BAC Information

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BAC

Clone NameB6Ng01-130A12
Chromosome3 (Build37)
Map Location 82,975,334 - 83,077,926
singlet/doubletdoublet
Overlap geneDchs2
Upstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
Downstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130A12.bB6Ng01-130A12.g
ACCDH931449DH931450
length1,127830
definitionDH931449|Mus musculus domesticus DNA, BAC clone: B6Ng01-130A12, 5' end.DH931450|Mus musculus domesticus DNA, BAC clone: B6Ng01-130A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,076,787 - 83,077,926)(82,975,334 - 82,976,172)
sequence
gaattcacatcttttaccacaaggtggcgctcaaaacaaatgcctctgaa
ggcattacccgcttcctgtaaatctacttcacaaaccttgaagtgaaatt
cctttcccgggagacactgagggaaaaaaggccagttgtcattgatgtca
gtaattgtgacataaaccagcatggtggcattccgtggtggggagccgtg
gtctgtcactaggacagttatttgatgatgcccctgatgttcacgatcca
gtgccaaccaattgatcagctcacctgggaagacagcagaaggagatcga
tcggcactgtgagctagaatgccggcgtgagggtgaccaactgcatccaa
aataatccatgggaaaagaaatcaagtcaaaagctttgacccgcaagacc
attcacgtacaaagcaatcttgcgctgtctgactgctgaaagaattttgc
tgccagctctggtggtgtgtgcctaaactcccagtagcaggaggagcaaa
gggagtcggatcatgactttgaagccattctgggctaactgacgagactc
tgcctcaaaacaaaacaatcactgaggttgctctgaaaaatatcacttga
aaaattctttctatttcaaattacccaccattaatgatttatatgctcac
ccccgtcccggaaatgaaacctatgatttggaagattcataatggttgtg
tttgctgctgcatagaacacagaaagcacatagcctgtggcatcctaagt
tctggatttggtatccaggtctccacctgccagtctcctccagctaactt
ctaggttgctctcaaagcaaacacaaatgaatattttacagtgctttgta
agctgtagattatttgcctttgatatcattactatataataacctgaaaa
acatatttcttgagcaggaagatgtcctttacatataccagctttgcttt
taactcacaaaacatgtgtatagcagagcagcgacttcctaatgactttc
ctgtcagacttttcaaagcgtattttgtattctttgctagaacgtggcta
cttttaaattccccttacacttcagcatggagtcagttataactgtgact
gctgttccagtgccagggtctgcaaga
gaattcaagaagttaatcaccaaaaacaccaaacaatccaatcaaaaaat
gggatatagaactaaaccgagaattcacaactgaagaatcttgaatggtt
gagaagcacctaaagaaatgttcaaagtccttagtgatcagagaaatgca
aatcaaaacgcccctgagattccaccttacaccaatcagaatggctaaga
tcaaaaccttaggtgataacacctgttggaaaggatgtagagacagagga
acactcctccattgctggtgggattgcaaactggtacaaccactctggaa
atcaatctggaggttcctcagaaaattggaaatacatctacctgaagacc
cagctataccatccttgggaatatatactgtgtttcttcttatgaaacaa
agctggtgacgtctgaagaacttagaaggcaggagttttgtcatgtgcat
atatgcttttctttacggattttagacaaggtttcactctcaggggagga
gctgctttctaaattgccacatacctcatttcctcttgttaggataacta
aattgcttcagagaaagaacaatccccacaaatcagaattggcttttatt
cttttatatggttgacaatgatttcttttaacctgtgatgagactcaaac
actgtatgttaagtactcaacaaacccatcagtttgaatattcagtattg
ttttgtggtcaaatcactgaactgtggaaatttttcctccagctcttcgt
tctttcccatctcccttctatcagagccacatcttttctctttctcctta
gaaacaaacagcatctagagataagatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83076787_83077926
seq2: B6Ng01-130A12.b_46_1172 (reverse)

seq1  TCTTGCAGACCCTTGGCAACTGGGGACAGGCAGTCACAAGTTTATACTGA  50
      |||||||||||| |||| ||| || ||| |||||||| ||||   |||||
seq2  TCTTGCAGACCC-TGGC-ACT-GGAACA-GCAGTCAC-AGTTATAACTGA  45

seq1  CTCCCCATGCTGAAGTGTAAGGGGAATTTAAAAGGTAG-CACGTTTCTAA  99
      ||  ||||||||||||||||||||||||||||| |||| |||| |||| |
seq2  CT--CCATGCTGAAGTGTAAGGGGAATTTAAAA-GTAGCCACG-TTCT-A  90

