BAC Information

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BAC

Clone NameB6Ng01-129J13
Chromosome3 (Build37)
Map Location 88,085,556 - 88,218,945
singlet/doubletdoublet
Overlap gene1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44
Upstream geneCd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg
Downstream geneLOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129J13.bB6Ng01-129J13.g
ACCDH931138DH931139
length1,2171,020
definitionDH931138|Mus musculus domesticus DNA, BAC clone: B6Ng01-129J13, 5' end.DH931139|Mus musculus domesticus DNA, BAC clone: B6Ng01-129J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,085,556 - 88,086,726)(88,217,918 - 88,218,945)
sequence
gaattcagtaggaattcagtgaggttacctattcagtaacattcaaattt
acttccagcagagatggtgaaactaattaggcattacaaagaacggagct
agaatagctcagagctagtctgcagagtgattacttaggacttaggacag
tacccagtctcacccagacaagggactacacaatggccgagagaataggt
ggatttaccatgaaagagttagggaatccccctgagacaggtttcttcac
taggcccaaaggaacagcataatcaggcatttactaagaacccctggtgg
tgggcttagcaatagactagcattacacctggctcccttcttaatggtaa
acagtggcctggtcccccaccatcttttgatgtatacattccttttgttt
tgtgtcactgtaactcgcctggtttcttgttattcttctgtattaaaagt
ttgatgatttgacaaattacactcagattcaacacgctctctcgtgtcgt
ctctgtttgtcacccactttcaccaactccttcgcccacctgcaaccaga
gaccctttccaaaaaatgtctgcggcattcactgacattagaactagcat
ctccatgctgtcatcactaaggaccagcatctccaggccaatgtaactaa
ggaccagcatctgtagggtgctatcactaaggaccagcatcttcctagga
accttccagatgtcagctggaacagctaaggcacctagcctcaaggagtg
agcatctactgggtttgcagcctctcaggtgtgtaaagcagctgatgtca
gtgtgaactagcttaataaattctctctctctctctccacacacacacac
acacacacacacacacacacacacacacaccacacacacccctactctat
tggttctgtcctcttgagaacagtttacatggtgtttatcccaagtgcct
tgtgcaatgatttaatatcagtaggcacctattagaattgtgtaaactaa
atcatgtgtaacacatacataacttggggctaggcatgtactcaggtgcg
tggcgaatgtctaacatgcggaaggcactggggttcacacctgagccacc
acccactcagaacataagctccgaatctggcaatgctcttgaaagaagag
aaaaggaaccgactctaaccatgtctttgttccagctcattatgaaatgg
gcaggatagtaacagtt
gaattcctgatcttcctgagttctgggatcacaggaaaatgccgggtgtt
tggacttttgttgtttttgagacaaagactcatagttcaacaaggctgtc
ctcaaattcacttagccctgaggatggccttgaactcttgattctcctgc
ctccaccctccatagagtgatgaaaggtgcttgtcaccagccagctaaga
aacctgcatgggttttgtttgtttctgttttgttttttgtgttttatttt
gtgtgtatgtggaccagaggttaactagcagtagttggtttctctctact
atatgggttccagggcattgaactctgatcatctggcttgatggtaaaag
ctgagctacatcgctggcctgacagacttttaaaaatacgtttcacaggt
tgtactctttagacttttccaaaaccctaacaactcttggtgctgcccag
gaattgtagtcctattctaaggtcaactctgtagacagcacggagaaaga
ggatctaaatatggtacattatatgcaaagggtagattttgctgtatcaa
gtcttaggtttacagcaagaggggctcttaatgtgtaactagggtaactt
aggaagaaaggtggagaatcaagagagatatatgggagaagggttccagg
tatggtgagaacaggaagaaagaaaaggaacgttaacaggttgggtaaag
ttgatttttggggccactagagtgtccaaagagagggacaacagatagaa
agtatttttgcccctaggaaaaagtgcttcttccacatttaaaagtcaat
actctggcacctggctgggcctccagtgtctttcccttggagaatcaggg
ttggcctcattctttccttacccctccttggtgttctaagagccaaccct
agggattgcccataggcccctgctctaaggagctaccagccagagcatgg
ctaagctgaacttgcccttgccaggactaaggaggtgtggaagcagagtg
atctgtgagatgtctgaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88085556_88086726
seq2: B6Ng01-129J13.b_112_1264

seq1  TGGTGAAACTAATTAGGCATTACAAAGAACGGAGCTAGAATAGCTCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAACTAATTAGGCATTACAAAGAACGGAGCTAGAATAGCTCAGAG  50

seq1  CTAGTCTGCAGAGTGATTACTTAGGACTTAGGACAGTACCCAGTCTCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTGCAGAGTGATTACTTAGGACTTAGGACAGTACCCAGTCTCACC  100

seq1  CAGACAAGGGACTACACAATGGCCGAGAGAATAGGTGGATTTACCATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGGGACTACACAATGGCCGAGAGAATAGGTGGATTTACCATGAA  150

seq1  AGAGTTAGGGAATCCCCCTGAGACAGGTTTCTTCACTAGGCCCAAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAGGGAATCCCCCTGAGACAGGTTTCTTCACTAGGCCCAAAGGAA  200

