BAC Information

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BAC

Clone NameB6Ng01-131J02
Chromosome3 (Build37)
Map Location 115,570,283 - 115,734,381
singlet/doubletdoublet
Overlap geneDph5, LOC626061, Slc30a7, Extl2
Upstream geneOlfm3, EG546808, Edg1
Downstream geneVcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131J02.bB6Ng01-131J02.g
ACCDH932592DH932593
length9591,135
definitionDH932592|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J02, 5' end.DH932593|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,570,283 - 115,571,238)(115,733,231 - 115,734,381)
sequence
gaattcacagcacagttattcttggctcctcatggagctttgcacaaaca
cttgtcagcctgaaaaatagcacaaatggtgacctccacgatccagcaca
aatctaaacattaacacttatgaacctcactcaagcttacaaaatgtaag
ctgcattttgctacaagaaatacatcttagtatattaaaaacgtgttaac
gtgtattatttaacaacgctagcagtgttaaacagtgagtccattctctc
attgtaaatgtggtgtttgttaaattatactttttaaatcagtatttcag
aacttttatttatttattttactgagtgactatccacatgtacagtggtg
cacatgtggaggtcagagggatttaaaaatcagatctctctttctacctt
gtttttgaggcaactacagtgcacggatacgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgttgcccaccaaattaggttttatttttgttttttatg
attattttttagattttttatgtgttttttatgtgcaatgctattttttt
cttacatgtatgtctgtgtgtcagatcccctggaactggagttacaaaca
gttgtgaactacaatgtagacactggaaattgaaccaggatcctttggaa
gagaagccagtgatctaaacctctaagccatctctctaacctcaacatct
ggttttttggttttcttttttttttaatgtaaattgtaagaagcaaactt
aggtcatcacgtttgtgcagctgttacccaatgaccagttatgagactcc
accttaactgctttccactgcaaaagatgagacatctttgaccaaaggct
gagagctacttatagatataggtggtaagaagggcaggttgatgtcaatt
ctactcatttaagaaaagtggatcaaaattggaagatgaaaagctgaaat
aagaatttt
gaattctctctgtggacaggcatgatacccttgcctataatcccagtgat
caagacactgagacaggaagaccctaaactgaaggatgagccagatgata
aactaaagaccagactggactacagagcaaaaacaaacaagcaaacaaac
aaacaagcaagcaagcacatcctttgctgcagtgggcttcctaaactgtt
ttggtgtttgcagaggcttgctctctttcaacgctatgattttgatccac
ccatacttcataactaacttcaaaaatcacctggctgcacggtccttttt
ctttgatgggtatttctgtgatttctgaaggcactgtcaaattctttctg
gtatacagcatccttcccaaacaagtgcaacatgtaaagtttcatggcaa
atgttcctttcatccttaccctacagggaaggacattaagaagggtcagg
acccagtgcaagtgtgtgttagaaaataaatgggttttatgttgtgagag
acttcacagaaggagagaatatggaggtgaatcaagaccaggacttgtgt
gttggggcggggtggagggagaacaaagttgggagtcttagtaagacaaa
agctgacatcggcggtctattaattacatgtctatacagcaacctggaaa
tagttcctagaagcatttttaaagcttcctgaagcttttaccgccctttg
agctgtcactgaacacttccttgtctgtctgttcggcctcctcaacatca
agttctgtgaaggagaagcctttaataccctgaaaccctcagatatttta
tgtggaacgagcagatgacaggaaaacggaaatgccggaagtcaggaagg
ctgggggaaacaggtgttctcagatgtgctattaatagtgtcaccatgac
aacagttgtagaggaatctagcagtatgtatcaagctcataaagaaatga
atctcactagatcgatccagtgtgcaatttcgtggacttcattttaagga
catcaccgggctatgcctcatagatctgtagtagggtgatgtatccagta
ttgccatgccagagtagcagtgtactgggaagcagctgccagtacgagtc
tgtctcctcacactgtgatgacaaggacaggctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_115570283_115571238
seq2: B6Ng01-131J02.b_48_1005

seq1  GAATTCACAGCACAGTTATTCTTGGCTCCTCATGGAGCTTTGCACAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCACAGTTATTCTTGGCTCCTCATGGAGCTTTGCACAAACA  50

seq1  CTTGTCAGCCTGAAAAATAGCACAAATGGTGACCTCCACGATCCAGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAGCCTGAAAAATAGCACAAATGGTGACCTCCACGATCCAGCACA  100

seq1  AATCTAAACATTAACACTTATGAACCTCACTCAAGCTTACAAAATGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAACATTAACACTTATGAACCTCACTCAAGCTTACAAAATGTAAG  150

