BAC Information

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BAC

Clone NameB6Ng01-130O02
Chromosome3 (Build37)
Map Location 63,537,961 - 63,707,400
singlet/doubletdoublet
Overlap genePlch1
Upstream geneLOC676984, LOC666967, Mme
Downstream geneLOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130O02.bB6Ng01-130O02.g
ACCDH932080DH932081
length1,1341,079
definitionDH932080|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O02, 5' end.DH932081|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,706,255 - 63,707,400)(63,537,961 - 63,539,046)
sequence
gaattcttggaccttctgttagataggcagctattgttggattagctgga
ctacagcctgtaagtcattctaataaattcccaattccatagacacagac
agacagacagacagacagacagacagataaatagactcttgagaaccctg
gcactttgctaaagggcttcagatacataggtcttatttagttactcgac
atgaatttctgtccataatgaagatcacagttctgtaaagcatataaatg
cacgaatttacttatttcagaccctccaccccaactcctgtgtcttagga
tgtatggctgtgaacagataccatgaccaaggacaatgtttaactggggc
tggcttacaggttcagaggttcagtccattatcatcaaggcaggaacatg
gaagcatacagggatgcatggtgcaggaggagctgagagttctacatctt
tatctgaaggccgctagaagaagattggctcccatgtggttaggaggcag
gtcttattgcccacccctacagcgacacactttctccaacaaaagcttca
cctactctaacaacctcttaatagtgccactccctgggccaagcatattc
aaaccaccacatcctggatatataaagttgtcaaaatctaacagtttata
ctgagtaactaatacacaggcttcattttgctattttacttttgtgaatg
tgtcaaaactccttccacaaatagtgaaaaaatataagacccaacatttt
cataggtcagctttcttgtttatgtccctttccccccatcttgagttcag
tatggcagttggccacgtatggggaaacatctctcctgattggtgatttg
atgcaagattttattaattgctcttaaattttttaaacaatacagaaatt
cacgccataagaacaagtcctgctcatcatttccgatgtgtcatctgtat
tttcagctaagactgatgacctagctggtcttggcctggcagctcttgag
aaatatgtgttgaaagaactgactcctcctgatatgcccctagcaggttc
tctgattttctggtgcactgataaatagaagtattatttatctcctttag
ctcctgctcctggaatacttgatttattgctggt
gaattcccaggaagttcataggcttgcctcaaacaaggtggaaggcaagc
actcatacttatatctgttctaagacaacaacctgcacccctctccccac
atacaaacatgcacaggcatgcccgtgcaaacacacatgaatgtgttttg
atgttgttttgcttttttgtttgtttgtttgtttgtttgttcaagacagg
gtttctctgtatagccctggttgtcctgggactccctttgtagaccaggc
tggccttgaactcagaaatccgcctgcctctgcctccagagtgctgggat
taaaggcgtgcgccaccacagctgttgttttgcttttttaagaggaaata
cctctgtgggttttccccctcttctatgtttcccaatttatgtttaaaaa
aaaacatcaaaaacatcaacaacaacaacaacaacaaaaaagccaaaaga
aggcagggcccagggcctgataagagcgagctctaaggtaggcttctgac
ttgaaagcaaaaggaatattaataggatattaagttgctcccagaatatg
ctgtagggcagggatggtcagagacaggctctgaggcaaatggctgaggc
tgttgcagtgaacagcctccaaatgtcatctgtctcttctgtctcttacc
tctgtccttctgtggtactctcttcttgagtgtgggctggacctagtgac
cactaataaagataagaacagagcaaaacagtagggagtctgttcttcct
gaacctatcttccttcttatccttccatatccagccatcctcctaacccc
catatctccccctctgtctgtctgtctgtctgtctgtcctccctctccct
ctccctctccccccaccctttctctacacacacgatagatacacacacac
aatatacacacgagtgagctgttcagtgaaaagaaccactagcaaagaac
tagaagtctctagttacccctgccagaaccatgcaatcacttgccaccaa
ctgaccctagaattacgctttctccctccccggttaccctgagtactggt
gtttccactgacccttcatgtaacccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_63706255_63707400
seq2: B6Ng01-130O02.b_45_1178 (reverse)

seq1  ACCAGCAATAATACAGAGTTATATCCAGGAGCAGGAGCCTAAAGGAGATA  50
      |||||||||||  || || ||| |||||||||||||| ||||||||||||
seq2  ACCAGCAATAAATCA-AG-TAT-TCCAGGAGCAGGAG-CTAAAGGAGATA  46

seq1  AATAATACTTCTAATTTAATCAGTGCACCAGAAAATCAGAGAACCTGGCT  100
      |||||||||||||  || |||||||||||||||||||||||||||| |||
seq2  AATAATACTTCTA--TTTATCAGTGCACCAGAAAATCAGAGAACCT-GCT  93

