BAC Information

Click to search

BAC

Clone NameB6Ng01-129O11
Chromosome3 (Build37)
Map Location 96,927,369 - 97,047,102
singlet/doubletdoublet
Overlap geneAcp6, Bcl9
Upstream geneOtud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5
Downstream geneOlfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129O11.bB6Ng01-129O11.g
ACCDH931368DH931369
length999882
definitionDH931368|Mus musculus domesticus DNA, BAC clone: B6Ng01-129O11, 5' end.DH931369|Mus musculus domesticus DNA, BAC clone: B6Ng01-129O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,927,369 - 96,928,373)(97,046,243 - 97,047,102)
sequence
gaattcaaattttagattcaaatgaagttttaattcgtactcgatgggta
attcatggcatataggtatttcttataaacacggtgacagatgaaggaag
ccagattcagaaggtcacacattataatttggtttatccgaaatgtgaat
tggcaaatccacagacacagaaggtaggttactaaatgccaagggctcca
gggaggaagagggacgagaagtggctgtggatgagtttgggtttctttgg
gggataatggctatgttatggaattggataatggagactgcaaagttttt
tgctactatacaaaaataccaatgaatctttcatataggtgggttgattt
tatagtacgtgaataaataaaacaaaactctttagttagctccaactctg
tgaagactcccacagcttcttggttaaaatcaacctttccttctatgtac
aaacttcagagcacactttaatgtgaatagataactttttataatgctcc
agtctcctctggtaattatgagatctctagggaaggacgatgttatgtct
gtcctagtatcctcaaatggacacatgaaactcatttcctacatattcag
tagatagatcaagtgaagggattattcacatcccaagccttcgtaaacca
taatattgagcaacatatattaaatatagcaaatgttctgaatattctgt
atgtaagactttggtgatgtaaaagcagaaagggtagtctctagctccaa
aagagtatttccacacaatagttacagcacttccatgcttacaatacaca
gctgtgacatccacagctaatagtttagggatgtaaaaattaccactgag
ggcgatgacaggaaaaatctgcaagggtaccaaggagaagtgagcctatg
gttgttaggggcgtggctgaagtgcattccaaaccaacaggaagccctac
cgctttgacagtgtaggggactggaaggttcatagcgggctgagtccct
gaattcacccttttattaccacgctagatccttcatcctggtcccaggaa
gctctaagtcactcccttgtgtgcttcctggactgctatgtcccagtaga
aaagccaacaacagcaactaacttgtatttatctgtttatcctcacccct
caatgtggaaggcacaggccctagcacaggcctggctgaatccagactca
gcccttctagaacacacggaaatgcctgccttgtctcctcagccatctct
ccccctcgcccgagttgactttgttctttgtaagtctgggaaagcgggtt
tttctgctctgtctcttttgaacctcttttatttcccctgctagactgca
aacatccttgaggggaggaacagaggaggatcgatgggcccttgtcccca
agcctggatccttccccatgaccgcaggtcaataaacgcttgtttaattg
aattgtaggatgctgcgctcagctagctgctaaacaaccccatttaaggg
gttaactaataacactcagagaagttcttctccttcgggggcatttgcat
tttaatgggaatcttaaaaacccaaagggaatgttctctaatggtgggat
ctcaggagttgggaaaggcttttttttttttttttttttttttttttggt
aggggttcaagatggggaaccggaaaagtttcctctaccctagggtcatt
gaagggctttgtgtaatgggaccccagtcttgtgaaacatatgaacagaa
aaaatttaaggtacataaaattaaatacttgctattaaaaactagttata
gtggaaatacaatgttctaaataaacaaaccaatttgccatatattaata
tttatgcttctttatttaggcttagcaaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96927369_96928373
seq2: B6Ng01-129O11.b_51_1049

seq1  GAATTCAAATTTTAGATTCAAATGAAGTTTTAATTCGTACTCGATGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTTTAGATTCAAATGAAGTTTTAATTCGTACTCGATGGGTA  50

seq1  ATTCATGGCATATAGGTATTTCTTATAAACACGGTGACAGATGAAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGGCATATAGGTATTTCTTATAAACACGGTGACAGATGAAGGAAG  100

