BAC Information

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BAC

Clone NameB6Ng01-131K24
Chromosome3 (Build37)
Map Location 104,251,018 - 104,373,149
singlet/doubletdoublet
Overlap geneLrig2
Upstream geneSyt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3, EG433634, LOC668622
Downstream geneSlc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131K24.bB6Ng01-131K24.g
ACCDH932680DH932681
length1,1211,147
definitionDH932680|Mus musculus domesticus DNA, BAC clone: B6Ng01-131K24, 5' end.DH932681|Mus musculus domesticus DNA, BAC clone: B6Ng01-131K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,372,021 - 104,373,149)(104,251,018 - 104,252,148)
sequence
gaattcactgagtagaccaggctaccctctaactcagcctcccaaattct
gggattgaaggctgacaccactgccacctggctatttatttgtgcattgt
tatagacttgattctagaagcagctctagaggtgagagcatgtaatcctc
aaatctgggacagagagaaggagatttacctcaagactcttgtctccaaa
aatccagaatgagtagatgataaactgagcagagagatatagggttggat
gttggaccagcatgatggcctcctggggttccgtcctttcccagcccact
tgccccttcccttttgactttgcattgtgaagttgtcacttaaaaatctc
tgcttaccaagcacccctcaaccacgttatctaatctaagcaggtcattg
tgcacgtgtcttctcattacctctgctcttcctcgtctcccaccagcaca
caaatcttgttgaaacagacaacttacctggcttaggaccagaattaagg
tggtgtgacggctatgtgacctggcgccaggcagtgaagggttggggatt
cctcttcctcccttgggaccctggtggtggtcagtggtcggaggaagtgc
ttctgctcctcgctggcctactttttgcctcggtgacctttgacacactg
ctctgccctgagcttcggtttggacagaattccaggtcatccttccttcc
ccagcagatgcgaagaccagaaaagagaaaagggcaagaatgagtctcag
cagagcagtggggcctctggctatggtgccttttctttttcttacctttt
cctgtctccccccacctctgggtgaatcttattaatttatttttacttta
taaaatagaaaaaaattataaaaattttaaaaaatatataaaattttata
aaaatttgaactctataaaacctgctttttccaggcaaggtggctctggt
ctgtaatcccagtaccaggaagtgggaggcaagtctgtgcaacatgaacc
aagtagggtgtttgttttaaacgttaatgattttttttttgtggatttca
caaccaataaccccaatcccactcatcttctctggtcccttcgttctgcc
tttgccttgcaccctcccccc
gaattcctaggagctcaaggtggaaggtggagactgacacccaaggctgt
cctgtcacgtatgcaccatagcacatacacccatatccatgctctctcct
tgatataccacacacacacacacacacacacacacacacacacacacaca
cacatgggtggggatgagatgaaaataaaaacagcaaaccaaaaactaac
agctggtcgtggtggtacaagactttaatctcagcactcgaggcagaggc
agagaggcagagaggcagagaggcagagaggcagagaggcagagaggcag
agaggcagagaggcagagaggcagaggcaggtggaaattcctgtaaattt
gataccagcctggcctacatagtggattccaggacagccagggctacata
acagagagaccctgtttgaaaacaaaacaaagctgagcacagtgacatct
gcctactcaggagatggagcaagatgatcacactgtgctgcatagtgagg
ttgaagctggcctggactacatgagaccccaaccaaaaaacaaaaatcaa
aaatcaaaaaacggggggtgggggcagctacggaaggaatgaaagaagaa
acaagcaaacaaacaaaatcccaaactggtcagtgcccagtgtcttactg
tagaaaggggctttggagcacatgacctcaggcaaatcatataatctgga
atgaactccttacttacaaagaaggaatctgaccagcttggctgggtcgt
tggaagactatgtctattagagctccagactgggtaaggaatgtttttga
gtgggctgaagagatgggctcagaagctaagagcaagtacacacacacac
acaactaggttcatgtgtaccacacacatgtaaggtacctacagacaaca
gatcccctggaactggaactcgagtttaaagctgtcttgaagctgcctaa
tatgggtactgggaatcaaccccaggcccttctaacatgctcttaacctc
ttcgtcattttctccaggtccaaatctgagctgtcaagaaaccgctggct
gaaaaaccgcagcaagaggtagccaaatccaacaggccaaacaggctttt
tttcaggcattaaacccaagccaacattgaaacacccaaattggcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_104372021_104373149
seq2: B6Ng01-131K24.b_50_1170 (reverse)

