BAC Information

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BAC

Clone NameB6Ng01-129L06
Chromosome3 (Build37)
Map Location 122,047,476 - 122,235,154
singlet/doubletdoublet
Overlap geneLOC100043726, Bcar3
Upstream geneAlg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117
Downstream geneFnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129L06.bB6Ng01-129L06.g
ACCDH931217DH931218
length311960
definitionDH931217|Mus musculus domesticus DNA, BAC clone: B6Ng01-129L06, 5' end.DH931218|Mus musculus domesticus DNA, BAC clone: B6Ng01-129L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,047,476 - 122,047,786)(122,234,184 - 122,235,154)
sequence
catccggccttccaactggaggccaagactcagtgttaacaaagacagtt
tcatttcttggactgtgggggtgctacaatcaccctttaagtggccattc
aattttgctttaagtaagcactttgatttgaaacacttttattacaaagt
gaaaaagtcccttaaatgatgagcagagaagtgactggtcagaatttaga
caccaaagttgtcaaagtaacttccgggatgcaacatcttagtcataaaa
tcaactcctgacttagatgtgttgggatacaggtgtgtgtgtgtgagtgt
gtgtgtgtgtg
gaattcaactacttgagttctttgtatatattggatattagccccctatc
ggatttaggattgataaaggtcttagtcagttggtggcctttttgtctta
ttgacagtgtcctttgccttacagacgctttgcaattttatgaggtccca
tttgtcgattcttgatcttacagcacaagccattggtgtacagaaccact
tctattctgtttgtttccatagctagttgtttaagagtttggagaagtca
ttcctgcccccactgagtagcagtgtggccttcaggtactaaagtcctaa
cagtcgtctatgttgaactgtagcttcatattgagcttttctatctagca
agacaaatgtgagtctatctagcaggctgtatcatcaggggtcacagtaa
gtcggtaccttgattttgatgggcagttttcaagttttactgtagacctg
cctagtgagaacagtggcggcgaagcctcacggcaggttacagtctttct
tcttggagtgaacacaggcatattctgcagtgtggtggttagggttaggt
gtctatttgcctaggttaagggatacctagaacactggagggaaagtatt
agtgggaatgttggctgttctagaggctggcatgtgagttggtggggaaa
aggccaccttagtgtagatggacactcactgggcagggagcttaggcagg
acatgaacccagagcagcagtggatctccttctggagcagggcgttcctc
ctcccttgagctttatgacccctttggattcaagtactgattagcagaga
ctcccagcattctgggcctttgccctggactggaaagttacattgccggt
tttgctgattctgaggcccttgagttggactgagcagcctacagcatcct
gtggtctccacatagcgtgtagtcagtctccaacccctcctcagtctgag
aattacattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122047476_122047786
seq2: B6Ng01-129L06.b_53_363

seq1  CATCCGGCCTTCCAACTGGAGGCCAAGACTCAGTGTTAACAAAGACAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGGCCTTCCAACTGGAGGCCAAGACTCAGTGTTAACAAAGACAGTT  50

seq1  TCATTTCTTGGACTGTGGGGGTGCTACAATCACCCTTTAAGTGGCCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTTGGACTGTGGGGGTGCTACAATCACCCTTTAAGTGGCCATTC  100

seq1  AATTTTGCTTTAAGTAAGCACTTTGATTTGAAACACTTTTATTACAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCTTTAAGTAAGCACTTTGATTTGAAACACTTTTATTACAAAGT  150

seq1  GAAAAAGTCCCTTAAATGATGAGCAGAGAAGTGACTGGTCAGAATTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTCCCTTAAATGATGAGCAGAGAAGTGACTGGTCAGAATTTAGA  200

seq1  CACCAAAGTTGTCAAAGTAACTTCCGGGATGCAACATCTTAGTCATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGTTGTCAAAGTAACTTCCGGGATGCAACATCTTAGTCATAAAA  250

seq1  TCAACTCCTGACTTAGATGTGTTGGGATACAGGTGTGTGTGTGTGAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCCTGACTTAGATGTGTTGGGATACAGGTGTGTGTGTGTGAGTGT  300

seq1  GTGTGTGTGTG  311
      |||||||||||
seq2  GTGTGTGTGTG  311

seq1: chr3_122234184_122235154
seq2: B6Ng01-129L06.g_69_1028 (reverse)

seq1  AAATGTAATTCTGTAAAGACTGAGGAGGGGGTTTAGTAGAACTGACTTAC  50
      ||||||||||||    |||||||||||||| |  ||    |||||| |||
seq2  AAATGTAATTCT---CAGACTGAGGAGGGGTTGGAG----ACTGAC-TAC  42