seq1  CCAGATTCAGAAGGTCACACATTATAATTTGGTTTATCCGAAATGTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTCAGAAGGTCACACATTATAATTTGGTTTATCCGAAATGTGAAT  150

seq1  TGGCAAATCCACAGACACAGAAGGTAGGTTACTAAATGCCAAGGGCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATCCACAGACACAGAAGGTAGGTTACTAAATGCCAAGGGCTCCA  200

seq1  GGGAGGAAGAGGGACGAGAAGTGGCTGTGGATGAGTTTGGGTTTCTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAGAGGGACGAGAAGTGGCTGTGGATGAGTTTGGGTTTCTTTGG  250

seq1  GGGATAATGGCTATGTTATGGAATTGGATAATGGAGACTGCAAAGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAATGGCTATGTTATGGAATTGGATAATGGAGACTGCAAAGTTTTT  300

seq1  TGCTACTATACAAAAATACCAATGAATCTTTCATATAGGTGGGTTGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTATACAAAAATACCAATGAATCTTTCATATAGGTGGGTTGATTT  350

seq1  TATAGTACGTGAATAAATAAAACAAAACTCTTTAGTTAGCTCCAACTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTACGTGAATAAATAAAACAAAACTCTTTAGTTAGCTCCAACTCTG  400

seq1  TGAAGACTCCCACAGCTTCTTGGTTAAAATCAACCTTTCCTTCTATGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTCCCACAGCTTCTTGGTTAAAATCAACCTTTCCTTCTATGTAC  450

seq1  AAACTTCAGAGCACACTTTAATGTGAATAGATAACTTTTTATAATGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAGAGCACACTTTAATGTGAATAGATAACTTTTTATAATGCTCC  500

seq1  AGTCTCCTCTGGTAATTATGAGATCTCTAGGGAAGGACGATGTTATGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCTCTGGTAATTATGAGATCTCTAGGGAAGGACGATGTTATGTCT  550

seq1  GTCCTAGTATCCTCAAATGGACACATGAAACTCATTTCCTACATATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGTATCCTCAAATGGACACATGAAACTCATTTCCTACATATTCAG  600

seq1  TAGATAGATCAAGTGAAGGGATTATTCACATCCCAAGCCTTCGTAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATCAAGTGAAGGGATTATTCACATCCCAAGCCTTCGTAAACCA  650

seq1  TAATATTGAGCAACATATATTAAATATAGCAAATGTTCTGAATATTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGAGCAACATATATTAAATATAGCAAATGTTCTGAATATTCTGT  700

seq1  ATGTAAGACTTTGGTGATGTAAAAGCAGAAAAGGTAGTCTCTAGCTCCAA  750
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGTAAGACTTTGGTGATGTAAAAGCAGAAAGGGTAGTCTCTAGCTCCAA  750

seq1  AGGAGTATTTCCACACAATAGTTACAGCACTTCCATGCTTACAATACACA  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATTTCCACACAATAGTTACAGCACTTCCATGCTTACAATACACA  800

seq1  GCTGTGACATCCACAGCTAATAGTTTAGGGATGTAAAAATTACCACCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTGTGACATCCACAGCTAATAGTTTAGGGATGTAAAAATTACCA-CTGA  849

seq1  GGGCGATGACAGGAAAAATCTGCACAGGCAGCAAGGCAGAAGTGAGCCCT  900
      ||||||||||||||||||||||||  || | ||||| ||||||||| |||
seq2  GGGCGATGACAGGAAAAATCTGCAAGGGTACCAAGG-AGAAGTGAG-CCT  897

seq1  ATGGTTGTTAGGGGCGTGGCTGAGGTGCATTCCACAGCCAACAGGAAGCC  950
      ||||||||||||||||||||||| |||||||||| | |||||||||||||
seq2  ATGGTTGTTAGGGGCGTGGCTGAAGTGCATTCCA-AACCAACAGGAAGCC  946

seq1  CTACTGCTTTGCACAGTGCAGGGGACCGGAAGGTCTCAGAGCGAGCTGAG  1000
      |||| |||||| |||||| ||||||| ||||||| ||| |||| ||||||
seq2  CTACCGCTTTG-ACAGTGTAGGGGACTGGAAGGT-TCATAGCGGGCTGAG  994