seq1  TAGGGGGCATATCAAGGAGGAGTCAGTTTCTTTTCAACACATATTTCTCA  150
         |||||||||| ||||||||||||||   |||||||||||||||||||
seq2  --AGGGGCATATC-AGGAGGAGTCAGTT--CTTTCAACACATATTTCTCA  138

seq1  AGAGCCTGCCAGGCCAAGACCAGCTAGGTCATCAGTCTTAGCTG-AAATA  199
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGAG-CTGCCAGGCCAAGACCAGCTAGGTCATCAGTCTTAGCTGAAAATA  187

seq1  CAGATGACACATCGGAAATGATGAGCAGGACTTGTTCTTATGGCCTGAAT  249
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGATGACACATCGGAAATGATGAGCAGGACTTGTTCTTATGGCGTGAAT  237

seq1  TTCTGTATTGTTTAAAAAATTTAAGAGCAATTAATAAAATCTTGCATCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATTGTTTAAAAAATTTAAGAGCAATTAATAAAATCTTGCATCAA  287

seq1  ATCACCAATCAGGAGAGATGTTTCCCCATACGTGGCCAACTGCCATACTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAATCAGGAGAGATGTTTCCCCATACGTGGCCAACTGCCATACTG  337

seq1  AACTCAAGATGGGGGGAAAGGGACATAAACAAGAAAGCTGACCTATGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGATGGGGGGAAAGGGACATAAACAAGAAAGCTGACCTATGAAA  387

seq1  ATGTTGGGTCTTATATTTTTTCACTATTTGTGGAAGGAGTTTTGACACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGGTCTTATATTTTTTCACTATTTGTGGAAGGAGTTTTGACACAT  437

seq1  TCACAAAAGTAAAATAGCAAAATGAAGCCTGTGTATTAGTTACTCAGTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAGTAAAATAGCAAAATGAAGCCTGTGTATTAGTTACTCAGTAT  487

seq1  AAACTGTTAGATTTTGACAACTTTATATATCCAGGATGTGGTGGTTTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTAGATTTTGACAACTTTATATATCCAGGATGTGGTGGTTTGAA  537

seq1  TATGCTTGGCCCAGGGAGTGGCACTATTAAGAGGTTGTTAGAGTAGGTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTGGCCCAGGGAGTGGCACTATTAAGAGGTTGTTAGAGTAGGTGA  587

seq1  AGCTTTTGTTGGAGAAAGTGTGTCGCTGTAGGGGTGGGCAATAAGACCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGTTGGAGAAAGTGTGTCGCTGTAGGGGTGGGCAATAAGACCTG  637

seq1  CCTCCTAACCACATGGGAGCCAATCTTCTTCTAGCGGCCTTCAGATAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAACCACATGGGAGCCAATCTTCTTCTAGCGGCCTTCAGATAAAG  687

seq1  ATGTAGAACTCTCAGCTCCTCCTGCACCATGCATCCCTGTATGCTTCCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAACTCTCAGCTCCTCCTGCACCATGCATCCCTGTATGCTTCCAT  737

seq1  GTTCCTGCCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGCCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCC  787

seq1  CCAGTTAAACATTGTCCTTGGTCATGGTATCTGTTCACAGCCATACATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAAACATTGTCCTTGGTCATGGTATCTGTTCACAGCCATACATCC  837

seq1  TAAGACACAGGAGTTGGGGTGGAGGGTCTGAAATAAGTAAATTCGTGCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACAGGAGTTGGGGTGGAGGGTCTGAAATAAGTAAATTCGTGCAT  887

seq1  TTATATGCTTTACAGAACTGTGATCTTCATTATGGACAGAAATTCATGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCTTTACAGAACTGTGATCTTCATTATGGACAGAAATTCATGTC  937

seq1  GAGTAACTAAATAAGACCTATGTATCTGAAGCCCTTTAGCAAAGTGCCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAACTAAATAAGACCTATGTATCTGAAGCCCTTTAGCAAAGTGCCAG  987

seq1  GGTTCTCAAGAGTCTATTTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAAGAGTCTATTTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTC  1037

seq1  TGTGTCTATGGAATTGGGAATTTATTAGAATGACTTACAGGCTGTAGTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTATGGAATTGGGAATTTATTAGAATGACTTACAGGCTGTAGTCC  1087

seq1  AGCTAATCCAACAATAGCTGCCTATCTAACAGAAGGTCCAAGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATCCAACAATAGCTGCCTATCTAACAGAAGGTCCAAGAATTC  1134

seq1: chr3_63537961_63539046
seq2: B6Ng01-130O02.g_69_1147

seq1  GAATTCCCAGGAAGTTCATAGGCTTGCCTCAAACAAGGTGGAAGGCAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGGAAGTTCATAGGCTTGCCTCAAACAAGGTGGAAGGCAAGC  50

seq1  ACTCATACTTATATCTGTTCTAAGACAACAACCTGCACCCCTCTCCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATACTTATATCTGTTCTAAGACAACAACCTGCACCCCTCTCCCCAC  100

