BAC Information

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BAC

Clone NameB6Ng01-130I16
Chromosome3 (Build37)X (Build37)
Map Location 41,059,131 - 41,059,73738,746,529 - 38,747,527
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130I16.bB6Ng01-130I16.g
ACCDH931828DH931829
length997973
definitionDH931828|Mus musculus domesticus DNA, BAC clone: B6Ng01-130I16, 5' end.DH931829|Mus musculus domesticus DNA, BAC clone: B6Ng01-130I16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,131 - 41,059,737)(38,746,529 - 38,747,527)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctctataaatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgttttattgacggtgtcttttgccttgcagaagctttgcaatttta
tgagtacccatttgtctattcttgatcttacagcacaagccattgctgtt
ttattcaggaattttcccctgtacccatctttgaggctttcccctacttt
ctcctctataagtttcagtgtctctggttttatgtggagttccttaatcc
acttagatttgaccttagtgcaaggagataggaatggatcaattcgcatt
cttctatatgataaccaccagttgtgccagcaccatttgttgaaaatgct
gtcttttttccactggatggttttagctcccttgtcgaagatcaagtgac
cataagtatatgggttcatttctgggtcttcaattctattccattggtct
acttgtctgtcactattaccagtaccatgcaatttttatcacaattgctc
tgtagtacagatttaggtcaggcatggtgattccaccagaggttctttta
tccttgagcagagtttttgctatcctaggttttttattattccagatgaa
tttgaagattgccctttctaattcgttgaagaattgagttggaattttga
tggggattgcattgaatctgtagattgcttttggcaagatggccattttt
acaatgttgatcctgccaatccatgagcatgggagatctttcatcttctg
agatcttctttaatttctttcttcagagacttgaagttcttatcatacag
atcttttacttacttagttagagtcacaccaagatattttatattatttg
tgactattgagaaggtgttgtttccctaattctttctcagcctgttt
gaattcagagtctttataggaatgaagaagataactagagacagttgaaa
tttagcctgtggctaattcttaaggaggaatagcaattgctgattttatg
aaattttaatctggtataatctgtgtgctgtgggcatatccttttgaatc
attgtgatatcagtttcatgagcatagtagtagtattttgaagcaaaggg
ggaaaaaaaggcacattcaacacttttcagtgttctgggtgattacacac
aaaattaaaatcagtgattttttttattgaaaatgtctatattatacaac
cacttttgaggcagaggcaggaagattgctacacatttggggttgtcctt
atctacatagtgagttccacgtgctccagaggggcattgtaagaacccat
ctaaagccctacaaaataaacaactaagcatataaacaaattcacaaaca
aacaaacaaacaaaaccatggatgtcctaggtcaagagaatctgttgttt
gttcaaatataagaaaatgtgaatttcggtggagttttgtgcttcactag
aaaatccctgaagattttctctgggctgtgaacttgtttgtttgtaattg
ctatcaggctgatggaataagtgatgctgccgttggttatggagcctaga
ggaaagatgtctacaggcattttgaaggtagagtccatggacagaactaa
aactcttcggaagcacaggacaacaatgagtatgtgacacacaataaagg
acaatccagctccaaacgacaatgtgttacagagaggcttttgtggaaag
tgatatgatatatacacacatagcatcttagaagacatgagtgttgtgct
aagcttctgaaacctgactctatcatagttcttgtcaaacactgtgatgt
gactctgaagtattacttttgagcttcagcgtatttgtctttgagtggaa
catctcatacttcagaaacatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059131_41059737
seq2: B6Ng01-130I16.b_48_653 (reverse)

seq1  TACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGT-ATAGTGACA  49
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  TACTACAGAGCAATTGTGATAAAAATTGCATGGTACTGGTAATAGTGACA  50

seq1  GACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACAC  99
      |||||| ||||||||||||||||||||||||| |||||| ||| ||| | 
seq2  GACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCATAT  100

seq1  ACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAA  149
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAA  150

seq1  AAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCAT  199
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTGGTTATCAT  200

seq1  GTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAA  249
       |||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  ATAGAAGAATGCGAATTGATCCATTCCTATCTCCTTGCACTAAGGTCAAA  250

seq1  TCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTAT  299
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  TCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTAT  300

seq1  AGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAAT  349
      |||||||||||| ||| |||||||  |||  ||||  ||||||| |||||
seq2  AGAGGAGAAAGTAGGGGAAAGCCTCAAAG--ATGGGTACAGGGG-AAAAT  347

seq1  TCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAA  399
      ||||| ||| ||||||||||||||||||||||||||  ||||||||||||
seq2  TCCTGAATAAAACAGCAATGGCTTGTGCTGTAAGATCAAGAATAGACAAA  397

seq1  TGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAA  449
      ||||  ||||| ||| ||||||||||||||||||||||||||||||||||
seq2  TGGGTACTCATAAAATTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAA  447

seq1  TAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTA  498
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTA  497

seq1  AATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTG  548
      |||||||||||||||||||||||||||| |||  ||||||||||||||||
seq2  AATCAGATAGGGGACTAATATCCAATATTTATAGAGAACTCAAGAAGGTG  547