seq1  GGGGGGAGGGTGCAAGGGCAGAGGGCAGATACGAAGGGA-CAGAG-AGAT  48
      ||||||||||||||| |||| | |||||| ||||||||| ||||| ||||
seq2  GGGGGGAGGGTGCAA-GGCA-AAGGCAGA-ACGAAGGGACCAGAGAAGAT  47

seq1  GAGTGGGATTGGGG-TATATGGTGTGAAATTCACAAAAAAAAAATCAATA  97
      |||||||||||||| |||  | |||||||| |||||||||||||||| | 
seq2  GAGTGGGATTGGGGTTATTGGTTGTGAAATCCACAAAAAAAAAATCATT-  96

seq1  AAACGTTTAAAAAACAAAACACCCCTACTTGGTTCATGTTGCACAGACTT  147
       |||||||||||    ||||| ||||||||||||||||||||||||||||
seq2  -AACGTTTAAAA---CAAACA-CCCTACTTGGTTCATGTTGCACAGACTT  141

seq1  GCCTCCCACCTTCCTGGTACTGGGATTACAGACCAGAGCCACCTTGCCTG  197
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCA-CTTCCTGGTACTGGGATTACAGACCAGAGCCACCTTGCCTG  190

seq1  GAAAAAGCAGGTTTTATAGAGTTCAAATTTTTATAAAATTTTATATATTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCAGGTTTTATAGAGTTCAAATTTTTATAAAATTTTATATATTT  240

seq1  TTTAAAATTTTTATAATTTTTTTCTATTTTATAAAGTAAAAATAAATTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTTTTATAATTTTTTTCTATTTTATAAAGTAAAAATAAATTAA  290

seq1  TAAGATTCACCCAGAGGTGGGGGGAGACAGGAAAAGGTAAGAAAAAGAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTCACCCAGAGGTGGGGGGAGACAGGAAAAGGTAAGAAAAAGAAA  340

seq1  AGGCACCATAGCCAGAGGCCCCACTGCTCTGCCTGAGACTCATTCTTGCC  397
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGCACCATAGCCAGAGGCCCCACTGCTCTG-CTGAGACTCATTCTTGCC  389

seq1  CTTTTCTCTTTTCTGGTCTTCGCATCTGCTGGGGAAGGAAGGATGACCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCTTTTCTGGTCTTCGCATCTGCTGGGGAAGGAAGGATGACCTG  439

seq1  GAATTCTGTCCAAACCGAAGCTCAGGGCAGAGCAGTGTGTCAAAGGTCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCAAACCGAAGCTCAGGGCAGAGCAGTGTGTCAAAGGTCAC  489

seq1  CGAGGCAAAAAGTAGGCCAGCGAGGAGCAGAAGCACTTCCTCCGACCACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCAAAAAGTAGGCCAGCGAGGAGCAGAAGCACTTCCTCCGACCACT  539

seq1  GACCACCACCAGGGTCCCAAGGGAGGAAGAGGAATCCCCAACCCTTCACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCACCAGGGTCCCAAGGGAGGAAGAGGAATCCCCAACCCTTCACT  589

seq1  GCCTGGCGCCAGGTCACATAGCCGTCACACCACCTTAATTCTGGTCCTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCGCCAGGTCACATAGCCGTCACACCACCTTAATTCTGGTCCTAA  639