seq1  ACGCTTATGGTGGAGACCCCAAGATGCTGTAGGCTTGCTCAGTCCAACTC  100
      |||| ||| ||||||||| || |||||||||||| |||||||||||||| 
seq2  ACGC-TAT-GTGGAGACCACAGGATGCTGTAGGC-TGCTCAGTCCAACT-  88

seq1  CAAAGGCCTCAGAATCAGCAAAACCGACAGTGTAACTTT-CAGTCCAGGG  149
      ||| |||||||||||||||||||||| || ||||||||| ||||||||||
seq2  CAAGGGCCTCAGAATCAGCAAAACCGGCAATGTAACTTTCCAGTCCAGGG  138

seq1  CAAAGGCCCAAGATGCTGGGAGTCTCTGCT-ATCAGTACTTGAGTCCAAA  198
      ||||||||||  |||||||||||||||||| |||||||||||| ||||||
seq2  CAAAGGCCCAGAATGCTGGGAGTCTCTGCTAATCAGTACTTGAATCCAAA  188

seq1  GGGGTCATAAAGCTCAAGGGAGGAGGAACGCCCCTGCTCCAG-AGGAGAA  247
      |||||||||||||||||||||||||||||| ||||||||||| ||||| |
seq2  GGGGTCATAAAGCTCAAGGGAGGAGGAACG-CCCTGCTCCAGAAGGAG-A  236

seq1  TCCACTGCTGCTCTGGGTTCATGTCCTGCCTAAGCTCCCTGCCCAGTGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGCTGCTCTGGGTTCATGTCCTGCCTAAGCTCCCTGCCCAGTGAG  286

seq1  TGTCCATCTACACTAAGGTGGCCTTTTCCCCACCAACTCACATGCCAGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCTACACTAAGGTGGCCTTTTCCCCACCAACTCACATGCCAGCC  336

seq1  TCTAGAACAGCCAACATTCCCACTAATACTTTCCCTCCAGTGTTCTAGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAACAGCCAACATTCCCACTAATACTTTCCCTCCAGTGTTCTAGGT  386

seq1  ATCCCTTAACCTAGGCAAATAGACACCTAACCCTAACCACCACACTGCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTAACCTAGGCAAATAGACACCTAACCCTAACCACCACACTGCAG  436

seq1  AATATGCCTGTGTTCACTCCAAGAAGAAAGACTGTAACCTGCCGTGAGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCCTGTGTTCACTCCAAGAAGAAAGACTGTAACCTGCCGTGAGGC  486

seq1  TTCGCCGCCACTGTTCTCACTAGGCAGGTCTACAGTAAAACTTGAAAACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCGCCACTGTTCTCACTAGGCAGGTCTACAGTAAAACTTGAAAACT  536

seq1  GCCCATCAAAATCAAGGTACCGACTTACTGTGACCCCTGATGATACAGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCAAAATCAAGGTACCGACTTACTGTGACCCCTGATGATACAGCC  586

seq1  TGCTAGATAGACTCACATTTGTCTTGCTAGATAGAAAAGCTCAATATGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGATAGACTCACATTTGTCTTGCTAGATAGAAAAGCTCAATATGAA  636

seq1  GCTACAGTTCAACATAGACGACTGTTAGGACTTTAGTACCTGAAGGCCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTTCAACATAGACGACTGTTAGGACTTTAGTACCTGAAGGCCAC  686

seq1  ACTGCTACTCAGTGGGGGCAGGAATGACTTCTCCAAACTCTTAAACAACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTACTCAGTGGGGGCAGGAATGACTTCTCCAAACTCTTAAACAACT  736

seq1  AGCTATGGAAACAAACAGAATAGAAGTGGTTCTGTACACCAATGGCTTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGGAAACAAACAGAATAGAAGTGGTTCTGTACACCAATGGCTTGT  786

seq1  GCTGTAAGATCAAGAATCGACAAATGGGACCTCATAAAATTGCAAAGCGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAGATCAAGAATCGACAAATGGGACCTCATAAAATTGCAAAGCGT  836

seq1  CTGTAAGGCAAAGGACACTGTCAATAAGACAAAAAGGCCACCAACTGACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGGCAAAGGACACTGTCAATAAGACAAAAAGGCCACCAACTGACT  886

seq1  AAGACCTTTATCAATCCTAAATCCGATAGGGGGCTAATATCCAATATATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTTTATCAATCCTAAATCCGATAGGGGGCTAATATCCAATATATA  936

seq1  CAAAGAACTCAAGTAGTTGAATTC  971
      ||||||||||||||||||||||||
seq2  CAAAGAACTCAAGTAGTTGAATTC  960