seq1  GATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAA  598
      || ||||||||||||||||||||||||||||||||||||||||| || ||
seq2  GACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAA  597

seq1  CAAAGAATT  607
      |||||||||
seq2  CAAAGAATT  606

seq1: chrX_38746529_38747527
seq2: B6Ng01-130I16.g_66_1038 (reverse)

seq1  TCATGTTTTCTATGGAAAAGTATATGAGATGTATCCCCAACTCACAGACA  50
      ||||| |||||   |||     |||||||||| |||   ||||| |||||
seq2  TCATG-TTTCT---GAA----GTATGAGATGT-TCC---ACTCAAAGACA  38

seq1  AATACGCTGAGGCTCAAAAAGTTAAATTACTTCCAGAGGTCACATTCACA  100
      |||||||||| |||| ||||||   | ||||| |||| |||||| |||||
seq2  AATACGCTGAAGCTC-AAAAGT---AATACTT-CAGA-GTCACA-TCACA  81

seq1  GTTGTTTTGAC-AGAACTATGATTAGAGTCAAGGTTTTCAGAGCCTTAGC  149
      ||   |||||| |||||||||| ||||||||  | |||||||  ||||||
seq2  GT--GTTTGACAAGAACTATGA-TAGAGTCA--GGTTTCAGAAGCTTAGC  126

seq1  ACAACACTCATGTCTCTAAAGATGCTATGTGTGTATATATCATATCACTT  199
      |||||||||||||||   |||||||||||||||||||||||||||||| |
seq2  ACAACACTCATGTCTTCTAAGATGCTATGTGTGTATATATCATATCAC-T  175

seq1  TTCCACAAAAGCCTCTCTTGTAAACACATTGTCGTTTGGAGCTGGATTGT  249
      ||||||||||||||||| ||| ||||||||||||||||||||||||||||
seq2  TTCCACAAAAGCCTCTC-TGT-AACACATTGTCGTTTGGAGCTGGATTGT  223

seq1  CCTTTATTGTGTGTCACATACTCATTGTTGTCCTGTGCTTCCGAAGAGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTGTGTGTCACATACTCATTGTTGTCCTGTGCTTCCGAAGAGTT  273

seq1  TTAGTTCTGTCCATGGACTCTACCTTCAAAATGCCTGTAGACATCTTTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTGTCCATGGACTCTACCTTCAAAATGCCTGTAGACATCTTTCC  323

seq1  TCTAGGCTCCATAACCAACGGCAGCATCACTTATTCCATCAGCCTGATAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTCCATAACCAACGGCAGCATCACTTATTCCATCAGCCTGATAG  373

seq1  CAATTACAAACAAACAAGTTCACAGCCCAGAGAAAATCTTCAGGGATTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACAAACAAACAAGTTCACAGCCCAGAGAAAATCTTCAGGGATTTT  423

seq1  CTAGTGAAGCACAAAACTCCACCGAAATTCACATTTTCTTATATTTGAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAAGCACAAAACTCCACCGAAATTCACATTTTCTTATATTTGAAC  473

seq1  AAACAACAGATTCTCTTGACCTAGGACATCCATGGTTTTGTTTGTTTGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAGATTCTCTTGACCTAGGACATCCATGGTTTTGTTTGTTTGTT  523

seq1  TGTTTGTGAATTTGTTTATATGCTTAGTTGTTTATTTTGTAGGGCTTTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGAATTTGTTTATATGCTTAGTTGTTTATTTTGTAGGGCTTTAG  573

seq1  ATGGGTTCTTACAATGCCCCTCTGGAGCACGTGGAACTCACTATGTAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTCTTACAATGCCCCTCTGGAGCACGTGGAACTCACTATGTAGAT  623

seq1  AAGGACAACCCCAAATGTGTAGCAATCTTCCTGCCTCTGCCTCAAAAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAACCCCAAATGTGTAGCAATCTTCCTGCCTCTGCCTCAAAAGTG  673

seq1  GTTGTATAATATAGACATTTTCAATAAAAAAAATCACTGATTTTAATTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATAATATAGACATTTTCAATAAAAAAAATCACTGATTTTAATTTT  723

seq1  GTGTGTAATCACCCAGAACACTGAAAAGTGTTGAATGTGCCTTTTTTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTAATCACCCAGAACACTGAAAAGTGTTGAATGTGCCTTTTTTTCC  773

seq1  CCCTTTGCTTCAAAATACTACTACTATGCTCATGAAACTGATATCACAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGCTTCAAAATACTACTACTATGCTCATGAAACTGATATCACAAT  823

seq1  GATTCAAAAGGATATGCCCACAGCACACAGATTATACCAGATTAAAATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAAAGGATATGCCCACAGCACACAGATTATACCAGATTAAAATTT  873

seq1  CATAAAATCAGCAATTGCTATTCCTCCTTAAGAATTAGCCACAGGCTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATCAGCAATTGCTATTCCTCCTTAAGAATTAGCCACAGGCTAAA  923

seq1  TTTCAACTGTCTCTAGTTATCTTCTTCATTCCTATAAAGACTCTGAATTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTGTCTCTAGTTATCTTCTTCATTCCTATAAAGACTCTGAATTC  973