BAC Information

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BAC

Clone NameB6Ng01-128K07
Chromosome3 (Build37)
Map Location 83,049,753 - 83,193,862
singlet/doubletdoublet
Overlap geneDchs2
Upstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
Downstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128K07.bB6Ng01-128K07.g
ACCDH930441DH930442
length1,1431,016
definitionDH930441|Mus musculus domesticus DNA, BAC clone: B6Ng01-128K07, 5' end.DH930442|Mus musculus domesticus DNA, BAC clone: B6Ng01-128K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,192,698 - 83,193,862)(83,049,753 - 83,050,778)
sequence
gaattccaacacataaattctaataaaatatgtgcctgatccctgagcta
tgcattcataacttagatgccaaacatgccagcaagaagcaaaataagta
aatatagttctactgtacaatgtaacaggaagaacagatttattgtatga
gacaatgttccgcaaaactacaattacaaagcacaaatacctagactttg
tttcaaacaaaaccaataaattcgcataacctgactacatgttgtgtatc
agaaactcccttaaaatataacagcacagacaacgaaaagtttaaaagta
acaggaaagaagataaagtgcagtagaatgagggagataacataacagga
tgtctgaaaattcatatggagccatactattaattatgttcctaaaatat
acataggtttgtgtataagtacacatgtgtaaactaaatgaatatttccc
tctgcactatcaatgtttcctctcagactcaaaagccatctaacaaaaac
accagcagcaggcatgaggagcactctttcgagttgctaattggagttgt
ccatgaatcttctaaatcactacaggctatttcaaatacaatgtatttca
aatacattggtattttgaaaaccccaaacaaatattattaataacctcaa
aaacttaaatcatctaaagaatgccaatataagtgtataccagaagccat
taccaaaactccatctgacaaatatttagaaaatatggagcttgctttag
aacaatctaagaatcagtcaaaagggaaaaatataaaataaattgaatat
gattaaaatgaataaagaacacacaaagggtattagaggcagcatcaaga
gtgaatgacataatactgaatatgcattagtaatagaatattaagtcaat
gaagataagtaaactaaacccctgatacatgaaagtaaagaatatataaa
ggatacataaaatcaaaagtatggatacgtaatatcatataaatatatga
tcagtagacaaatataaatcctgatgtaactattcttaagctgtatcatc
ttcttcgagactatttttgtttgtttgaaactactctagacgtaggtgat
caggactgaaccagattaatatactacatgcaagagaacatct
gaattcagcaggtgctcaatgagtttatacacacgagacactgacatctc
atactttgcctccagaagatgccttgctctttgactataagcttaagccc
tctgttgttcagccaacacttgttttttacaggatttcattattaggctc
ctcaatgaatcaagacttttgttatagagggttttctggtgctgtgttat
tttcttcttgttttatcttctcttttcattattttttgtttttgtttttg
cttacctgctttctcagtccttctttcaacctaagaagctattcaagctt
gaggagaaatacattaggagaggaaacagggaaaacaaaaccaagaagac
aggccaccaggagtcgcaggaggctctatgccagctgtcaagtatatttc
ctacatgcttacaggcttacagtctgtttgcaggtctgcagtcccatctc
catgcctctctcaggactactgtaggttatctggctttcctagtgatgga
tcagcacacagacaggttgctgaatgcctaggactttcatatggtcctaa
ccagctatttttgtttctcctgttctaaatagtaactggtagaagtctgg
cacttcattcaatttcatacatgggaaaaaatatcacattatatctaacc
acagatttctcagtcccctttaatccccaaagaatgatatacatgggaca
acagtgagagctgtttctggattcatgattaagttatcagtcacgatgcc
tttctctgtctgccctctccacatgtgttccgagtggctgcatagcccat
ttctcttcccaagccttcttagctgtccttcctttctcattcttcttgat
gcttttctccatagttgagaaagcagtacagagaagaaaatgagcctggg
gggagggcacaagtgagtgaactgtccccctccctacactgctgtgactt
caaggactttgtcagatctgaaagtctcgaaatgtgccagataaaatgga
aaatgtgtcggaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83192698_83193862
seq2: B6Ng01-128K07.b_47_1189 (reverse)

seq1  AGATGTTCTC-TGCATTGTAGTATATTTAATACTGTGTTCAGTCTATGAT  49
      |||||||||| |||| ||||||||| ||||| ||| ||||||||  ||||
seq2  AGATGTTCTCTTGCA-TGTAGTATA-TTAAT-CTG-GTTCAGTC-CTGAT  45

seq1  CACTTTACGTCTAGAGGTATGTTTTCAGACAATACAAAATAGTCTCTGAA  99
      |||  |||||||||||   |  ||||| ||||   ||||||||||| |||
seq2  CAC-CTACGTCTAGAG---TAGTTTCAAACAAACAAAAATAGTCTC-GAA  90

