BAC Information

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BAC

Clone NameB6Ng01-128F03
Chromosome3 (Build37)
Map Location 28,168,245 - 28,281,116
singlet/doubletdoublet
Overlap geneTnik
Upstream geneLOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1
Downstream geneSlc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128F03.bB6Ng01-128F03.g
ACCDH930203DH930204
length1,031864
definitionDH930203|Mus musculus domesticus DNA, BAC clone: B6Ng01-128F03, 5' end.DH930204|Mus musculus domesticus DNA, BAC clone: B6Ng01-128F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,168,245 - 28,169,291)(28,280,251 - 28,281,116)
sequence
gaattcttgaaacattattaattcattaccccagagcacttaattaaatt
tggtctaaaatgagattttagtaaagttgcacggattgatgacagcatct
taaaatggcaggagcacagctgtcttcctctggatgcatttgttgctttt
ccaagaccttgaacgggtttttaggatttgtcattgtttttcaatgacat
gacctcccactaagataggatgcacccatagctatcagagcatcagtgct
ataggcaaaggcatttttagtgttcattattaactggagtaatctttaat
acaaagtctaatacaactcttagttcgctgtttgcataattatgtgctta
ggagatcatgggatatttcattgatgaaagaatttcaaatgcattttctt
catcaaagtaatacacacacacactcacacacatgcacacacacacaccg
tctctcttatctctaaggctcatggaaagcttatattctgggttttgtcc
cttttttctactctagaattagtctatactccctgctttgatgccactcc
tctttcagtgagaatggtcccttggggctgctgtcattgaatcctggcaa
ccatgcccagttgagtgcagtcatcttctatgctgacagcatttgggaga
gctggagtctgagagatgtttcaaagtcacattactgctcccatcttggg
ggcacggtgtagttttcttaggggtggggtgtagttctcttagaaggaaa
gctagtttgttaccaccctgctgagggtgtccagcaaatccccaggatgt
tttgtgaattaaatgttcttctgtgcatataaatgtgaggttcctatggg
aacgataaggacctcccgggtggttttctccattctgatggtgagggttt
tttttgtttttgctgtttgtttgttttcttagaaagagaaattcctactc
ttctactgccagactgattcaagttgtcaagagatacctgactctgaaat
caccctctcactccaagcataaatttcgtcg
gaattcatgatacccacacagttcaatagctcatggctgagaagtcagca
ggctataccagactcaagaaaagtgagttcttagccaaataactcctctg
tttcaactccattaggatgacacttagccagtcatacctacaaggatacc
aagccaagtggctgactcattagcattctcttttcaagagaacataagca
aagatgcttttaaaaaggataatttttaataatgtgtaccagtatgtagg
tatgtacatgtgtgtgtaggggatctaaagagatcagaagaaggtgtcag
ggccccaggaactggagttacaggtagttgtaaactgcccaatgtgggta
ctgggacctgatcctcctgacagctgcccaatttctccaggcccacaaag
atccttttaaaagaaaacagaacaccataagatatctaatccatgggcgg
agcagaggcagcaatctggaagagtttacagtgtagcacttaggtttgaa
gagtgtgggggtggggataaagatcagagacctaatgtcccaaacaaaaa
gcctttatattagtccacccttctttagacagtaatgagggtggagagga
aagccactcactgtttttgcagtgccaagaagagcttggaaaataacttc
tcagaagggagcgggtacgaagatccagcttagcacctgtgcagacacac
tcctcctgggcacaaagggttgctgtccagatcacacggaggacccacga
aagaaagggctacaggtgatctgacaactgggtgaaagtgtatggattct
tctatgtcccgctaggagatctcagtggggatttattccccttaggggcc
agcagtgctaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_28168245_28169291
seq2: B6Ng01-128F03.b_46_1071

seq1  GAATTCTTGAAACATTATTAATTCATTACCCCAGAGCACTTAATTAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAACATTATTAATTCATTACCCCAGAGCACTTAATTAAATT  50

seq1  TGGTCTAAAATGAGATTTTAGTAAAGTTGCACGGATTGATGACAGCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTAAAATGAGATTTTAGTAAAGTTGCACGGATTGATGACAGCATCT  100

seq1  TAAAATGGCAGGAGCACAGCTGTCTTCCTCTGGATGCATTTGTTGCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGCAGGAGCACAGCTGTCTTCCTCTGGATGCATTTGTTGCTTTT  150

