BAC Information

Click to search

BAC

Clone NameB6Ng01-128L21
Chromosome3 (Build37)
Map Location 28,423,078 - 28,582,041
singlet/doubletdoublet
Overlap geneTnik
Upstream geneFndc3b, E030011K20Rik, Pld1
Downstream geneSlc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128L21.bB6Ng01-128L21.g
ACCDH930512DH930513
length1,191852
definitionDH930512|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L21, 5' end.DH930513|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,580,819 - 28,582,041)(28,423,078 - 28,423,922)
sequence
gaattcacactcacaagacttaggagcactagagacctggctttgttctc
tgtctgcaagggttgaatccttgagcatgggcaagtcttgcttcatgttt
ttttttgatacagtttgtaaggcaaggcagatgagctcttattatctcct
gcaagatgggaagagcattagttttagggattactgtagaacaaaatgac
ctagtctggaggtggtgctcagaacaaagcagaacacacatgatccgaac
acaccgtgatcacttgctggtgttggctggcaatgtttctatgctctcag
tttctgtaactctctcttctcaacaaacgtgctgtccaacagctaacatg
gattccttgggacctttgagctggctagctagagaagctatgctcggttt
tcccatctacagtttgtgatatttggccatcatggaatttttaattggaa
gagcaaggggccatttactgagtgggtatcccccagatttgtattgttca
taccccagaggtgtgacagtctgtggcaaattggtttgacagatgtgtat
tgatggcaatttctcggtgagcactgtcctaaattaattaatcaccaggc
aatttaatctaaattgaatgctagtgctgcaaacagaaaattttgtttat
aatccttgaatcatcccagtttaaatgaagtcaattaaaatgctctgttc
ctaaccactttttccaattgaatatacctaaatggacacagtactctgca
gggcatctttctcttatgagttggtctctctttaatgtccttgggttaat
cattttcagatactctttgagctattttctgccattgctttgaaaagcat
ttgcaggtcatttgcaggctgctgagggaagctgatgaggtggacataaa
tacgggagcgaagatcatgaggtcttgttgagagttaacaacatgtgctc
tgtgttattgatcaacagggtcaccagtgaaagagcagtgtcagggccaa
aggagtcgattgtcagctgtttatgagatagagctcaggaatgcatggaa
acagcgatggtgcaacccatgtgacagttggtgacccaaggctcctttgg
ctcgggatcttgaaggcccaacttaatagccgccttcttcctgggaggcg
ttaacgcctgtgtactgatggcctctcaaaatcctgggagt
gaattctctcgggatctggaaaattatctcagaattgaccttcagaagtc
actgaggttgtaaaatgaagtggttggacttcatggttctctgccaagac
ctatgctctgtgccatgtgaagaagactgaaatcagggctgactccatgc
ttctgtcatatctaggagaggtggagaataaagcacattcttggcaaaag
ttatacacgtgtgtgtttgcatatgtgtgcatgtgtgaatacatatgtgt
atatgcatgtgcatatgtgtttgtatacatgcctgtgtatgtgtgcatga
gaggggggagagagagatgttggaactagagcttctcataaactccatta
ctaagtaatatttctacctcaacactgcaaagaaacaatattgtgtttca
tagtaatagacaactggcaaaaatctatagcaatcaaccatgtgaattgc
gaaatgtgtcaggactcagttcttagaaaacaaccttttttacttagaca
gacatagttattcaagtaatccaagcatttatttttataatctattcaca
ttataccatgctctttttagaatccatccttcaggccccaagccagtccc
catctgcttaagcacacttctctcaccgaattcaatttagcctcctttct
ttcttcccaagtggtaggaatagttttctgacccagttgtttagaggata
cttgatgatttttaaatctctgattttctttcagtatcctgtctgacact
tcccattactgcctccttcccttggaacaacacgttgtctggagggtaga
ctgtctcttttgcttttgtgggtcaaacttgatcaaaatgacttggcacg
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_28580819_28582041
seq2: B6Ng01-128L21.b_50_1240 (reverse)

seq1  ACTCCCAGGATATCTGAAGAGGTGCATTCAGTGTTTACACAGGCGTTTAC  50
      ||||||||||| | || ||||  ||  ||||    |||||||||||| ||
seq2  ACTCCCAGGAT-TTTG-AGAG--GCCATCAG----TACACAGGCGTTAAC  42

seq1  AGCCTCCCAGGGAGGAAGGCGGGGCTAATAAAGTTGGGCACTTTTCAGAG  100
       |||||||| ||| ||||||  |||| || |||||||||    |||| ||
seq2  -GCCTCCCA-GGAAGAAGGC--GGCT-ATTAAGTTGGGC---CTTCA-AG  83