seq1  GAAGATGATACCAGCCTTAAGAATAGTTTACATCAAGGATTTTATAATTT  149
      |||||||||| ||| ||||||||||| ||||||| |||| ||||||  ||
seq2  GAAGATGATA-CAG-CTTAAGAATAG-TTACATC-AGGA-TTTATA--TT  133

seq1  GGTCTTACTGATTCATATATTTATATGATATTTACGTATCCATACTTTTT  199
       ||| |||||| |||||||||||||||||| |||||||||||||| ||||
seq2  TGTC-TACTGA-TCATATATTTATATGATA-TTACGTATCCATAC-TTTT  179

seq1  GATTTTATGTATTCCTTTATATATTCTTTACTTTCATGTATCAGGGGTTT  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATGTA-TCCTTTATATATTCTTTACTTTCATGTATCAGGGGTTT  228

seq1  AGTTTACTTATCTTCATTGACTTAATATTCTATTACTAATTGCATATTCA  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTTTACTTATCTTCATTGACTTAATATTCTATTACTAA-TGCATATTCA  277

seq1  GTATTATGTCATTCACTCTTGATGCTGCCTCTAATACCCTTTGTGTGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATGTCATTCACTCTTGATGCTGCCTCTAATACCCTTTGTGTGTTC  327

seq1  TTTATTCATTTTAATCATATTCAATTTATTTTATATTTTTCCCTTTTGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATTTTAATCATATTCAATTTATTTTATATTTTTCCCTTTTGAC  377

seq1  TGATTCTTAGATTGTTCTAAAGCAAGCTCCATATTTTCTAAATATTTGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTAGATTGTTCTAAAGCAAGCTCCATATTTTCTAAATATTTGTC  427

seq1  AGATGGAGTTTTGGTAATGGCTTCTGGTATACACTTATATTGGCATTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGTTTTGGTAATGGCTTCTGGTATACACTTATATTGGCATTCTT  477

seq1  TAGATGATTTAAGTTTTTGAGGTTATTAATAATATTTGTTTGGGGTTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGATTTAAGTTTTTGAGGTTATTAATAATATTTGTTTGGGGTTTTC  527

seq1  AAAATACCAATGTATTTGAAATACATTGTATTTGAAATAGCCTGTAGTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCAATGTATTTGAAATACATTGTATTTGAAATAGCCTGTAGTGA  577

seq1  TTTAGAAGATTCATGGACAACTCCAATTAGCAACTCGAAAGAGTGCTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGATTCATGGACAACTCCAATTAGCAACTCGAAAGAGTGCTCCT  627

seq1  CATGCCTGCTGCTGGTGTTTTTGTTAGATGGCTTTTGAGTCTGAGAGGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGCTGCTGGTGTTTTTGTTAGATGGCTTTTGAGTCTGAGAGGAA  677

seq1  ACATTGATAGTGCAGAGGGAAATATTCATTTAGTTTACACATGTGTACTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGATAGTGCAGAGGGAAATATTCATTTAGTTTACACATGTGTACTT  727

seq1  ATACACAAACCTATGTATATTTTAGGAACATAATTAATAGTATGGCTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAAACCTATGTATATTTTAGGAACATAATTAATAGTATGGCTCCA  777

seq1  TATGAATTTTCAGACATCCTGTTATGTTATCTCCCTCATTCTACTGCACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTTTCAGACATCCTGTTATGTTATCTCCCTCATTCTACTGCACT  827

seq1  TTATCTTCTTTCCTGTTACTTTTAAACTTTTCGTTGTCTGTGCTGTTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCTTTCCTGTTACTTTTAAACTTTTCGTTGTCTGTGCTGTTATA  877

seq1  TTTTAAGGGAGTTTCTGATACACAACATGTAGTCAGGTTATGCGAATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGGAGTTTCTGATACACAACATGTAGTCAGGTTATGCGAATTTA  927

seq1  TTGGTTTTGTTTGAAACAAAGTCTAGGTATTTGTGCTTTGTAATTGTAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGTTTGAAACAAAGTCTAGGTATTTGTGCTTTGTAATTGTAGT  977

seq1  TTTGCGGAACATTGTCTCATACAATAAATCTGTTCTTCCTGTTACATTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGGAACATTGTCTCATACAATAAATCTGTTCTTCCTGTTACATTGT  1027

seq1  ACAGTAGAACTATATTTACTTATTTTGCTTCTTGCTGGCATGTTTGGCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGAACTATATTTACTTATTTTGCTTCTTGCTGGCATGTTTGGCAT  1077

seq1  CTAAGTTATGAATGCATAGCTCAGGGATCAGGCACATATTTTATTAGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTATGAATGCATAGCTCAGGGATCAGGCACATATTTTATTAGAAT  1127

