BAC Information

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BAC

Clone NameB6Ng01-131I10
Chromosome3 (Build37)
Map Location 117,449,541 - 117,577,682
singlet/doubletdoublet
Overlap geneEG668759, Snx7
Upstream geneAgl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik
Downstream geneLOC100043260, Dpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131I10.bB6Ng01-131I10.g
ACCDH932562DH932563
length1,1581,074
definitionDH932562|Mus musculus domesticus DNA, BAC clone: B6Ng01-131I10, 5' end.DH932563|Mus musculus domesticus DNA, BAC clone: B6Ng01-131I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,449,541 - 117,450,717)(117,576,605 - 117,577,682)
sequence
gaattcagagatctgtgtctggtagcaattcttcaacacttcgatgaaat
atgacacttgcatcactacccactcaaaaggtgagaccagttggaaaaca
cctccataagcccttattttggatcagtacaactaatcctcaaagttttc
tgctttctgttctctgactatgtatgccaaggaacatggaaactcccaat
ctaataaccccagtctctgttattgtaagaattaatttgggcagaaggct
aagccaatagttagaaatgaaagtccttcattatcagattgttaaaaaaa
aaaaaagcaattcttacaattagatttgtttgtagtcttagtctatgaat
tgattgccatgtagttactggaccacaaaaggcaaggaacctattcaatt
aaaacataagaactctgagaagtcacagcacagaaaatttcctgttctcc
ctttctgtctattcatcttaatataatttaatataaaaccccactaaata
ggtttagcaaatgtatttataaagtgagctgaattaacatgatagaacag
ggtaatagtgcccaacaagaagacatttgcaacagataggaaagggtaat
attactcaacaaaaaagcatttgaaactttagagatcataagacaatgtt
ttaaatatcttctccaaaggattttgcatgaaaaataagcattaaattat
gataacttagttattatcaggatgtacttttaactaaatgctttttcaca
aacttataatttgagtcttattttgcttggacaatatccccagctttaga
taagtaacatttaccttagagtatttgttggggaggaaggtgaataatat
tgtcataaattcatgaaaacctcaagatttccaggataatgcttcactaa
tggaatacacggcttcagaaaacagagggttgattagaaatgaatggtat
gttcctttccagaaagaagagattaaatgagaaaatgtgacattctttct
gctagaatgttgatgatgtgaagtgtgagaacaggccacttagatcaggg
acatggggaaggactacttacagccctatgcacagacatggcatttgaca
ccgggaatcactgactttgtaaatctgatgaatatgggccttacattcct
caaagcca
gaattcagtcacaaaagacctacaaattactcaaatatatatatttggtg
aaatgtgcacactgggtaaatttagagatttaaaaattagattatcagtt
ctaagagctgcacctggaagtacataggaatgaatattaatgtaggcaga
gcctccctttgggtgtgatgaaaaagtcctataatttatgttgtcagtgg
ctgaacaaaccatgattgtaaactactgagttgagtattttaaacaggca
aattaaatgctgtgtaaattaaactccaataaagatatttttaaaaagaa
gacagaactgtcattagcctcagttttatgatatgcttcctatctaagaa
catcttccttcaacactatcagcagactatagcaataccttgatgaccag
aatattctacagaagtcatttttgccaactttaagtgaagaaaatatctt
taagggaactgcagataagtttgactctgaataaaattctgaggtagcaa
agttctgatgaatatctttgtcaacacagcaagacgaagaggccagaaaa
acaactggaatttgtttttatttacaaataaatcaacactttagaaacaa
acttgacaacagcaagctgttataaaagcattccattcataaaatcgggt
aacattttttgaacaatgatcaactatctctagaagtcaacctccctctg
agttttccatggtgttaaataatatgttggcttcaagttctggctgatga
tcagcctgaatccctgtacttgatagcaggcttaaaatggatgtaggcta
ctttgatcatagaattacaagtgtactctatgcttgttgaagtttcctaa
gttaaagatgtttaaaatgatgcatatttattatttcactgtgttttatt
tgttgcaaaaaagacatatttctcatgcaatttccagcatactacaacac
taagggcaccttttgacaacacacatttttagtggaagctgtattgcttg
ggactctaatgcaattacagggcaaatggtggcagtctgaaactactacc
taagtcaataacgctagcagtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117449541_117450717
seq2: B6Ng01-131I10.b_44_1201

seq1  GAATTCAGAGATCTGTGTCTGGTAGCAATTCTTCAACACTTCGATGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATCTGTGTCTGGTAGCAATTCTTCAACACTTCGATGAAAT  50

seq1  ATGACACTTGCATCACTACCCACTCAAAAGGTGAGACCAGTTGGAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACTTGCATCACTACCCACTCAAAAGGTGAGACCAGTTGGAAAACA  100

seq1  CCTCCATAAGCCCTTATTTTGGATCAGTACAACTAATCCTCAAAGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATAAGCCCTTATTTTGGATCAGTACAACTAATCCTCAAAGTTTTC  150