seq1  ATCCACGAGGCAAAGGAGCCTTTGGGTCAACAACTTGTCCACATGGGGTT  150
      |||| |||| |||||||||| |||||||| |||| ||| ||||| |||||
seq2  ATCC-CGAGCCAAAGGAGCC-TTGGGTCACCAAC-TGT-CACAT-GGGTT  128

seq1  GCACCATCTGCTTGTTTCCATGCATTCCTGGAGCTCCTATCTCATAAACA  200
      |||||||| || ||||||||||||||||| ||||| ||||||||||||||
seq2  GCACCATC-GC-TGTTTCCATGCATTCCT-GAGCT-CTATCTCATAAACA  174

seq1  GCTGACATTCGACTCCTTTGGCCCTGACACTGCTCCTTTCACTGGTGACC  250
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  GCTGACAATCGACTCCTTTGGCCCTGACACTGCT-CTTTCACTGGTGACC  223

seq1  CTGTTGATCAATAACACAGAGCAACATTGTTTGTTAACTCTCAACAAGGA  300
      |||||||||||||||||||||| ||||   ||||||||||||||||| ||
seq2  CTGTTGATCAATAACACAGAGC-ACAT--GTTGTTAACTCTCAACAA-GA  269

seq1  CCTCATGATCTTCGCTCCCGTATTTTATGTCCACCTCATCAGCTTCCCTC  350
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTCATGATCTTCGCTCCCGTA-TTTATGTCCACCTCATCAGCTTCCCTC  318

seq1  AGCAGCCTGCAAATGACCTGCAAATGCTTTTCAAAGCAATGGCAGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTGCAAATGACCTGCAAATGCTTTTCAAAGCAATGGCAGAAAAT  368

seq1  AGCTCAAAGAGTATCTGAAAATGATTAACCCAAGGACATTAAAGAGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAAGAGTATCTGAAAATGATTAACCCAAGGACATTAAAGAGAGAC  418

seq1  CAACTCATAAGAGAAAGATGCCCTGCAGAGTACTGTGTCCATTTAGGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCATAAGAGAAAGATGCCCTGCAGAGTACTGTGTCCATTTAGGTAT  468

seq1  ATTCAATTGGAAAAAGTGGTTAGGAACAGAGCATTTTAATTGACTTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTGGAAAAAGTGGTTAGGAACAGAGCATTTTAATTGACTTCATT  518

seq1  TAAACTGGGATGATTCAAGGATTATAAACAAAATTTTCTGTTTGCAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGGGATGATTCAAGGATTATAAACAAAATTTTCTGTTTGCAGCAC  568

seq1  TAGCATTCAATTTAGATTAAATTGCCTGGTGATTAATTAATTTAGGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCAATTTAGATTAAATTGCCTGGTGATTAATTAATTTAGGACAG  618

seq1  TGCTCACCGAGAAATTGCCATCAATACACATCTGTCAAACCAATTTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACCGAGAAATTGCCATCAATACACATCTGTCAAACCAATTTGCCA  668

seq1  CAGACTGTCACACCTCTGGGGTATGAACAATACAAATCTGGGGGATACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTCACACCTCTGGGGTATGAACAATACAAATCTGGGGGATACCC  718

seq1  ACTCAGTAAATGGCCCCTTGCTCTTCCAATTAAAAATTCCATGATGGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTAAATGGCCCCTTGCTCTTCCAATTAAAAATTCCATGATGGCCA  768

seq1  AATATCACAAACTGTAGATGGGAAAACCGAGCATAGCTTCTCTAGCTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCACAAACTGTAGATGGGAAAACCGAGCATAGCTTCTCTAGCTAGC  818

seq1  CAGCTCAAAGGTCCCAAGGAATCCATGTTAGCTGTTGGACAGCACGTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAAAGGTCCCAAGGAATCCATGTTAGCTGTTGGACAGCACGTTTG  868

seq1  TTGAGAAGAGAGAGTTACAGAAACTGAGAGCATAGAAACATTGCCAGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAGAGAGAGTTACAGAAACTGAGAGCATAGAAACATTGCCAGCCA  918

seq1  ACACCAGCAAGTGATCACGGTGTGTTCGGATCATGTGTGTTCTGCTTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGCAAGTGATCACGGTGTGTTCGGATCATGTGTGTTCTGCTTTGT  968

seq1  TCTGAGCACCACCTCCAGACTAGGTCATTTTGTTCTACAGTAATCCCTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCACCACCTCCAGACTAGGTCATTTTGTTCTACAGTAATCCCTAA  1018

seq1  AACTAATGCTCTTCCCATCTTGCAGGAGATAATAAGAGCTCATCTGCCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGCTCTTCCCATCTTGCAGGAGATAATAAGAGCTCATCTGCCTT  1068

