BAC Information

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BAC

Clone NameB6Ng01-131F19
Chromosome3 (Build37)
Map Location 12,953,815 - 13,071,226
singlet/doubletdoublet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131F19.bB6Ng01-131F19.g
ACCDH932438DH932439
length1,1511,063
definitionDH932438|Mus musculus domesticus DNA, BAC clone: B6Ng01-131F19, 5' end.DH932439|Mus musculus domesticus DNA, BAC clone: B6Ng01-131F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,953,815 - 12,954,980)(13,070,165 - 13,071,226)
sequence
gaattcaaaacagctagtccacactgtattcttagtccatagctgcagcg
aggtaacattcattttagttttccatactatttatagattgtagaaagta
attgtatgtaattatggagtacaacacgattcttcaattgcttcattttg
tgcttagtatgtggaatgattaaattaggctaagtaacaattacagtgaa
agacagagagagagataaagagagagagagagagagagagagagagagag
agagagagagagagagagagagagagattgtatctatttgggatatgcca
aatcttttggtagaaaaaaaactgtaaagaatagaatgtacaatgatata
cagtgtttcagttagtcaagtatatttttatataatttttggttattctg
atgtttgttgtgcaaccatagtaatatgatatctatacaataatagttct
atttagaatttaccactacttatgtagcatttgttgtgtaatgtcacttt
gaaggtgtgagagttttcccactaagtgatgtcattctttgtatccattc
tcttgagtggcaatcagctactaaggttttcttagagaccaaaatttatt
gcactttattgtattttttgaaagaatacctgtaagaagaaacacacaag
aagatttgctatgtagaacaaataaactctaacaaagaccgggaagagag
aacatcatttgcaatcagagtgtttgctcagtaatgtagccaaggacaca
atataagcagttccaaataaataagttggctaaccacaccctacatctac
tagtagaattcaaattcacagtacatttttctcctcattgctctcctccg
ttcctgttggccaggaggcccagcaggagatgaggcaacacactattctt
ccctgtcacagatgtcactgtagtgggccaaagggaaaaaatctaggttg
tctggctttgatcaagtacaaagtaaaactctgacatggcattaggataa
tgcaccttaagttcaaaattgtgagaaaatagccttaagaaaaagtgaga
cattgtatccaggagtagaggaaaaaaaaagcctctgtctagaaccaaag
cgttgaaataaaaacaaatgcctgtatgaacaaatcccaactcctatgct
t
gaattcattggaaaacaactcagaacaagataacccatttttggtactag
gattttatttctaccatgtggtatctaattaagatattgttatttttatg
tgtatgagtactgtgcctgcatgtatgaacatgaaccacatgaatacaca
gaacaaagataggccagaagagcataaactccttggaatttcaattgaag
caaattgtgaggtatcatgtgattgctggtgataggaactaggtcttctg
caaaagcagtgggtacttttacccctcggccatctctgtagcctcatatt
tcacattttaggcaagattttttttgtcaatctagcattaaattcaagaa
acacgcactgatatattccaatgttttatgagcagctatctagagttagt
tggtgctctgatttgaggaaaaatcttcaacgtcttaagagattattaat
ttcggtagtcaacaaatagcaatcttcactaaaggctcaaaaggaaatta
ttataaaaaaatgttagaagactgcaactttactgagcccagttctattt
cctacaatacaatactagcatctcactcccccatcagatttctcaaatgg
ttattgatggttgttttctagataaaatcatttggacaaaatatatatta
ctttatgtcagtgagatatttatagtaagtacccaagcatactaaattta
tctatcatctgtaatttaatgatacatttttactatctaactatatctgt
catctatccccaatctataatcctttgttttttgtataactttggccttg
aacaaccaagtgatacatgagtttcacattgtcattatttcagtctttat
gtctgaatgtggtttgccattattgaattagatttttatctcattagtta
tatatatatatatatatatatatatatatatatattagaatttatataaa
acgtaaggttttaagtttatttgaaaaaataacacttcgaaggatataac
cttttattacacagtgtttcctaatgcaatctttttgaagataccatggg
aggtgacttcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_12953815_12954980
seq2: B6Ng01-131F19.b_49_1199

seq1  GAATTCAAAACAGCTAGTCCACACTGTATTCTTAGTCCATAGCTGCAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACAGCTAGTCCACACTGTATTCTTAGTCCATAGCTGCAGCG  50

seq1  AGGTAACATTCATTTTAGTTTTCCATACTATTTATAGATTGTAGAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACATTCATTTTAGTTTTCCATACTATTTATAGATTGTAGAAAGTA  100

seq1  ATTGTATGTAATTATGGAGTACAACACGATTCTTCAATTGCTTCATTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGTAATTATGGAGTACAACACGATTCTTCAATTGCTTCATTTTG  150

seq1  TGCTTAGTATGTGGAATGATTAAATTAGGCTAAGTAACAATTACAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGTATGTGGAATGATTAAATTAGGCTAAGTAACAATTACAGTGAA  200

seq1  AGACAGAGAGAGAGATAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGAGAGAGATAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  250

