAGGGATATCTATCTATTTATTAAAACAGCAATGGAACACGAGAGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGGATATCTATCTATTTATTAAAACAGCAATGGAACACGAGAGGT  396

seq1  TTTAAGCAAAAGGCAGAGACTATCAGGTTTTCATTTTGGAAAGACAACTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCAAAAGGCAGAGACTATCAGGTTTTCATTTTGGAAAGACAACTA  446

seq1  TTACTGGAGCACAGAGAATAAACTGGAAGGCCTACGGTGGGGAAGGGATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGAGCACAGAGAATAAACTGGAAGGCCTACGGTGGGGAAGGGATA  496

seq1  GGACAGTCAAGAGACTTTAGTTTTAGTCTTGGTGGTAGGTGTAAAAAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTCAAGAGACTTTAGTTTTAGTCTTGGTGGTAGGTGTAAAAAAAA  546

seq1  AATCATGAGAGAACTATTGTAAGATACAAAGCTGATACAGCCATCTCTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAGAGAACTATTGTAAGATACAAAGCTGATACAGCCATCTCTCA  596

seq1  GAAATATTGTTGAGGGACTGGAGAGGTGAGAGATTGCTCAGTGGTTAGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTGTTGAGGGACTGGAGAGGTGAGAGATTGCTCAGTGGTTAGGA  646

seq1  ATACTTGTTGCTACTCATGATTCAGTTCTTAACACCCACATGTTCACTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTTGCTACTCATGATTCAGTTCTTAACACCCACATGTTCACTCA  696

seq1  CAGCTCTCTGTAACTTAAGGCCCAGAGATCCATCACTCTCATTTGACCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCTGTAACTTAAGGCCCAGAGATCCATCACTCTCATTTGACCTT  746

seq1  TGTGGGCACCATCTGGGGCACACACGTATATGCAGACAAAATACTCATAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCACCATCTGGGGCACACACGTATATGCAGACAAAATACTCATAG  796

seq1  GTATAAAATTAAAGTAAATAAATCTTTTAAAAAAATCATTGTTGAAAAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAATTAAAGTAAATAAATCTTTTAAAAAAATCATTGTTGAAAAGG  846

seq1  AATAGGAACAAGGACCATTCCTAGGTGACTTATTTGACAGTTGAAGGCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAACAAGGACCATTCCTAGGTGACTTATTTGACAGTTGAAGGCTC  896

seq1  TTGGGAGGAAAACATACTTAACTCTGACAAGACTGGGTCAAGGTGAGGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGAAAACATACTTAACTCTGACAAGACTGGGTCAAGGTGAGGAC  946

seq1  TCATGGGAGGGAATTCTTCTACTCAATTTTCTTTTCTTATTTTAAGAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGAGGGAATTCTTCTACTCAATTTTCTTTTCTTATTTTAAGAGAA  996

seq1  TCAGGAGAAGATACAAGTAGAATGTAAAAATACATGATCTGAAATCTAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGAAGATACAAGTAGAATGTAAAAATACATGATCTGAAATCTAAG  1046

seq1  GGGACATCCAAGCTGGGTATAAATGTTTGAGAATCACTGGTGAATACCTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATCCAAGCTGGGTATAAATGTTTGAGAATCACTGGTGAATACCTA  1096

seq1  GAGTCAAAGCAGAAGGTGAAGAAAGCAGTAAAGAGCTGGGGAGAGAAGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAAGCAGAAGGTGAAGAAAGCAGTAAAGAGCTGGGGAGAGAAGAG  1146

seq1  TTAGAGAATTC  1158
      |||||||||||
seq2  TTAGAGAATTC  1157


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