seq1  CTGCATTTTGCTACAAGAAATACATCTTAGTATATTAAAAACGTGTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTTGCTACAAGAAATACATCTTAGTATATTAAAAACGTGTTAAC  200

seq1  GTGTATTATTTAACAACGCTAGCAGTGTTAAACAGTGAGTCCATTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTATTTAACAACGCTAGCAGTGTTAAACAGTGAGTCCATTCTCTC  250

seq1  ATTGTAAATGTGGTGTTTGTTAAATTATACTTTTTAAATCAGTATTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAATGTGGTGTTTGTTAAATTATACTTTTTAAATCAGTATTTCAG  300

seq1  AACTTTTATTTATTTATTTTACTGAGTGACTATCCACATGTACAGTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTATTTATTTATTTTACTGAGTGACTATCCACATGTACAGTGGTG  350

seq1  CACATGTGGAGGTCAGAGGGATTTAAAAATCAGATCTCTCTTTCTACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGGAGGTCAGAGGGATTTAAAAATCAGATCTCTCTTTCTACCTT  400

seq1  GTTTTTGAGGCAACTACAGTGCACGGATACGTGTGTGTGTGTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAGGCAACTACAGTGCACGGATACGTGTGTGTGTGTGTGTGTGT  450

seq1  GTGTGTGTGTGTGTTGCCCACCAAATTAGGTTTTATTTTTGTTTTTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTTGCCCACCAAATTAGGTTTTATTTTTGTTTTTTATG  500

seq1  ATTATTTTTTAGATTTTTTATGTGTTTTTTATGTGCAATGCTATTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTAGATTTTTTATGTGTTTTTTATGTGCAATGCTATTTTTTT  550

seq1  CTTACATGTATGTCTGTGTGTCAGATCCCCTGGAACTGGAGTTACAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATGTATGTCTGTGTGTCAGATCCCCTGGAACTGGAGTTACAAACA  600

seq1  GTTGTGAACTACAATGTAGACACTGGAAATTGAACCAGGATCCTTTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAACTACAATGTAGACACTGGAAATTGAACCAGGATCCTTTGGAA  650

seq1  GAGAAGCCAGTGATCTAAACCTCTAAGCCATCTCTCTAACCTCAACATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCAGTGATCTAAACCTCTAAGCCATCTCTCTAACCTCAACATCT  700

seq1  GGTTTTTTGGTTTTCTTTTTTTTTTAATGTAAATTGTAAGAAGCAAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTGGTTTTCTTTTTTTTTTAATGTAAATTGTAAGAAGCAAACTT  750

seq1  AGGTCATCACGTTTGTGCAGCTGTTACCCAATGACCAGTTATGAGACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATCACGTTTGTGCAGCTGTTACCCAATGACCAGTTATGAGACTCC  800

seq1  ACCTTAACTGCTTTCCACTGCAAAAGATGAGACATCTTTGACC-AAGGCT  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCTTAACTGCTTTCCACTGCAAAAGATGAGACATCTTTGACCAAAGGCT  850

seq1  GAGAGCTACTTATAGATATAGGTGGTTAGAA-GGCAGGTTGATGTCAAAT  898
      |||||||||||||||||||||||||| |||| |||||||||||||| |||
seq2  GAGAGCTACTTATAGATATAGGTGGTAAGAAGGGCAGGTTGATGTC-AAT  899

seq1  TCTACTCATTT-AGAAAAGGTGATCAAATCTGTAAGATGAAAAGCTAGAA  947
      ||||||||||| |||||||  |||||||  || |||||||||||||  ||
seq2  TCTACTCATTTAAGAAAAGTGGATCAAAATTGGAAGATGAAAAGCTGAAA  949

seq1  AAAGAATTT  956
       ||||||||
seq2  TAAGAATTT  958

seq1: chr3_115733231_115734381
seq2: B6Ng01-131J02.g_68_1202 (reverse)

seq1  CCAGCCTGCTCCCTTGTCATCCCAGTGTGAGGAGACCAGGACTCTGTACT  50
      ||||||||   |||||||||| ||||||||||||||   ||||| |||||
seq2  CCAGCCTG--TCCTTGTCATCACAGTGTGAGGAGAC--AGACTC-GTACT  45

seq1  CGCCAGCCTGC-TCCCAGTTCACTTGCTACCTCCTTGCTATGCAATACTG  99
       | ||| |||| ||||||| ||| ||||||   || ||   |||||||||
seq2  -GGCAG-CTGCTTCCCAGTACAC-TGCTAC--TCTGGCATGGCAATACTG  90

seq1  GATACATCACCCTACCTTACAGATCTATGA-GCATAGCCC-GTGATTGTT  147
      |||||||||||||||  ||||||||||||| ||||||||| |||| ||| 
seq2  GATACATCACCCTAC--TACAGATCTATGAGGCATAGCCCGGTGA-TGT-  136