seq1  CCAAGACCTTGAACGGGTTTTTAGGATTTGTCATTGTTTTTCAATGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACCTTGAACGGGTTTTTAGGATTTGTCATTGTTTTTCAATGACAT  200

seq1  GACCTCCCACTAAGATAGGATGCACCCATAGCTATCAGAGCATCAGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCCACTAAGATAGGATGCACCCATAGCTATCAGAGCATCAGTGCT  250

seq1  ATAGGCAAAGGCATTTTTAGTGTTCATTATTAACTGGAGTAATCTTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAAAGGCATTTTTAGTGTTCATTATTAACTGGAGTAATCTTTAAT  300

seq1  ACAAAGTCTAATACAACTCTTAGTTCGCTGTTTGCATAATTATGTGCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTCTAATACAACTCTTAGTTCGCTGTTTGCATAATTATGTGCTTA  350

seq1  GGAGATCATGGGATATTTCATTGATGAAAGAATTTCAAATGCATTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCATGGGATATTTCATTGATGAAAGAATTTCAAATGCATTTTCTT  400

seq1  CATCAAAGTAATACACACACACACTCACACACATGCACACACACACACCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGTAATACACACACACACTCACACACATGCACACACACACACCG  450

seq1  TCTCTCTTATCTCTAAGGCTCATGGAAAGCTTATATTCTGGGTTTTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTATCTCTAAGGCTCATGGAAAGCTTATATTCTGGGTTTTGTCC  500

seq1  CTTTTTTCTACTCTAGAATTAGTCTATACTCCCTGCTTTGATGCCACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTACTCTAGAATTAGTCTATACTCCCTGCTTTGATGCCACTCC  550

seq1  TCTTTCAGTGAGAATGGTCCCTTGGGGCTGCTGTCATTGAATCCTGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGTGAGAATGGTCCCTTGGGGCTGCTGTCATTGAATCCTGGCAA  600

seq1  CCATGCCCAGTTGAGTGCAGTCATCTTCTATGCTGACAGCATTTGGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCCAGTTGAGTGCAGTCATCTTCTATGCTGACAGCATTTGGGAGA  650

seq1  GCTGGAGTCTGAGAGATGTTTCAAAGTCACATTACTGCTCCCATCTTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTCTGAGAGATGTTTCAAAGTCACATTACTGCTCCCATCTTGGG  700

seq1  GGCACGGTGTAGTTTTCTTAGGGGTGGGGTGTAGTTCTCTTAGAAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGGTGTAGTTTTCTTAGGGGTGGGGTGTAGTTCTCTTAGAAGGAAA  750

seq1  GCTAGTTTGTTACCACCCTGCTGAGGGTGTCCAGCAAATCCCCAGGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTGTTACCACCCTGCTGAGGGTGTCCAGCAAATCCCCAGGATGT  800

seq1  TTTGTGAATTAAATGTTCTTCTGTGCATATAAATGTGAGGTTCCTATGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAATTAAATGTTCTTCTGTGCATATAAATGTGAGGTTCCTATGGG  850

seq1  AACGATAAGGACCTCCCGGGTGGTTTTCCCCATTCTGATGGTGAGGGTTT  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AACGATAAGGACCTCCCGGGTGGTTTTCTCCATTCTGATGGTGAGGGTTT  900

seq1  TTTTTGTTTTTGCTGTTTTGTTTTTGTTTTTCTTCAGAAAGAGAAATTTC  950
      ||||||||||||||| |||||||    ||||||| |||||||||||||  
seq2  TTTTTGTTTTTGCTG-TTTGTTT---GTTTTCTT-AGAAAGAGAAATT--  943

seq1  CCTTACCTCTTCCTACTTGCCCAGACTGAGTCTAGTTGTCCCAAGGAGAT  1000
      |||   ||||| |||||   ||||||||| || |||||||   | |||||
seq2  CCT--ACTCTT-CTACT--GCCAGACTGATTCAAGTTGTC---AAGAGAT  985

seq1  ACCCTGAGTCCTGAAAATACACCCTCCTCCACTCCAAGCATAAATTT  1047
      | ||||| | ||||||   |||||||   ||||||||||||||||||
seq2  A-CCTGACT-CTGAAA--TCACCCTC--TCACTCCAAGCATAAATTT  1026