seq1  ATACAAACATGCACAGGCATGCCCGTGCAAACACACATGAATGTGTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACATGCACAGGCATGCCCGTGCAAACACACATGAATGTGTTTTG  150

seq1  ATGTTGTTTTGCTTTTTTGTTTGTTTGTTTGTTTGTTTGTTCAAGACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTTTGCTTTTTTGTTTGTTTGTTTGTTTGTTTGTTCAAGACAGG  200

seq1  GTTTCTCTGTATAGCCCTGGTTGTCCTGGGACTCCCTTTGTAGACCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTATAGCCCTGGTTGTCCTGGGACTCCCTTTGTAGACCAGGC  250

seq1  TGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCAGAGTGCTGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCAGAGTGCTGGGAT  300

seq1  TAAAGGCGTGCGCCACCACAGCTGTTGTTTTGCTTTTTTAAGAGGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCGTGCGCCACCACAGCTGTTGTTTTGCTTTTTTAAGAGGAAATA  350

seq1  CCTCTGTGGGTTTTCCCCCTCTTCTATGTTTCCCAATTTATGTTTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGGGTTTTCCCCCTCTTCTATGTTTCCCAATTTATGTTTAAAAA  400

seq1  AAAACATCAAAAACATCAACAACAACAACAACAACAAAAAAGCCAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCAAAAACATCAACAACAACAACAACAACAAAAAAGCCAAAAGA  450

seq1  AGGCAGGGCCCAGGGCCTGATAAGAGCGAGCTCTAAGGTAGGCTTCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGCCCAGGGCCTGATAAGAGCGAGCTCTAAGGTAGGCTTCTGAC  500

seq1  TTGAAAGCAAAAGGAATATTAATAGGATATTAAGTTGCTCCCAGAATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCAAAAGGAATATTAATAGGATATTAAGTTGCTCCCAGAATATG  550

seq1  CTGTAGGGCAGGGATGGTCAGAGACAGGCTCTGAGGCAAATGGCTGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGGCAGGGATGGTCAGAGACAGGCTCTGAGGCAAATGGCTGAGGC  600

seq1  TGTTGCAGTGAACAGCCTCCAAATGTCATCTGTCTCTTCTGTCTCTTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCAGTGAACAGCCTCCAAATGTCATCTGTCTCTTCTGTCTCTTACC  650

seq1  TCTGTCCTTCTGTGGTACTCTCTTCTTGAGTGTGGGCTGGACCTAGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTTCTGTGGTACTCTCTTCTTGAGTGTGGGCTGGACCTAGTGAC  700

seq1  CACTAATAAAGATAAGAACAGAGCAAAACAGTAGGGAGTCTGTTCTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATAAAGATAAGAACAGAGCAAAACAGTAGGGAGTCTGTTCTTCCT  750

seq1  GAACCTATCTTCCTTCTTATCCTTCCATATCCAGCCATCCTCCTAACCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTATCTTCCTTCTTATCCTTCCATATCCAGCCATCCTCCTAACCCC  800

seq1  CATATCTCCCCCTCTGTCTGTCTGTCTGTCTGTCTGTCCTCCCTCTCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTCCCCCTCTGTCTGTCTGTCTGTCTGTCTGTCCTCCCTCTCCCT  850

seq1  CTCCCTCTCCCCCCCCCCTCTCTCTCACACACACACACACACACACACAC  900
      |||||||||||||| |||| ||||| ||||||||  | | | ||||||||
seq2  CTCCCTCTCCCCCCACCCTTTCTCT-ACACACAC-GATAGATACACACAC  898

seq1  ACACACACACACACGAGTGAGCTGTTCAGTGGAAAGAACCACATAGCAAA  950
      ||| | | ||||||||||||||||||||||| |||||||||| |||||||
seq2  ACA-ATATACACACGAGTGAGCTGTTCAGTGAAAAGAACCAC-TAGCAAA  946

seq1  GAACTAGAAGTCTCTAGTTTAACACCTGCAAGAA-CATGCAATCAC-TGC  998
      |||||||||||||||||||  || ||||| |||| ||||||||||| |||
seq2  GAACTAGAAGTCTCTAGTT--ACCCCTGCCAGAACCATGCAATCACTTGC  994

seq1  CACCAACTGACCCTAGAATTACAGCTTTCT-CCTCCCCGTTTACCCTGAG  1047
      |||||||||||||||||||||| ||||||| |||||||| ||||||||| 
seq2  CACCAACTGACCCTAGAATTAC-GCTTTCTCCCTCCCCGGTTACCCTGA-  1042

seq1  GTAACTGTGTTTCCACCTGACACCTTCACTGTAGCCTTT-  1086
      |||   ||||||||| ||||| |||||| |||| || || 
seq2  GTACTGGTGTTTCCA-CTGAC-CCTTCA-TGTAACCCTTT  1079