seq1  CCCTTAAAATGAAGTCCAACGAAATTGCACACCTGGATCGATCTAGTGAG  197
       |||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  -CCTTAAAATGAAGTCC-ACGAAATTGCACA-CTGGATCGATCTAGTGAG  183

seq1  ATTCATTTCTTTTATGGGCTTTGATACATACTGCTAGATTCCTCTACAAC  247
      ||||||||| |||||| || ||||||||||||||||||||||||||||||
seq2  ATTCATTTC-TTTATGAGC-TTGATACATACTGCTAGATTCCTCTACAAC  231

seq1  TGTTGTCATGGTGACACTATTAATAGCACATCTGAGAACACCTGTTTCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCATGGTGACACTATTAATAGCACATCTGAGAACACCTGTTTCCC  281

seq1  CCAGCCTTCCTGACTTCCGGCATTTCCGTTTTCCTGTCATCTGCTCGTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTCCTGACTTCCGGCATTTCCGTTTTCCTGTCATCTGCTCGTTC  331

seq1  CACATAAAATATCTGAGGGTTTCAGGGTATTAAAGGCTTCTCCTTCACAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAATATCTGAGGGTTTCAGGGTATTAAAGGCTTCTCCTTCACAG  381

seq1  AACTTGATGTTGAGGAGGCCGAACAGACAGACAAGGAAGTGTTCAGTGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATGTTGAGGAGGCCGAACAGACAGACAAGGAAGTGTTCAGTGAC  431

seq1  AGCTCAAAGGGCGGTAAAAGCTTCAGGAAGCTTTAAAAATGCTTCTAGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAAGGGCGGTAAAAGCTTCAGGAAGCTTTAAAAATGCTTCTAGGA  481

seq1  ACTATTTCCAGGTTGCTGTATAGACATGTAATTAATAGACCGCCGATGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCCAGGTTGCTGTATAGACATGTAATTAATAGACCGCCGATGTC  531

seq1  AGCTTTTGTCTTACTAAGACTCCCAACTTTGTTCTCCCTCCACCCCGCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGTCTTACTAAGACTCCCAACTTTGTTCTCCCTCCACCCCGCCC  581

seq1  CAACACACAAGTCCTGGTCTTGATTCACCTCCATATTCTCTCCTTCTGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACACAAGTCCTGGTCTTGATTCACCTCCATATTCTCTCCTTCTGTG  631

seq1  AAGTCTCTCACAACATAAAACCCATTTATTTTCTAACACACACTTGCACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTCACAACATAAAACCCATTTATTTTCTAACACACACTTGCACT  681

seq1  GGGTCCTGACCCTTCTTAATGTCCTTCCCTGTAGGGTAAGGATGAAAGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTGACCCTTCTTAATGTCCTTCCCTGTAGGGTAAGGATGAAAGGA  731

seq1  ACATTTGCCATGAAACTTTACATGTTGCACTTGTTTGGGAAGGATGCTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCCATGAAACTTTACATGTTGCACTTGTTTGGGAAGGATGCTGT  781

seq1  ATACCAGAAAGAATTTGACAGTGCCTTCAGAAATCACAGAAATACCCATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGAAAGAATTTGACAGTGCCTTCAGAAATCACAGAAATACCCATC  831

seq1  AAAGAAAAAGGACCGTGCAGCCAGGTGATTTTTGAAGTTAGTTATGAAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGGACCGTGCAGCCAGGTGATTTTTGAAGTTAGTTATGAAGT  881

seq1  ATGGGTGGATCAAAATCATAGCGTTGAAAGAGAGCAAGCCTCTGCAAACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGGATCAAAATCATAGCGTTGAAAGAGAGCAAGCCTCTGCAAACA  931

seq1  CCAAAACAGTTTAGGAAGCCCACTGCAGCAAAGGATGTGCTTGCTTGCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACAGTTTAGGAAGCCCACTGCAGCAAAGGATGTGCTTGCTTGCTT  981

seq1  GTTTGTTTGTTTGCTTGTTTGTTTTTGCTCTGTAGTCCAGTCTGGTCTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGCTTGTTTGTTTTTGCTCTGTAGTCCAGTCTGGTCTTT  1031

seq1  AGTTTATCATCTGGCTCATCCTTCAGTTTAGGGTCTTCCTGTCTCAGTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATCATCTGGCTCATCCTTCAGTTTAGGGTCTTCCTGTCTCAGTGT  1081

seq1  CTTGATCACTGGGATTATAGGCAAGGGTATCATGCCTGTCCACAGAGAGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCACTGGGATTATAGGCAAGGGTATCATGCCTGTCCACAGAGAGA  1131

seq1  ATTC  1151
      ||||
seq2  ATTC  1135