seq1  GCCTTACAAACTGTATCAAAAAAAAACATGAAGCAAGACTTGCCCATGCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACAAACTGTATCAAAAAAAAACATGAAGCAAGACTTGCCCATGCT  1118

seq1  CAAGGATTCAACCCTTGCAGACAGAGAACAAAGCCAGGTCTCTAGTGCTC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATTCAACCCTTGCAGACAGAGAACAAAGCCAGGTCTCTAGTGCTC  1168

seq1  CTAAGTCTTGTGAGTGTGAATTC  1223
      |||||||||||||||||||||||
seq2  CTAAGTCTTGTGAGTGTGAATTC  1191

seq1: chr3_28423078_28423922
seq2: B6Ng01-128L21.g_68_919

seq1  GAATTCTCTCGGGATCTGGAAAATTATCTCAGAATTGACCTTCAGAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCGGGATCTGGAAAATTATCTCAGAATTGACCTTCAGAAGTC  50

seq1  ACTGAGGTTGTAAAATGAAGTGGTTGGACTTCATGGTTCTCTGCCAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGTTGTAAAATGAAGTGGTTGGACTTCATGGTTCTCTGCCAAGAC  100

seq1  CTATGCTCTGTGCCATGTGAAGAAGACTGAAATCAGGGCTGACTCCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTCTGTGCCATGTGAAGAAGACTGAAATCAGGGCTGACTCCATGC  150

seq1  TTCTGTCATATCTAGGAGAGGTGGAGAATAAAGCACATTCTTGGCAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCATATCTAGGAGAGGTGGAGAATAAAGCACATTCTTGGCAAAAG  200

seq1  TTATACACGTGTGTGTTTGCATATGTGTGCATGTGTGAATACATATGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACGTGTGTGTTTGCATATGTGTGCATGTGTGAATACATATGTGT  250

seq1  ATATGCATGTGCATATGTGTTTGTATACATGCCTGTGTATGTGTGCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATGTGCATATGTGTTTGTATACATGCCTGTGTATGTGTGCATGA  300

seq1  GAGGGGGGAGAGAGAGATGTTGGAACTAGAGCTTCTCATAAACTCCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGGAGAGAGAGATGTTGGAACTAGAGCTTCTCATAAACTCCATTA  350

seq1  CTAAGTAATATTTCTACCTCAACACTGCAAAGAAACAATATTGTGTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTAATATTTCTACCTCAACACTGCAAAGAAACAATATTGTGTTTCA  400

seq1  TAGTAATAGACAACTGGCAAAAATCTATAGCAATCAACCATGTGAATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATAGACAACTGGCAAAAATCTATAGCAATCAACCATGTGAATTGC  450

seq1  GAAATGTGTCAGGACTCAGTTCTTAGAAAACAACCTTTTTTACTTAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGTCAGGACTCAGTTCTTAGAAAACAACCTTTTTTACTTAGACA  500

seq1  GACATAGTTATTCAAGTAATCCAAGCATTTATTTTTATAATCTATTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGTTATTCAAGTAATCCAAGCATTTATTTTTATAATCTATTCACA  550

seq1  TTATACCATGCTCTTTTTAGAATCCATCCTTCAGGCCCCAAGCCAGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCATGCTCTTTTTAGAATCCATCCTTCAGGCCCCAAGCCAGTCCC  600

seq1  CATCTGCTTAAGCACACTTCTCTCACCGAATTCAATTTAGCCTCCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTTAAGCACACTTCTCTCACCGAATTCAATTTAGCCTCCTTTCT  650

seq1  TTCTTCCCAAGTGGTAGGAATAG-TTTCTGACCCAGTTGTTCAGAGGATA  699
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  TTCTTCCCAAGTGGTAGGAATAGTTTTCTGACCCAGTTGTTTAGAGGATA  700

seq1  C-TGATGATTTTTAAATCTCTGA-TTTCTTTCAGTATCCTGTCTGACACT  747
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTGATGATTTTTAAATCTCTGATTTTCTTTCAGTATCCTGTCTGACACT  750

seq1  T-CCATTACTGCCTCCTT-CCTTGGAACAACACGTTGTCTGGAGGGTAGA  795
      | |||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCCATTACTGCCTCCTTCCCTTGGAACAACACGTTGTCTGGAGGGTAGA  800

seq1  CTGTCTCTTT--GTTTTGTGGTACAAACTTGAGCAAAATGACTTGGCACT  843
      ||||||||||   ||||||||  ||||||||| |||||||||||||||| 
seq2  CTGTCTCTTTTGCTTTTGTGGGTCAAACTTGATCAAAATGACTTGGCACG  850

seq1  GT  845
      ||
seq2  GT  852