BAC Information

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BAC

Clone NameB6Ng01-130C13
Chromosome3 (Build37)
Map Location 78,213,513 - 78,214,766
singlet/doubletsinglet
Overlap genenone
Upstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
Downstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130C13.bB6Ng01-130C13.g
ACCDH931545DH931546
length1,2851,222
definitionDH931545|Mus musculus domesticus DNA, BAC clone: B6Ng01-130C13, 5' end.DH931546|Mus musculus domesticus DNA, BAC clone: B6Ng01-130C13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaaacctgataaacaggttcaatgaagtatctggatataaaat
taactcaaacaagccaatggcctttctctacataaaggataaacaggctg
agaaagaaattagggaaacaacacccttctcaatagtcacaaataatata
aaataccttggcatgactctaactacggaagtgaaaaatctgtatgataa
gaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatgga
aagatctctcatgctcatggattggcaggatcaatatagtaaaaatgcct
atcttgccaatagtaatctacagattcaatgcaatccccatcaaaattcc
aactcaattcttcaacgaattagaaagggcaatcttcaaatttttctgga
ataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacc
tctggggaaatcaccatgcctgacctaaagctgtactacagagcaattgt
gataaaaactgcatggtactggtatagcaacagacaagtagaccaatgga
atagaattgaagacccagcaatgaacccacacacctatggtcacttgatc
ttagacaagggagctaaaaccatccagtggaaaaaagacagcattttcaa
caaatggtgctggtacaactggaggttatcatgtagaggaatgcaaattg
atttattcctgtctccttgtactaaggtcaaatctaagtggatcaaagaa
cttcacataaaaccagagacagtgaaacttatagaggagaaagtggggga
aatcctcgaagatatgggcacaggggaaaattcctgaatagaattgcaat
ggcttgtgctgtattatcaagattcgacaaatgggacctcataaattgca
aagcttttgtaaggcaaagacaccgtaaataaaacaaaaggcacaacaga
ttgggaaaggatcttactatctaatcagatattattagtccctaatcaga
tagggactaatatccaaaataataagaactcagaagtggacttcggaaaa
tcaatacccattaaaacatgggctcaagctaacaagattctcactgagga
tatccaatggctgaaagacctgaaaatgttcagcatccttaatcatcagg
gaatgcaaatcaaacacaattggaatccactccaccgttcaatgctagat
aaaggtaaggaacacgagctgcgaagtggtaagaaaacctctattgtggg
gattgagcctaacaccccttaaacatcggggggtc
gaattccccaacacattcattttaaatatcctcatatataattattttcc
tggcagtatagaaagcacaaattccttagtttctattttagttacacagg
gtttagaaaacattaatgccatgtagaaatagaatctataatcttctttt
atatcttgcagttcatgtgtacaacatttctctattttcttcattcagcg
tacattcttacctctgttcctcttgtatgaaaacctggcaagaggatggc
actgtggcccagcagtcctgggcacagttgagtggagaacaggaccggaa
tcagaggggctttatctcacaggtagctatttgtccgtacttgagaaaat
ataaaattgtagatttaaatctcttggaaaatagttgtagataagatttt
taaaatatgtttttttctgaattgcaacttgtatttctcaccttctatca
cctcaaatttgctcatttagaccccaagtgcttgtatataccttaacagt
tccttggtaagcaatagattatctatgtaaaaactgcaaactaaaaatac
tttgagttataaacttggcaatttcatattctgtatgcatccattcttcc
tgaaaaaaaattcatctctatgatatttaccaaaaagttatgcttaaaag
aagaacaatttatatctcatcctatgatcttactagaatattttgattac
atattttgtagttaagaagcaccaacttatgaattattcaatctaggttc
ttatgtatttcatctgtatattgatattctgaaatatcacaatgaaattt
agattttgtctcattccctggtttatacacaacctcaagactgaaaaaga
catactcggggcattttgattaaaatatccgaacacgtcaaaggggaaaa
tacacccatgaaaagttcagcagcttacttcaaatttgatcagttcgagt
aagcagcatgaggcaggtttaggagctggagcagctgggctcacagttag
acagtgggagcataatattgggaaactaggcctgtttgtaaattctctac
ctgagcactgaagatgatgggattaattctagccttgttacttgttgaat
tgggccgaactttttttagctgcatgaccgatgtactaaagcctaatcct
caggtggatcctaaaatgtacgtatgtctcccaacttgaatgtttccagc
ccgtctctggggccgaatactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78213513_78214766
seq2: B6Ng01-130C13.g_69_1290 (reverse)

seq1  GAGTATTCGGCCCCAG---CAGCCTCGAAAACAGTTCAAAAGTAGGGAGA  47
      ||||||||||||||||   | | || | ||||| |||  |||| ||||||
seq2  GAGTATTCGGCCCCAGAGACGGGCT-GGAAACA-TTC--AAGTTGGGAGA  46

seq1  CATAAGTGACCTATTTTTTAGTAAATCAACTTGAAAGAATTTTAGGCACT  97
      |||     || ||  ||||||   ||| || ||  || |  ||||||  |
seq2  CAT-----ACGTACATTTTAG--GATCCACCTG--AGGA--TTAGGCTTT  85

seq1  ATATGTACATTTCTGTTCTTTTCTTTTTCTTAAAAAAAAAGTTCTGGCAC  147
      |   |||||  || |        |  | |    ||||||||||| ||| |
seq2  A---GTACA--TCGG--------TCATGCAGCTAAAAAAAGTTC-GGCCC  121