seq1  TCCCT  1005
      |||||
seq2  TCCCT  999

seq1: chr3_97046243_97047102
seq2: B6Ng01-129O11.g_71_932 (reverse)

seq1  AAGAAGCATAAATATTAATATATTGCAAATTTGGTTTGTTTATTTAGACC  50
      ||||||||||||||||||||||| ||||| |||||||||||||||||| |
seq2  AAGAAGCATAAATATTAATATATGGCAAA-TTGGTTTGTTTATTTAGAAC  49

seq1  ATTGTATTT-CACTATAACTAGTTTTTAATAGCATGTATTTAATTTTATG  99
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  ATTGTATTTCCACTATAACTAGTTTTTAATAGCAAGTATTTAATTTTATG  99

seq1  TA-CTTAAAATCTTTCTGTTCATATGTTTCACAAGACTGGGGTCCCATTA  148
      || |||||| | ||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAAATTTTTTCTGTTCATATGTTTCACAAGACTGGGGTCCCATTA  149

seq1  CACAAAAGCCCTCAATGACCCTAGGGTAGAGG-AACCTTTCCGG-TCCCC  196
      ||||||  || ||||||||||||||||||||| ||| ||||||| |||||
seq2  CACAAAGCCCTTCAATGACCCTAGGGTAGAGGAAACTTTTCCGGTTCCCC  199

seq1  ATCTTGAACCACTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCTT  246
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  ATCTTGAACCCCTACC-AAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCTT  248

seq1  TCCCAACTCCTGAGATCCCACCATTAGAGAACATTCCCTTTGGGTTTTTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTCCTGAGATCCCACCATTAGAGAACATTCCCTTTGGGTTTTTA  298

seq1  AGATTCCCATTAAAATGCAAATGCCCCCGAAGGAGAAGAACTTCTCTGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCCATTAAAATGCAAATGCCCCCGAAGGAGAAGAACTTCTCTGAG  348

seq1  TGTTATTAGTTAACCCCTTAAATGGGGTTGTTTAGCAGCTAGCTGAGCGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTAGTTAACCCCTTAAATGGGGTTGTTTAGCAGCTAGCTGAGCGC  398

seq1  AGCATCCTACAATTCAATTAAACAAGCGTTTATTGACCTGCGGTCATGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTACAATTCAATTAAACAAGCGTTTATTGACCTGCGGTCATGGG  448

seq1  GAAGGATCCAGGCTTGGGGACAAGGGCCCATCGATCCTCCTCTGTTCCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATCCAGGCTTGGGGACAAGGGCCCATCGATCCTCCTCTGTTCCTC  498

seq1  CCCTCAAGGATGTTTGCAGTCTAGCAGGGGAAATAAAAGAGGTTCAAAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAGGATGTTTGCAGTCTAGCAGGGGAAATAAAAGAGGTTCAAAAG  548

seq1  AGACAGAGCAGAAAAACCCGCTTTCCCAGACTTACAAAGAACAAAGTCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGCAGAAAAACCCGCTTTCCCAGACTTACAAAGAACAAAGTCAA  598

seq1  CTCGGGCGAGGGGGAGAGATGGCTGAGGAGACAAGGCAGGCATTTCCGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGCGAGGGGGAGAGATGGCTGAGGAGACAAGGCAGGCATTTCCGTG  648

seq1  TGTTCTAGAAGGGCTGAGTCTGGATTCAGCCAGGCCTGTGCTAGGGCCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGAAGGGCTGAGTCTGGATTCAGCCAGGCCTGTGCTAGGGCCTG  698

seq1  TGCCTTCCACATTGAGGGGTGAGGATAAACAGATAAATACAAGTTAGTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCACATTGAGGGGTGAGGATAAACAGATAAATACAAGTTAGTTG  748

seq1  CTGTTGTTGGCTTTTCTACTGGGACATAGCAGTCCAGGAAGCACACAAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTTGGCTTTTCTACTGGGACATAGCAGTCCAGGAAGCACACAAGG  798

seq1  GAGTGACTTAGAGCTTCCTGGGACCAGGATGAAGGATCTAGCGTGGTAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACTTAGAGCTTCCTGGGACCAGGATGAAGGATCTAGCGTGGTAAT  848

seq1  AAAAGGGTGAATTC  860
      ||||||||||||||
seq2  AAAAGGGTGAATTC  862