seq1  GCCAGGTAAGTTGTCTGTTTCAACAAGATTTGTGTGCTGGTGGGAGACGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTAAGTTGTCTGTTTCAACAAGATTTGTGTGCTGGTGGGAGACGA  689

seq1  GGAAGAGCAGAGGTAATGAGAAGACACGTGCACAATGACCTGCTTAGATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCAGAGGTAATGAGAAGACACGTGCACAATGACCTGCTTAGATT  739

seq1  AGATAACGTGGTTGAGGGGTGCTTGGTAAGCAGAGATTTTTAAGTGACAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACGTGGTTGAGGGGTGCTTGGTAAGCAGAGATTTTTAAGTGACAA  789

seq1  CTTCACAATGCAAAGTCAAAAGGGAAGGGGCAAGTGGGCTGGGAAAGGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAATGCAAAGTCAAAAGGGAAGGGGCAAGTGGGCTGGGAAAGGAC  839

seq1  GGAACCCCAGGAGGCCATCATGCTGGTCCAACATCCAACCCTATATCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCCAGGAGGCCATCATGCTGGTCCAACATCCAACCCTATATCTCT  889

seq1  CTGCTCAGTTTATCATCTACTCATTCTGGATTTTTGGAGACAAGAGTCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGTTTATCATCTACTCATTCTGGATTTTTGGAGACAAGAGTCTT  939

seq1  GAGGTAAATCTCCTTCTCTCTGTCCCAGATTTGAGGATTACATGCTCTCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAATCTCCTTCTCTCTGTCCCAGATTTGAGGATTACATGCTCTCA  989

seq1  CCTCTAGAGCTGCTTCTAGAATCAAGTCTATAACAATGCACAAATAAATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGAGCTGCTTCTAGAATCAAGTCTATAACAATGCACAAATAAATA  1039

seq1  GCCAGGTGGCAGTGGTGTCAGCCTTCAATCCCAGAATTTGGGAGGCTGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTGGCAGTGGTGTCAGCCTTCAATCCCAGAATTTGGGAGGCTGAG  1089

seq1  TTAGAGGGTAGCCTGGTCTACTCAGTGAATTC  1129
      ||||||||||||||||||||||||||||||||
seq2  TTAGAGGGTAGCCTGGTCTACTCAGTGAATTC  1121

seq1: chr3_104251018_104252148
seq2: B6Ng01-131K24.g_68_1214

seq1  GAATTCCTAGGAGCTCAAGGTGGAAGGTGGAGACTGACACCCAAGGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGAGCTCAAGGTGGAAGGTGGAGACTGACACCCAAGGCTGT  50

seq1  CCTGTCACGTATGCACCATAGCACATACACCCATATCCATGCTCTCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACGTATGCACCATAGCACATACACCCATATCCATGCTCTCTCCT  100

seq1  TGATATACCACACACACACACACACACACACACACACACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATACCACACACACACACACACACACACACACACACACACACACACA  150

seq1  CACATGGGTGGGGATGAGATGAAAATAAAAACAGCAAACCAAAAACTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGTGGGGATGAGATGAAAATAAAAACAGCAAACCAAAAACTAAC  200

seq1  AGCTGGTCGTGGTGGTACAAGACTTTAATCTCAGCACTCGAGGCAGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTCGTGGTGGTACAAGACTTTAATCTCAGCACTCGAGGCAGAGGC  250

seq1  AGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAG  300

seq1  AGAGGCAGAGAGGCAGAGAGGCAGAGGCAGGTGGAAATTCCTGTAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAGAGGCAGAGAGGCAGAGGCAGGTGGAAATTCCTGTAAATTT  350

seq1  GATACCAGCCTGGCCTACATAGTGGATTCCAGGACAGCCAGGGCTACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCAGCCTGGCCTACATAGTGGATTCCAGGACAGCCAGGGCTACATA  400