seq1  CAGCATAATCAGGCATTTACTAAGAACCCCTGGTGGTGGGCTTAGCAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAATCAGGCATTTACTAAGAACCCCTGGTGGTGGGCTTAGCAATA  250

seq1  GACTAGCATTACACCTGGCTCCCTTCTTAATGGTAAACAGTGGCCTGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGCATTACACCTGGCTCCCTTCTTAATGGTAAACAGTGGCCTGGTC  300

seq1  CCCCACCATCTTTTGATGTATACATTCCTTTTGTTTTGTGTCACTGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCATCTTTTGATGTATACATTCCTTTTGTTTTGTGTCACTGTAAC  350

seq1  TCGCCTGGTTTCTTGTTATTCTTCTGTATTAAAAGTTTGATGATTTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTGGTTTCTTGTTATTCTTCTGTATTAAAAGTTTGATGATTTGACA  400

seq1  AATTACACTCAGATTCAACACGCTCTCTCGTGTCGTCTCTGTTTGTCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACTCAGATTCAACACGCTCTCTCGTGTCGTCTCTGTTTGTCACC  450

seq1  CACTTTCACCAACTCCTTCGCCCACCTGCAACCAGAGACCCTTTCCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCACCAACTCCTTCGCCCACCTGCAACCAGAGACCCTTTCCAAAA  500

seq1  AATGTCTGCGGCATTCACTGACATTAGAACTAGCATCTCCATGCTGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGCGGCATTCACTGACATTAGAACTAGCATCTCCATGCTGTCAT  550

seq1  CACTAAGGACCAGCATCTCCAGGCCAATGTAACTAAGGACCAGCATCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGGACCAGCATCTCCAGGCCAATGTAACTAAGGACCAGCATCTGT  600

seq1  AGGGTGCTATCACTAAGGACCAGCATCTTCCTAGGAACCTTCCAGATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCTATCACTAAGGACCAGCATCTTCCTAGGAACCTTCCAGATGTC  650

seq1  AGCTGGAACAGCTAAGGCACCTAGCCTCAAGGAGTGAGCATCTACTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAACAGCTAAGGCACCTAGCCTCAAGGAGTGAGCATCTACTGGGT  700

seq1  TTGCAGCCTCTCAGGTGTGTAAAGCAGCTGATGTCAGTGTGAACTAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCCTCTCAGGTGTGTAAAGCAGCTGATGTCAGTGTGAACTAGCTT  750

seq1  AATAAATTCTCTCTCTCTCTCTCCACACACACACACACACACACACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTCTCTCTCTCTCTCTCCACACACACACACACACACACACACAC  800

seq1  ACACACACACACACACCCACACACACCCCTACTCTATTGGTTCTGTTCCT  850
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  ACACACACACACACA-CCACACACACCCCTACTCTATTGGTTCTG-TCCT  848

seq1  CTTGAGAACAGTTTACATGGTGTTTATCCCCAAGTGCCTTGTGCAATGAT  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTGAGAACAGTTTACATGGTGTTTAT-CCCAAGTGCCTTGTGCAATGAT  897

seq1  TTATACTCAGTAGGCACCTATTAGAAATGTGTAAACTAAATCATGTGTAA  950
      |||   |||||||||||||||||||| |||||||||||||||||||||||
seq2  TTAATATCAGTAGGCACCTATTAGAATTGTGTAAACTAAATCATGTGTAA  947

seq1  CACATACAT-ACTTGGGGCTATGCATGTTACTCAGTGGCGTGGCGAATGT  999
      ||||||||| ||||||||||| ||||| |||||||  |||||||||||||
seq2  CACATACATAACTTGGGGCTAGGCATG-TACTCAGGTGCGTGGCGAATGT  996

seq1  CTAACATGCGGAGGGCACTGGGTTCAACACCTGAGCACACACACACACAC  1049
      |||||||||||| ||||||||| |  |||||||||| ||| ||| ||| |
seq2  CTAACATGCGGAAGGCACTGGGGTTCACACCTGAGC-CAC-CACCCACTC  1044

seq1  AGAACATAACGCCCAGATTCTGCCAGTGGCTCTTGAAAAGAGAGAAAAGG  1099
      ||||||||| || | || |||| || | ||||||||||  ||||||||||
seq2  AGAACATAA-GCTCCGAATCTGGCAAT-GCTCTTGAAAGAAGAGAAAAGG  1092

seq1  AAGCAGACTCAGACCCATGTCTTTGTTCCACAGCTCATTTATGGAATTGG  1149
      || | |||||  | ||||||||||||||  ||||||| ||||| |||  |
seq2  AA-CCGACTC-TAACCATGTCTTTGTTC--CAGCTCA-TTATGAAAT--G  1135

seq1  GGCAGGTGATTTAGTAACAGTT  1171
      ||||||     |||||||||||
seq2  GGCAGG----ATAGTAACAGTT  1153

seq1: chr3_88217918_88218945
seq2: B6Ng01-129J13.g_69_1088 (reverse)