seq1  TGCTTTCTGTTCTCTGACTATGTATGCCAAGGAACATGGAAACTCCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTGTTCTCTGACTATGTATGCCAAGGAACATGGAAACTCCCAAT  200

seq1  CTAATAACCCCAGTCTCTGTTATTGTAAGAATTAATTTGGGCAGAAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAACCCCAGTCTCTGTTATTGTAAGAATTAATTTGGGCAGAAGGCT  250

seq1  AAGCCAATAGTTAGAAATGAAAGTCCTTCATTATCAGATTGTTAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAATAGTTAGAAATGAAAGTCCTTCATTATCAGATTGTTAAAAAAA  300

seq1  AAAAAAGCAATTCTTACAATTAGATTTGTTTGTAGTCTTAGTCTATGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCAATTCTTACAATTAGATTTGTTTGTAGTCTTAGTCTATGAAT  350

seq1  TGATTGCCATGTAGTTACTGGACCACAAAAGGCAAGGAACCTATTCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCCATGTAGTTACTGGACCACAAAAGGCAAGGAACCTATTCAATT  400

seq1  AAAACATAAGAACTCTGAGAAGTCACAGCACAGAAAATTTCCTGTTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAAGAACTCTGAGAAGTCACAGCACAGAAAATTTCCTGTTCTCC  450

seq1  CTTTCTGTCTATTCATCTTAATATAATTTAATATAAAACCCCACTAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTCTATTCATCTTAATATAATTTAATATAAAACCCCACTAAATA  500

seq1  GGTTTAGCAAATGTATTTATAAAGTGAGCTGAATTAACATGATAGAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGCAAATGTATTTATAAAGTGAGCTGAATTAACATGATAGAACAG  550

seq1  GGTAATAGTGCCCAACAAGAAGACATTTGCAACAGATAGGAAAGGGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATAGTGCCCAACAAGAAGACATTTGCAACAGATAGGAAAGGGTAAT  600

seq1  ATTACTCAACAAAAAAGCATTTGAAACTTTAGAGATCATAAGACAATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCAACAAAAAAGCATTTGAAACTTTAGAGATCATAAGACAATGTT  650

seq1  TTAAATATCTTCTCCAAAGGATTTTGCATGAAAAATAAGCATTAAATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATCTTCTCCAAAGGATTTTGCATGAAAAATAAGCATTAAATTAT  700

seq1  GATAACTTAGTTATTATCAGGATGTACTTTTAACTAAATGC-TTTTCACA  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GATAACTTAGTTATTATCAGGATGTACTTTTAACTAAATGCTTTTTCACA  750

seq1  AACTTATAATTTGAGTCTTATTTTGCTTGGACAATATCCCCAGCTTTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATAATTTGAGTCTTATTTTGCTTGGACAATATCCCCAGCTTTAGA  800

seq1  TAAGTAACATTTACCTTAGAGTATTTGTTGGGGAGGAAGGTGAATAATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAACATTTACCTTAGAGTATTTGTTGGGGAGGAAGGTGAATAATAT  850

seq1  TGTCATAAATTCCATGAAAAACCTCAAGATTTCCAGGATAATGCTTCACT  899
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  TGTCATAAATT-CATG-AAAACCTCAAGATTTCCAGGATAATGCTTCACT  898

seq1  AATGGAATTACACGGCTTCAGAAAACAAGAGGGTTGATTAGAAATGAATG  949
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  AATGGAA-TACACGGCTTCAGAAAAC-AGAGGGTTGATTAGAAATGAATG  946

seq1  GTATGTTCCTTTCCAGAAAAGGAAGAGATTAAAATGAGGAAAATGTGACA  999
      |||||||||||||||||||  ||||||||| |||||| ||||||||||||
seq2  GTATGTTCCTTTCCAGAAA--GAAGAGATT-AAATGA-GAAAATGTGACA  992

seq1  TTCTTTCTGCTAGAATGTTTGATGGAATGTGGAGGTGTGAG-ACAGGCAC  1048
      ||||||||||||||||| ||||||  |||| || ||||||| ||||||  
seq2  TTCTTTCTGCTAGAATG-TTGATG--ATGT-GAAGTGTGAGAACAGGCCA  1038

seq1  ATAAGATCAGGGAGCATGGGGAAGGAACTACAGACAGCCCTAGGCACAGG  1098
       | |||||||||| ||||||||||| |||||  ||||||||| ||||| |
seq2  CTTAGATCAGGGA-CATGGGGAAGG-ACTACTTACAGCCCTATGCACA-G  1085

seq1  ACAATGGCATTTGACAACAGGAATCCATGACTTTGTCAAACCTGGAATGA  1148
      || ||||||||||||| | ||||||  ||||||||| ||| |||  ||||
seq2  AC-ATGGCATTTGACACCGGGAATCACTGACTTTGT-AAATCTG--ATGA  1131

seq1  AGATATGGCCTTACATTCCTCATAAGCCA  1177
      | ||  |||||||||||||||| ||||||
seq2  ATAT-GGGCCTTACATTCCTCA-AAGCCA  1158

seq1: chr3_117576605_117577682
seq2: B6Ng01-131I10.g_68_1141 (reverse)