seq1  ACAGAGAGACCCTGTTTGAAAACAAAACAAAGCTGAGCACAGTGACATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGACCCTGTTTGAAAACAAAACAAAGCTGAGCACAGTGACATCT  450

seq1  GCCTACTCAGGAGATGGAGCAAGATGATCACACTGTGCTGCATAGTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTCAGGAGATGGAGCAAGATGATCACACTGTGCTGCATAGTGAGG  500

seq1  TTGAAGCTGGCCTGGACTACATGAGACCCCAACCAAAAAACAAAAATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTGGCCTGGACTACATGAGACCCCAACCAAAAAACAAAAATCAA  550

seq1  AAATCAAAAAACGGGGGGTGGGGGCAGCTACGGAAGGAATGAAAGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAAAACGGGGGGTGGGGGCAGCTACGGAAGGAATGAAAGAAGAA  600

seq1  ACAAGCAAACAAACAAAATCCCAAACTGGTCAGTGCCCAGTGTCTTACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAACAAACAAAATCCCAAACTGGTCAGTGCCCAGTGTCTTACTG  650

seq1  TAGAAAGGGGCTTTGGAGCACATGACCTCAGGCAAATCATATAATCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGGGCTTTGGAGCACATGACCTCAGGCAAATCATATAATCTGGA  700

seq1  ATGAACTCCTTACTTACAAAGAAGGAATCTGACCAGCTTGGCTGGGTCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCCTTACTTACAAAGAAGGAATCTGACCAGCTTGGCTGGGTCGT  750

seq1  TGGAAGACTATGTCTATTAGAGCTCCAGACTGGGTAAGGAATGTTTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGACTATGTCTATTAGAGCTCCAGACTGGGTAAGGAATGTTTTTGA  800

seq1  GTGGGCTGAAGAGAT-GGCTCAGAAGCTAAGAGCAAGTACACACACACAC  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGAAGAGATGGGCTCAGAAGCTAAGAGCAAGTACACACACACAC  850

seq1  ACAACTA-GTTCATGTGTACCACACACATGTAAGGTACCTACAGACACCA  898
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  ACAACTAGGTTCATGTGTACCACACACATGTAAGGTACCTACAGACAACA  900

seq1  GATCCCCTGGAACTGGAACTCGAGTTATAAGCTGTCTTG-AGCTGCCTAA  947
      ||||||||||||||||||||||||||  ||||||||||| ||||||||||
seq2  GATCCCCTGGAACTGGAACTCGAGTTTAAAGCTGTCTTGAAGCTGCCTAA  950

seq1  TATGGGTACTGGGAATCAACCCCAGGCCC-TCT-ACATGCTCTTAACCTC  995
      ||||||||||||||||||||||||||||| ||| ||||||||||||||||
seq2  TATGGGTACTGGGAATCAACCCCAGGCCCTTCTAACATGCTCTTAACCTC  1000

seq1  TTCGTCA-TCTCTCCAGGTCCAAATCTGAGCTGTCAAGAAA-CGCTGGCT  1043
      ||||||| | ||||||||||||||||||||||||||||||| ||||||||
seq2  TTCGTCATTTTCTCCAGGTCCAAATCTGAGCTGTCAAGAAACCGCTGGCT  1050

seq1  GAACAA-CGCAGC-AGAGGTAG-CAAATCCAACAGGCCCAACA-GCCTTG  1089
      ||| || |||||| |||||||| ||||||||||||||| |||| || || 
seq2  GAAAAACCGCAGCAAGAGGTAGCCAAATCCAACAGGCCAAACAGGCTTTT  1100

seq1  TTTCAGGCATT-ACCACAAGCC-ACAT---GACACCCACATTGGCAA  1131
      ||||||||||| | | |||||| ||||    ||||||| ||||||||
seq2  TTTCAGGCATTAAACCCAAGCCAACATTGAAACACCCAAATTGGCAA  1147