seq1  CCCTCTGACATCTCACATGATCACTCTGCTTCCACAACCTCCCTTAGTCC  50
      ||||| ||||||||||| ||||||||||||||||| |||| |||||||||
seq2  CCCTCAGACATCTCACA-GATCACTCTGCTTCCAC-ACCT-CCTTAGTCC  47

seq1  TGGCAAGGGCAAGTTCAGCTTAGCCCATGCCTCTGGCCTGGTAGCTCCTT  100
      ||||||||||||||||||||||| ||||| |||||| |||||||||||||
seq2  TGGCAAGGGCAAGTTCAGCTTAG-CCATG-CTCTGG-CTGGTAGCTCCTT  94

seq1  AGAGCAGGGGGCCTATGGGCAATCCCTAGGGTTGGCTCCTAGGACACCCA  150
      |||||| ||||||||||||||||||||||||||||||| ||| ||| |||
seq2  AGAGCA-GGGGCCTATGGGCAATCCCTAGGGTTGGCTCTTAGAACA-CCA  142

seq1  AGGAGGGGTAAGGAAAGAATGAGGCCAACCCTGATTCTCCAAGGTAAAGA  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGAGGGGTAAGGAAAGAATGAGGCCAACCCTGATTCTCCAAGGGAAAGA  192

seq1  CACTGGAGGCCCAGCCAGGTGCCAGAGTATTGACTTTTAAATGTTGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACTGGAGGCCCAGCCAGGTGCCAGAGTATTGACTTTTAAATG-TGGAAG  241

seq1  AAGCACTTTTTCCTAGGGGCAAAAATAC-TTCTATCTGTTGTCCCTCTCT  299
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGCACTTTTTCCTAGGGGCAAAAATACTTTCTATCTGTTGTCCCTCTCT  291

seq1  TTGGACACTCTAGTGGCCCCAAAAATCAACTTTACCCAACCTGTTAACGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACTCTAGTGGCCCCAAAAATCAACTTTACCCAACCTGTTAACGT  341

seq1  TCCTTTTCTTTCTTCCTGTTCTCACCATACCTGGAACCCTTCTCCCATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTTTCTTCCTGTTCTCACCATACCTGGAACCCTTCTCCCATAT  391

seq1  ATCTCTCTTGATTCTCCACCTTTCTTCCTAAGTTACCCTAGTTACACATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTTGATTCTCCACCTTTCTTCCTAAGTTACCCTAGTTACACATT  441

seq1  AAGAGCCCCTCTTGCTGTAAACCTAAGACTTGATACAGCAAAATCTACCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCCCTCTTGCTGTAAACCTAAGACTTGATACAGCAAAATCTACCC  491

seq1  TTTGCATATAATGTACCATATTTAGATCCTCTTTCTCCGTGCTGTCTACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATATAATGTACCATATTTAGATCCTCTTTCTCCGTGCTGTCTACA  541

seq1  GAGTTGACCTTAGAATAGGACTACAATTCCTGGGCAGCACCAAGAGTTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGACCTTAGAATAGGACTACAATTCCTGGGCAGCACCAAGAGTTGT  591

seq1  TAGGGTTTTGGAAAAGTCTAAAGAGTACAACCTGTGAAACGTATTTTTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTTTGGAAAAGTCTAAAGAGTACAACCTGTGAAACGTATTTTTAA  641

seq1  AAGTCTGTCAGGCCAGCGATGTAGCTCAGCTTTTACCATCAAGCCAGATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTCAGGCCAGCGATGTAGCTCAGCTTTTACCATCAAGCCAGATG  691

seq1  ATCAGAGTTCAATGCCCTGGAACCCATATAGTAGAGAGAAACCAACTACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGTTCAATGCCCTGGAACCCATATAGTAGAGAGAAACCAACTACT  741

seq1  GCTAGTTAACCTCTGGTCCACATACACACAAAATAAAACACAAAAAACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTAACCTCTGGTCCACATACACACAAAATAAAACACAAAAAACAA  791

seq1  AACAGAAACAAACAAAACCCATGCAGGTTTCTTAGCTGGCTGGTGACAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAACAAACAAAACCCATGCAGGTTTCTTAGCTGGCTGGTGACAAG  841

seq1  CACCTTTCATCACTCTATGGAGGGTGGAGGCAGGAGAATCAAGAGTTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCATCACTCTATGGAGGGTGGAGGCAGGAGAATCAAGAGTTCAA  891

seq1  GGCCATCCTCAGGGCTAAGTGAATTTGAGGACAGCCTTGTTGAACTATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCCTCAGGGCTAAGTGAATTTGAGGACAGCCTTGTTGAACTATGA  941

seq1  GTCTTTGTCTCAAAAACAACAAAAGTCCAAACACCCGGCATTTTCCTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTCTCAAAAACAACAAAAGTCCAAACACCCGGCATTTTCCTGTG  991

seq1  ATCCCAGAACTCAGGAAGATCAGGAATTC  1028
      |||||||||||||||||||||||||||||
seq2  ATCCCAGAACTCAGGAAGATCAGGAATTC  1020