seq1  TTTACTGCTAGCGTTATTGACTTAAGTAGTAGTATCAGACTGCCA-CATT  49
      |||||||||||||||||||||||| |||||||| ||||||||||| ||||
seq2  TTTACTGCTAGCGTTATTGACTTAGGTAGTAGTTTCAGACTGCCACCATT  50

seq1  TGCCCTGTAATTGCATTTAGAGTCCCAAGCAATACAGCTTCCACTAAAAA  99
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGCCCTGTAATTGCA-TTAGAGTCCCAAGCAATACAGCTTCCACTAAAAA  99

seq1  TGTGTGTTGTCAAAAGGTGCTCCTTAGTGTTGTAGTATGCTGGAAATTGC  149
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTGTGTTGTCAAAAGGTGC-CCTTAGTGTTGTAGTATGCTGGAAATTGC  148

seq1  ATGAGAAATATTGTCTTTTTTTGCAACAAATAAAAACACAGTGAAATAAT  199
      |||||||||| |||| ||||||||||||||| ||||||||||||||||||
seq2  ATGAGAAATA-TGTC-TTTTTTGCAACAAAT-AAAACACAGTGAAATAAT  195

seq1  AAATATGCATCATTTTAAACATCTTTAACTTAGGAAACTTCAACAAGCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGCATCATTTTAAACATCTTTAACTTAGGAAACTTCAACAAGCAT  245

seq1  AGAGTACACTTGTAATTCTATGATCAAAGTAGCCTACATCCATTTTAAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACACTTGTAATTCTATGATCAAAGTAGCCTACATCCATTTTAAGC  295

seq1  CTGCTATCAAGTACAGGGATTCAGGCTGATCATCAGCCAGAACTTGAAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATCAAGTACAGGGATTCAGGCTGATCATCAGCCAGAACTTGAAGC  345

seq1  CAACATATTATTTAACACCATGGAAAACTCAGAGGGAGGTTGACTTCTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATATTATTTAACACCATGGAAAACTCAGAGGGAGGTTGACTTCTAG  395

seq1  AGATAGTTGATCATTGTTCAAAAAATGTTACCCGATTTTATGAATGGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTTGATCATTGTTCAAAAAATGTTACCCGATTTTATGAATGGAAT  445

seq1  GCTTTTATAACAGCTTGCTGTTGTCAAGTTTGTTTCTAAAGTGTTGATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATAACAGCTTGCTGTTGTCAAGTTTGTTTCTAAAGTGTTGATTT  495

seq1  ATTTGTAAATAAAAACAAATTCCAGTTGTTTTTCTGGCCTCTTCGTCTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAATAAAAACAAATTCCAGTTGTTTTTCTGGCCTCTTCGTCTTG  545

seq1  CTGTGTTGACAAAGATATTCATCAGAACTTTGCTACCTCAGAATTTTATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGACAAAGATATTCATCAGAACTTTGCTACCTCAGAATTTTATT  595

seq1  CAGAGTCAAACTTATCTGCAGTTCCCTTAAAGATATTTTCTTCACTTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCAAACTTATCTGCAGTTCCCTTAAAGATATTTTCTTCACTTAAA  645

seq1  GTTGGCAAAAATGACTTCTGTAGAATATTCTGGTCATCAAGGTATTGCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAAAAATGACTTCTGTAGAATATTCTGGTCATCAAGGTATTGCTA  695

seq1  TAGTCTGCTGATAGTGTTGAAGGAAGATGTTCTTAGATAGGAAGCATATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGCTGATAGTGTTGAAGGAAGATGTTCTTAGATAGGAAGCATATC  745

seq1  ATAAAACTGAGGCTAATGACAGTTCTGTCTTCTTTTTAAAAATATCTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTGAGGCTAATGACAGTTCTGTCTTCTTTTTAAAAATATCTTTA  795

seq1  TTGGAGTTTAATTTACACAGCATTTAATTTGCCTGTTTAAAATACTCAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTTAATTTACACAGCATTTAATTTGCCTGTTTAAAATACTCAAC  845

seq1  TCAGTAGTTTACAATCATGGTTTGTTCAGCCACTGACAACATAAATTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGTTTACAATCATGGTTTGTTCAGCCACTGACAACATAAATTATA  895

seq1  GGACTTTTTCATCACACCCAAAGGGAGGCTCTGCCTACATTAATATTCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTTCATCACACCCAAAGGGAGGCTCTGCCTACATTAATATTCAT  945

seq1  TCCTATGTACTTCCAGGTGCAGCTCTTAGAACTGATAATCTAATTTTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGTACTTCCAGGTGCAGCTCTTAGAACTGATAATCTAATTTTTAA  995

seq1  ATCTCTAAATTTACCCAGTGTGCACATTTCACCAAATATATATATTTGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAAATTTACCCAGTGTGCACATTTCACCAAATATATATATTTGAG  1045

seq1  TAATTTGTAGGTCTTTTGTGACTGAATTC  1078
      |||||||||||||||||||||||||||||
seq2  TAATTTGTAGGTCTTTTGTGACTGAATTC  1074