seq1  TTATGTGTTGGAATTC  1165
      ||||||||||||||||
seq2  TTATGTGTTGGAATTC  1143

seq1: chr3_83049753_83050778
seq2: B6Ng01-128K07.g_66_1081

seq1  GAATTCAGCAGGTGCTCAATGAGTTTATACACACGAGACACTGACATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGGTGCTCAATGAGTTTATACACACGAGACACTGACATCTC  50

seq1  ATACTTTGCCTCCAGAAGATGCCTTGCTCTTTGACTATAAGCTTAAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGCCTCCAGAAGATGCCTTGCTCTTTGACTATAAGCTTAAGCCC  100

seq1  TCTGTTGTTCAGCCAACACTTGTTTTTTACAGGATTTCATTATTAGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTTCAGCCAACACTTGTTTTTTACAGGATTTCATTATTAGGCTC  150

seq1  CTCAATGAATCAAGACTTTTGTTATAGAGGGTTTTCTGGTGCTGTGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGAATCAAGACTTTTGTTATAGAGGGTTTTCTGGTGCTGTGTTAT  200

seq1  TTTCTTCTTGTTTTATCTTCTCTTTTCATTATTTTTTGTTTTTGTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTGTTTTATCTTCTCTTTTCATTATTTTTTGTTTTTGTTTTTG  250

seq1  CTTACCTGCTTTCTCAGTCCTTCTTTCAACCTAAGAAGCTATTCAAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTGCTTTCTCAGTCCTTCTTTCAACCTAAGAAGCTATTCAAGCTT  300

seq1  GAGGAGAAATACATTAGGAGAGGAAACAGGGAAAACAAAACCAAGAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAATACATTAGGAGAGGAAACAGGGAAAACAAAACCAAGAAGAC  350

seq1  AGGCCACCAGGAGTCGCAGGAGGCTCTATGCCAGCTGTCAAGTATATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACCAGGAGTCGCAGGAGGCTCTATGCCAGCTGTCAAGTATATTTC  400

seq1  CTACATGCTTACAGGCTTACAGTCTGTTTGCAGGTCTGCAGTCCCATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGCTTACAGGCTTACAGTCTGTTTGCAGGTCTGCAGTCCCATCTC  450

seq1  CATGCCTCTCTCAGGACTACTGTAGGTTATCTGGCTTTCCTAGTGATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTCTCTCAGGACTACTGTAGGTTATCTGGCTTTCCTAGTGATGGA  500

seq1  TCAGCACACAGACAGGTTGCTGAATGCCTAGGACTTTCATATGGTCCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACACAGACAGGTTGCTGAATGCCTAGGACTTTCATATGGTCCTAA  550

seq1  CCAGCTATTTTTGTTTCTCCTGTTCTAAATAGTAACTGGTAGAAGTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTATTTTTGTTTCTCCTGTTCTAAATAGTAACTGGTAGAAGTCTGG  600

seq1  CACTTCATTCAATTTCATACATGGGAAAAAATATCACATTATATCTAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCATTCAATTTCATACATGGGAAAAAATATCACATTATATCTAACC  650

seq1  ACAGATTTCTCAGTCCCCTTTAATCCCCAAAGAATGATATACATGGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTCTCAGTCCCCTTTAATCCCCAAAGAATGATATACATGGGACA  700

seq1  ACAGTGAGAGCTGTTTCTGGATTCATGATTAAGTTATCAGTCACGATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGAGCTGTTTCTGGATTCATGATTAAGTTATCAGTCACGATGCC  750

seq1  TTTCTCTGTCTGCCCTCTCCACATGTGTTCCGAGTGGCTGCATAGCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTCTGCCCTCTCCACATGTGTTCCGAGTGGCTGCATAGCCCAT  800

seq1  TTCTCTTCCCAAGCCTTCTTAGCTGTCCTTCCTTTCTCATTCTTCTTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCCCAAGCCTTCTTAGCTGTCCTTCCTTTCTCATTCTTCTTGAT  850

seq1  GCTTTTCTCCATAGTTGAGAAAGGCAGTACAGAGAAGAAAAGGAGCCTGG  900
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  GCTTTTCTCCATAGTTGAGAAA-GCAGTACAGAGAAGAAAATGAGCCTGG  899

seq1  GGGGAGGGGCACAAGTGAGTGAACTGTCCCCCCTCCCCTACACTGCTGTG  950
      ||||| ||||||||||||||||||||||||||   |||||||||||||||
seq2  GGGGA-GGGCACAAGTGAGTGAACTGTCCCCC--TCCCTACACTGCTGTG  946

seq1  ACTTTCCAAGGACTTTTGTCAGATCTGAAAGTCTCGAAATGTGCCAGATA  1000
      ||||  ||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTT--CAAGGAC-TTTGTCAGATCTGAAAGTCTCGAAATGTGCCAGATA  993

seq1  GAAATGGAAAATGGTGTCGGGAAGCA  1026
       ||||||||||| ||||| |||||||
seq2  -AAATGGAAAAT-GTGTC-GGAAGCA  1016