seq1  GCAAGGATTACAAAATACGCTTTGAAAAGTCCTGACAGGGAAGTCATTTG  149
      |||| || |||||||||||||||||||||| |||||||| |||||| || 
seq2  GCAAAGAATACAAAATACGCTTTGAAAAGT-CTGACAGGAAAGTCA-TTA  138

seq1  GGAAGTCGCTGCCTCTTGCTATACACATGTTTTGTGAGTTAAAAGCAAAG  199
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  GGAAGTCGCTG-CTC-TGCTATACACATGTTTTGTGAGTTAAAAGCAAAG  186

seq1  CTGGTATATGTAAAGGACATCTTCCTGCTCAGGAAATATGTTTTTCAGGT  249
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGGTATATGTAAAGGACATCTTCCTGCTCAAGAAATATGTTTTTCAGGT  236

seq1  TATTATATAGTAATGATATCAAAGGCAAATAATCTACAGCTTACAAAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATAGTAATGATATCAAAGGCAAATAATCTACAGCTTACAAAGCA  286

seq1  CTGTAAAATATTCATTTGTGTTTGCTTTGAGAGCAACCTAGAAGTTAGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAATATTCATTTGTGTTTGCTTTGAGAGCAACCTAGAAGTTAGCT  336

seq1  GGAGGAGACTGGCAGGTGGAGACCTGGATACCAAATCCAGAACTTAGGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGACTGGCAGGTGGAGACCTGGATACCAAATCCAGAACTTAGGAT  386

seq1  GCCACAGGCTATGTGCTTTCTGTGTTCTATGCAGCAGCAAACACAACCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGGCTATGTGCTTTCTGTGTTCTATGCAGCAGCAAACACAACCAT  436

seq1  TATGAATCTTCCAAATCATAGGTTTCATTTCCGGGACGGGGGTGAGCATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATCTTCCAAATCATAGGTTTCATTTCCGGGACGGGGGTGAGCATA  486

seq1  TAAATCATTAATGGTGGGTAATTTGAAATAGAAAGAATTTTTCAAGTGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCATTAATGGTGGGTAATTTGAAATAGAAAGAATTTTTCAAGTGAT  536

seq1  ATTTTTCAGAGCAACCTCAGTGATTGTTTTGTTTTGAGGCAGAGTCTCGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAGAGCAACCTCAGTGATTGTTTTGTTTTGAGGCAGAGTCTCGT  586

seq1  CAGTTAGCCCAGAATGGCTTCAAAGTCATGATCCGACTCCCTTTGCTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGCCCAGAATGGCTTCAAAGTCATGATCCGACTCCCTTTGCTCCT  636

seq1  CCTGCTACTGGGAGTTTAGGCACACACCACCAGAGCTGGCAGCAAAATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTACTGGGAGTTTAGGCACACACCACCAGAGCTGGCAGCAAAATTC  686

seq1  TTTCAGCAGTCAGACAGCGCAAGATTGCTTTGTACGTGAATGGTCTTGCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAGTCAGACAGCGCAAGATTGCTTTGTACGTGAATGGTCTTGCG  736

seq1  GGTCAAAGCTTTTGACTTGATTTCTTTTCCCATGGATTATTTTGGATGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAGCTTTTGACTTGATTTCTTTTCCCATGGATTATTTTGGATGCA  786

seq1  GTTGGTCACCCTCACGCCGGCATTCTAGCTCACAGTGCCGATCGATCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCACCCTCACGCCGGCATTCTAGCTCACAGTGCCGATCGATCTCC  836

seq1  TTCTGCTGTCTTCCCAGGTGAGCTGATCAATTGGTTGGCACTGGATCGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGTCTTCCCAGGTGAGCTGATCAATTGGTTGGCACTGGATCGTG  886

seq1  AACATCAGGGGCATCATCAAATAACTGTCCTAGTGACAGACCACGGCTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGGGGCATCATCAAATAACTGTCCTAGTGACAGACCACGGCTCC  936

seq1  CCACCACGGAATGCCACCATGCTGGTTTATGTCACAATTACTGACATCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACGGAATGCCACCATGCTGGTTTATGTCACAATTACTGACATCAA  986

seq1  TGACAACTGGCCTTTTTTCCCTCAGTGTCTCCCGGGAAAGGAATTTCACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTGGCCTTTTTTCCCTCAGTGTCTCCCGGGAAAGGAATTTCACT  1036