seq1: chr3_28280251_28281116
seq2: B6Ng01-128F03.g_67_930 (reverse)

seq1  ATCCTAGCACTGCTGGCCCCTTAAGGTGAATAAAT-CCCACTGAGATTCT  49
      |||||||||||||||||||| ||||| |||||||| |||||||||| |||
seq2  ATCCTAGCACTGCTGGCCCC-TAAGGGGAATAAATCCCCACTGAGA-TCT  48

seq1  CCCTAGCGGGACATAGAAGAATCCATACACCTTCACCCAGTTGTCAGATC  99
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  -CCTAGCGGGACATAGAAGAATCCATACACTTTCACCCAGTTGTCAGATC  97

seq1  ACCTGTAGCCCTTTCTTTCGTGGGTCCTCCGTGTGATCTGGACAGCAACC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAGCCCTTTCTTTCGTGGGTCCTCCGTGTGATCTGGACAGCAACC  147

seq1  CTTTGTGCCCAGGAGGAGTGTGTCTGCACAGGTGCTAAGCTGGTTCTTCG  199
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTTGTGCCCAGGAGGAGTGTGTCTGCACAGGTGCTAAGCTGGATCTTCG  197

seq1  TACCCGCTCCCTTCTGAGAAGTTATTTTCCAAGCTCTTCTTGGCACTGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGCTCCCTTCTGAGAAGTTATTTTCCAAGCTCTTCTTGGCACTGCA  247

seq1  AAAACAGTGAGTGGCTTTCCTCTCCACCCTCATTACTGTCTAAAGAAGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTGAGTGGCTTTCCTCTCCACCCTCATTACTGTCTAAAGAAGGG  297

seq1  TGGACTAATATAAAGGCTTTTTGTTTGGGACATTAGGTCTCTGATCTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTAATATAAAGGCTTTTTGTTTGGGACATTAGGTCTCTGATCTTTA  347

seq1  TCCCCACCCCCACACTCTTCAAACCTAAGTGCTACACTGTAAACTCTTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCCCCACACTCTTCAAACCTAAGTGCTACACTGTAAACTCTTCC  397

seq1  AGATTGCTGCCTCTGCTCCGCCCATGGATTAGATATCTTATGGTGTTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCTGCCTCTGCTCCGCCCATGGATTAGATATCTTATGGTGTTCTG  447

seq1  TTTTCTTTTAAAAGGATCTTTGTGGGCCTGGAGAAATTGGGCAGCTGTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTAAAAGGATCTTTGTGGGCCTGGAGAAATTGGGCAGCTGTCA  497

seq1  GGAGGATCAGGTCCCAGTACCCACATTGGGCAGTTTACAACTACCTGTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATCAGGTCCCAGTACCCACATTGGGCAGTTTACAACTACCTGTAA  547

seq1  CTCCAGTTCCTGGGGCCCTGACACCTTCTTCTGATCTCTTTAGATCCCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTCCTGGGGCCCTGACACCTTCTTCTGATCTCTTTAGATCCCCT  597

seq1  ACACACACATGTACATACCTACATACTGGTACACATTATTAAAAATTATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATGTACATACCTACATACTGGTACACATTATTAAAAATTATC  647

seq1  CTTTTTAAAAGCATCTTTGCTTATGTTCTCTTGAAAAGAGAATGCTAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAAGCATCTTTGCTTATGTTCTCTTGAAAAGAGAATGCTAATG  697

seq1  AGTCAGCCACTTGGCTTGGTATCCTTGTAGGTATGACTGGCTAAGTGTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCACTTGGCTTGGTATCCTTGTAGGTATGACTGGCTAAGTGTCA  747

seq1  TCCTAATGGAGTTGAAACAGAGGAGTTATTTGGCTAAGAACTCACTTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATGGAGTTGAAACAGAGGAGTTATTTGGCTAAGAACTCACTTTTC  797

seq1  TTGAGTCTGGTATAGCCTGCTGACTTCTCAGCCATGAGCTATTGAACTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTGGTATAGCCTGCTGACTTCTCAGCCATGAGCTATTGAACTGT  847

seq1  GTGGGTATCATGAATTC  866
      |||||||||||||||||
seq2  GTGGGTATCATGAATTC  864