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGATTGTATCTATTTGGGATATGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGATTGTATCTATTTGGGATATGCCA  300

seq1  AATCTTTTGGTAGAAAAAAAACTGTAAAGAATAGAATGTACAATGATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTGGTAGAAAAAAAACTGTAAAGAATAGAATGTACAATGATATA  350

seq1  CAGTGTTTCAGTTAGTCAAGTATATTTTTATATAATTTTTGGTTATTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTCAGTTAGTCAAGTATATTTTTATATAATTTTTGGTTATTCTG  400

seq1  ATGTTTGTTGTGCAACCATAGTAATATGATATCTATACAATAATAGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTTGTGCAACCATAGTAATATGATATCTATACAATAATAGTTCT  450

seq1  ATTTAGAATTTACCACTACTTATGTAGCATTTGTTGTGTAATGTCACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAATTTACCACTACTTATGTAGCATTTGTTGTGTAATGTCACTTT  500

seq1  GAAGGTGTGAGAGTTTTCCCACTAAGTGATGTCATTCTTTGTATCCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTGAGAGTTTTCCCACTAAGTGATGTCATTCTTTGTATCCATTC  550

seq1  TCTTGAGTGGCAATCAGCTACTAAGGTTTTCTTAGAGACCAAAATTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTGGCAATCAGCTACTAAGGTTTTCTTAGAGACCAAAATTTATT  600

seq1  GCACTTTATTGTATTTTTTGAAAGAATACCTGTAAGAAGAAACACACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTATTGTATTTTTTGAAAGAATACCTGTAAGAAGAAACACACAAG  650

seq1  AAGATTTGCTATGTAGAACAAATAAACTCTAACAAAGACCGGGAAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTGCTATGTAGAACAAATAAACTCTAACAAAGACCGGGAAGAGAG  700

seq1  AACATCATTTGCAATCAGAGTGTTTGCTCAGTAATGTAGCCAAGGACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATTTGCAATCAGAGTGTTTGCTCAGTAATGTAGCCAAGGACACA  750

seq1  ATATAAGCAGTTCCAAATAAATAAGTTGGCTAACCACACCCTACATCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGCAGTTCCAAATAAATAAGTTGGCTAACCACACCCTACATCTAC  800

seq1  TAGTAGAATTCAAATTCACAGTACATTTTTCTCCTCATTGCTCTCCTCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGAATTCAAATTCACAGTACATTTTTCTCCTCATTGCTCTCCTCCG  850

seq1  TTCCTGTTGGCCAGGAGGCCCAGCAGGAGATGAGGCAACACACTATTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTGGCCAGGAGGCCCAGCAGGAGATGAGGCAACACACTATTCTT  900

seq1  CCCTGTCACAGATGTCACTGTAGTGGGCCAAAGGGAAAAAAATCTAGGTT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCCTGTCACAGATGTCACTGTAGTGGGCCAAAGGG-AAAAAATCTAGGTT  949

seq1  GTCTGGCTTTGAATCAAGTACAAAGTAAAACTCTGACATGGCATTAAGAT  1000
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  GTCTGGCTTTG-ATCAAGTACAAAGTAAAACTCTGACATGGCATTAGGAT  998

seq1  AAATGCACCTTAAAGTTCAAAAATGTGAGAAAATAAGCCATAAGAAAAAA  1050
       |||||||||| |||||||||| ||||||||||| |||| |||| |||||
seq2  -AATGCACCTT-AAGTTCAAAATTGTGAGAAAAT-AGCCTTAAG-AAAAA  1044

seq1  GTGAGACATTGTATCCAGGAGTAGAGGAAAAAAAAAAAGCCTCTGTCTAA  1100
      |||||||||||||||||||||||||||  ||||||||||||||||||| |
seq2  GTGAGACATTGTATCCAGGAGTAGAGG--AAAAAAAAAGCCTCTGTCT-A  1091

seq1  GAAACAGAAGCGTTAGAATAAAAAACAAAATTGCTTTTATGAACAAATCC  1150
      ||| || ||||||| |||  |||||||||  ||| | |||||||||||||
seq2  GAACCA-AAGCGTT-GAAATAAAAACAAA--TGCCTGTATGAACAAATCC  1137

seq1  CCAAACTCATATGCTT  1166
      |  ||||| |||||||
seq2  C--AACTCCTATGCTT  1151

seq1: chr3_13070165_13071226
seq2: B6Ng01-131F19.g_68_1130 (reverse)