seq1  TCAAGGTTTGTGAAGTAGATTTACAGGAAGCGGGTAATGCCTTCAGAGGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTTGTGAAGTAGATTTACAGGAAGCGGGTAATGCCTTCAGAGGC  1086

seq1  ATTTGTTTTGAGCGCCACCTTGTGGTAAAAGATGTGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTGAGCGCCACCTTGTGGTAAAAGATGTGAATTC  1127

seq1: chr3_82975334_82976172
seq2: B6Ng01-130A12.g_69_898

seq1  GAATTCAAGAAGTTAATCACCAAAAACACCAAACAATCCAATCAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAGTTAATCACCAAAAACACCAAACAATCCAATCAAAAAAT  50

seq1  GGGATATAGAACTAAACCGAGAATTCACAACTGAAGAATCTTGAATGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATAGAACTAAACCGAGAATTCACAACTGAAGAATCTTGAATGGTT  100

seq1  GAGAAGCACCTAAAGAAATGTTCAAAGTCCTTAGTGATCAGAGAAATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCACCTAAAGAAATGTTCAAAGTCCTTAGTGATCAGAGAAATGCA  150

seq1  AATCAAAACGCCCCTGAGATTCCACCTTACACCAATCAGAATGGCTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAACGCCCCTGAGATTCCACCTTACACCAATCAGAATGGCTAAGA  200

seq1  TCAAAACCTTAGGTGATAACACCTGTTGGAAAGGATGTAGAGACAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCTTAGGTGATAACACCTGTTGGAAAGGATGTAGAGACAGAGGA  250

seq1  ACACTCCTCCATTGCTGGTGGGATTGCAAACTGGTACAACCACTCTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTCCATTGCTGGTGGGATTGCAAACTGGTACAACCACTCTGGAA  300

seq1  ATCAATCTGGAGGTTCCTCAGAAAATTGGAAATACATCTACCTGAAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCTGGAGGTTCCTCAGAAAATTGGAAATACATCTACCTGAAGACC  350

seq1  CAGCTATACCATCCTTGGGAATATATACTGTGTTTCTTCTTATGAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATACCATCCTTGGGAATATATACTGTGTTTCTTCTTATGAAACAA  400

seq1  AGCTGGTGACGTCTGAAGAACTTAGAAGGCAGGAGTTTTGTCATGTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTGACGTCTGAAGAACTTAGAAGGCAGGAGTTTTGTCATGTGCAT  450

seq1  ATATGCTTTTCTTTACGGATTTTAGACAAGGTTTCACTCTCAGGGGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTTTCTTTACGGATTTTAGACAAGGTTTCACTCTCAGGGGAGGA  500

seq1  GCTGCTTTCTAAATTGCCACATACCTCATTTCCTCTTGTTAGGATAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTCTAAATTGCCACATACCTCATTTCCTCTTGTTAGGATAACTA  550

seq1  AATTGCTTCAGAGAAAGAACAATCCCCACAAATCAGAATTGGCTTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTCAGAGAAAGAACAATCCCCACAAATCAGAATTGGCTTTTATT  600

seq1  CTTTTATATGGTTGACAATGATTTCTTTTAACCTGTGATGAGACTCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATATGGTTGACAATGATTTCTTTTAACCTGTGATGAGACTCAAAC  650

seq1  ACTGTATGTTAAGTACTCAACAAACCCATCAGTTTGAATATTCAGTATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATGTTAAGTACTCAACAAACCCATCAGTTTGAATATTCAGTATTG  700

seq1  TTTTGTGGTCAAATCACTGAACTGT-GAAATTTTTCCTCCAGCTCCTTCC  749
      ||||||||||||||||||||||||| |||||||||||||||||| |||| 
seq2  TTTTGTGGTCAAATCACTGAACTGTGGAAATTTTTCCTCCAGCT-CTTC-  748

seq1  GGTTCTTTCCCATCTCCCTTCCTATCCAGAGCCACATCTTTTCTCTTTCT  799
       ||||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  -GTTCTTTCCCATCTCCCTT-CTAT-CAGAGCCACATCTTTTCTCTTTCT  795

seq1  CCTTAGAAACAAACAGGCATCTAAGGAAGAATAAGATGAA  839
      ||||||||||||||| |||||||  |    ||||||||||
seq2  CCTTAGAAACAAACA-GCATCTAGAG----ATAAGATGAA  830