seq1  AATTTCCACAAGTAACCAAGGCTAGATTAAAATTCCCCATCATCTTCAGT  197
      || ||| |||||||| |||||||||| | ||    |||||||||||||||
seq2  AA-TTCAACAAGTAA-CAAGGCTAGAATTAA---TCCCATCATCTTCAGT  166

seq1  GCTCAGGTAAGAGAAATATACCAACAGGCCTAGTTTCCCAATTATTATGC  247
      |||||||| |||| ||| ||| ||||||||||||||||||| ||||||||
seq2  GCTCAGGT-AGAG-AATTTACAAACAGGCCTAGTTTCCCAA-TATTATGC  213

seq1  TTCCCACTGTCTAACTGTTGAGCCCAGCTGCTCCAGCTCCTAACCCTGCC  297
       |||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  -TCCCACTGTCTAACTG-TGAGCCCAGCTGCTCCAGCTCCTAAACCTGCC  261

seq1  TCATGCTGCTTACTCGAACTGATCAAATTTGAAGTAAGCTGCTGAACTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGCTTACTCGAACTGATCAAATTTGAAGTAAGCTGCTGAACTTT  311

seq1  TCATGGTTGTATTTTCCCTTTTGACGTGTTC-GATATTTTAATC-AAATG  395
      |||||| ||||||||||| |||||||||||| |||||||||||| |||||
seq2  TCATGGGTGTATTTTCCCCTTTGACGTGTTCGGATATTTTAATCAAAATG  361

seq1  -CCCGAGTATGTCTTTTTCAGTCTTGAGGTTGTGTATAAACCAGGGAATG  444
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAGTATGTCTTTTTCAGTCTTGAGGTTGTGTATAAACCAGGGAATG  411

seq1  AGACAAAATCTAAATTTCATTGTGATATTTCAGAATATCAATATACAGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAATCTAAATTTCATTGTGATATTTCAGAATATCAATATACAGAT  461

seq1  GAAATACATAAGAACCTAGATTGAATAATTCATAAGTTGGTGCTTCTTAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACATAAGAACCTAGATTGAATAATTCATAAGTTGGTGCTTCTTAA  511

seq1  CTACAAAATATGTAATC-AAATATTCTAGTAAGATCATAGGATGAGATAT  593
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTACAAAATATGTAATCAAAATATTCTAGTAAGATCATAGGATGAGATAT  561

seq1  AAATTGTTCTTCTTTTAAGCATAACTTTTTGGTAAATATCATAGAGATGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTCTTCTTTTAAGCATAACTTTTTGGTAAATATCATAGAGATGA  611

seq1  ATTTTTTTTCAGGAAGAATGGATGCATACAGAATATGAAATTGCCAAGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTCAGGAAGAATGGATGCATACAGAATATGAAATTGCCAAGTT  661

seq1  TATAACTCAAAGTATTTTTAGTTTGCAGTTTTTACATAGATAATCTATTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTCAAAGTATTTTTAGTTTGCAGTTTTTACATAGATAATCTATTG  711

seq1  CTTACCAAGGAACTGTTAAGGTATATACAAGCACTTGGGGTCTAAATGAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCAAGGAACTGTTAAGGTATATACAAGCACTTGGGGTCTAAATGAG  761

seq1  CAAATTTGAGGTGATAGAAGGTGAGAAATACAAGTTGCAATTCAGAAAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTGAGGTGATAGAAGGTGAGAAATACAAGTTGCAATTCAGAAAAA  811

seq1  AACATATTTTAAAAATCTTATCTACAACTATTTTCCAAGAGATTTAAATC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTTTAAAAATCTTATCTACAACTATTTTCCAAGAGATTTAAATC  861

seq1  TACAATTTTATATTTTCTCAAGTACGGACAAATAGCTACCTGTGAGATAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTTATATTTTCTCAAGTACGGACAAATAGCTACCTGTGAGATAA  911

seq1  AGCCCCTCTGATTCCGGTCCTGTTCTCCACTCAACTGTGCCCAGGACTGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTCTGATTCCGGTCCTGTTCTCCACTCAACTGTGCCCAGGACTGC  961

seq1  TGGGCCACAGTGCCATCCTCTTGCCAGGTTTTCATACAAGAGGAACAGAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCACAGTGCCATCCTCTTGCCAGGTTTTCATACAAGAGGAACAGAG  1011

seq1  GTAAGAATGTACGCTGAATGAAGAAAATAGAGAAATGTTGTACACATGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATGTACGCTGAATGAAGAAAATAGAGAAATGTTGTACACATGAA  1061

seq1  CTGCAAGATATAAAAGAAGATTATAGATTCTATTTCTACATGGCATTAAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGATATAAAAGAAGATTATAGATTCTATTTCTACATGGCATTAAT  1111

seq1  GTTTTCTAAACCCTGTGTAACTAAAATAGAAACTAAGGAATTTGTGCTTT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAAACCCTGTGTAACTAAAATAGAAACTAAGGAATTTGTGCTTT  1161

seq1  CTATACTGCCAGGAAAATAATTATATATGAGGATATTTAAAATGAATGTG  1243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTGCCAGGAAAATAATTATATATGAGGATATTTAAAATGAATGTG  1211

seq1  TTGGGGAATTC  1254
      |||||||||||
seq2  TTGGGGAATTC  1222