seq1  CCTGAAGTCACCTCCCATGCTATCTCTGAAAAAGTTTGCATAAGAAAACA  50
      ||||||||||||||||||| ||||| | |||||| |||||| || |||||
seq2  CCTGAAGTCACCTCCCATGGTATCT-TCAAAAAGATTGCATTAGGAAACA  49

seq1  CTGTGTAATAAAAAGATTATATCCTTCAAAGTGTTATTTTATCAAAT-AA  99
      ||||||||| ||||| ||||||||||| |||||||||||| |||||| ||
seq2  CTGTGTAAT-AAAAGGTTATATCCTTCGAAGTGTTATTTTTTCAAATAAA  98

seq1  CTT-AAACCTTACGTTTTATATTAATTCTAATATATATATATATATATAT  148
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTAAAACCTTACGTTTTATATAAATTCTAATATATATATATATATATAT  148

seq1  ATATATATATATATATAACTAATGAGATAAAAATCTAATTCAATAATGGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATAACTAATGAGATAAAAATCTAATTCAATAATGGC  198

seq1  AAACCACATTCAGACATAAAGACTG-AATAATGACAATGTGAAACTCATG  247
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAACCACATTCAGACATAAAGACTGAAATAATGACAATGTGAAACTCATG  248

seq1  TATCACTTGGTTGTTCAAGGCCAAAGTTATACAAAAAACAAAGGATTATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTGGTTGTTCAAGGCCAAAGTTATACAAAAAACAAAGGATTATA  298

seq1  GATTGGGGATAGATGACAGATATAGTTAGATAGTAAAAATGTATCATTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGGATAGATGACAGATATAGTTAGATAGTAAAAATGTATCATTAA  348

seq1  ATTACAGATGATAGATAAATTTAGTATGCTTGGGTACTTACTATAAATAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGATGATAGATAAATTTAGTATGCTTGGGTACTTACTATAAATAT  398

seq1  CTCACTGACATAAAGTAATATATATTTTGTCCAAATGATTTTATCTAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGACATAAAGTAATATATATTTTGTCCAAATGATTTTATCTAGAA  448

seq1  AACAACCATCAATAACCATTTGAGAAATCTGATGGGGGAGTGAGATGCTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCATCAATAACCATTTGAGAAATCTGATGGGGGAGTGAGATGCTA  498

seq1  GTATTGTATTGTAGGAAATAGAACTGGGCTCAGTAAAGTTGCAGTCTTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTATTGTAGGAAATAGAACTGGGCTCAGTAAAGTTGCAGTCTTCT  548

seq1  AACATTTTTTTATAATAATTTCCTTTTGAGCCTTTAGTGAAGATTGCTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTTTATAATAATTTCCTTTTGAGCCTTTAGTGAAGATTGCTAT  598

seq1  TTGTTGACTACCGAAATTAATAATCTCTTAAGACGTTGAAGATTTTTCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGACTACCGAAATTAATAATCTCTTAAGACGTTGAAGATTTTTCCT  648

seq1  CAAATCAGAGCACCAACTAACTCTAGATAGCTGCTCATAAAACATTGGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGAGCACCAACTAACTCTAGATAGCTGCTCATAAAACATTGGAA  698

seq1  TATATCAGTGCGTGTTTCTTGAATTTAATGCTAGATTGACAAAAAAAATC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAGTGCGTGTTTCTTGAATTTAATGCTAGATTGACAAAAAAAATC  748

seq1  TTGCCTAAAATGTGAAATATGAGGCTACAGAGATGGCCGAGGGGTAAAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAAAATGTGAAATATGAGGCTACAGAGATGGCCGAGGGGTAAAAG  798

seq1  TACCCACTGCTTTTGCAGAAGACCTAGTTCCTATCACCAGCAATCACATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACTGCTTTTGCAGAAGACCTAGTTCCTATCACCAGCAATCACATG  848

seq1  ATACCTCACAATTTGCTTCAATTGAAATTCCAAGGAGTTTATGCTCTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCACAATTTGCTTCAATTGAAATTCCAAGGAGTTTATGCTCTTCT  898

seq1  GGCCTATCTTTGTTCTGTGTATTCATGTGGTTCATGTTCATACATGCAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTATCTTTGTTCTGTGTATTCATGTGGTTCATGTTCATACATGCAGG  948

seq1  CACAGTACTCATACACATAAAAATAACAATATCTTAATTAGATACCACAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTACTCATACACATAAAAATAACAATATCTTAATTAGATACCACAT  998

seq1  GGTAGAAATAAAATCCTAGTACCAAAAATGGGTTATCTTGTTCTGAGTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAATAAAATCCTAGTACCAAAAATGGGTTATCTTGTTCTGAGTTG  1048

seq1  TTTTCCAATGAATTC  1062
      |||||||||||||||
seq2  TTTTCCAATGAATTC  1063