BAC Information

Click to search

BAC

Clone NameB6Ng01-131O17
Chromosome3 (Build37)
Map Location 155,400,049 - 155,550,134
singlet/doubletdoublet
Overlap geneEG668902
Upstream geneBC007180, Tnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1
Downstream geneLOC624519, LOC100040901, 4930570G19Rik, Negr1, LOC100041152, LOC668853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131O17.bB6Ng01-131O17.g
ACCDH932856DH932857
length1,1461,075
definitionDH932856|Mus musculus domesticus DNA, BAC clone: B6Ng01-131O17, 5' end.DH932857|Mus musculus domesticus DNA, BAC clone: B6Ng01-131O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,548,968 - 155,550,134)(155,400,049 - 155,401,132)
sequence
gaattctaaatatgagataaagaaacggaatagataaacagattacatct
ggtaaacttgatatctctcactgacacacatcttggatccggcatactct
gaagaatttgtaaaaaaaaaaaaaaaagagttcagaaagaataactcttc
caaaagatgtaggttttcagcttattgtatgttgtgatcatcactctaat
acatgagctagaaaaaatgctaatatgctgaggtctgtggatataacagg
aggctcagtctacaaatctctgaaagatttcctttcggtattttggacac
ttatccattgctagaatgggtacttagacatttttcgtcttgtttttatt
ttttattcttacttagtctcaagatccagtggaatttaaaccttgatgga
agtgcagctcctgtgaaaataatcagtgtgactcacagtgagagcagaac
aacaacaaaaacatgggcatctttaagaaattaacagcaacagagagaaa
aggacacctgcatccttccaggatgttttctggcaggtgtgtggttgaga
ctgagggaaagtgtgaactgaccctgtcagaacaatccaaagcttaaagt
cacctcatttccctatctgtacatacgtgagaaatccaggaagctgttgt
ctttttcaaaggacacacatcccaatgctttctcctgggttccctggaac
atagtgatgatggaggcctggatgctgaaagacaggcagctcacctgact
ctgtagatttctaacaaggcttcttaacttaagttgcctcaaaatttact
tattcacttttattagaggagtagattttaaactgtggaatgcgttgaat
ctttgcaggtttcattttacttcttggttctattgctgtgattccaggac
tgtttcagagatttcagtagtgccacactaagattcttccctctttcctt
tgggaaatactgaggctttgacatgctcattaatcgtggcatacaattca
gctggggttggcaaatactacttataaaatataagttttaatttatgata
aaacacctaaactaatttatttcattgctggagtaacattatttggtttt
cccattttcttatggaaatagactcttcccccatggttcatcctga
gaattcccaagagagcatgtccataatcttttgtctaataattcagggca
aacagtgcacaggtcacagcaaggatgagactgaatgagagaacatttgg
gaaaatttaagagaatgtagagtttgttgaagacatacttcaaaagagtt
cttcctttggtaaaaattgtttagagtattcatcaataaactcagagaaa
aaattgctctgtctatgttgctgaaccaaaagaaggtctgccagagagga
aacaatgcattgactccacacactcactttttagtagagaagagacatta
gtctgcattatggtgatgtgagacctaaatgaatttcattttgtggacaa
gattagaagagagtaatgtaatttgaaaacatacattacttatgtgaact
tttataataaaatgctgtcagtatttccagaagatgagatgtttctttgc
ttttaggtaattaactagcagagtgaatataagagtgaatataagtcctt
ttaagtcttattttgtgttgtcaaatcaaggtaatttaaattcaaccact
atatatgcacctctatttaaagtaggtattcatacaaatcatgatttgca
aaacatgaaagtatgaatgataaacgggacttcaggacagcagagactaa
catcacattcactggtgtctatcccctttaaaaaatcaaattccattaaa
atttgaaaagaaataaaatcctgattggattctcttttcatccataacat
atacaattcatctatttaaatgcagtcattttcctgtggtttttggcccc
accaccaatctccccactaatgctgtatttcatacagcaaatattttact
agtcaaaccaatatggatattcctctcccttcagatgactgcccattaat
ctctgaatgctgaagtgctttgacgtaaatataataaacttctcttcatt
tttcttgtagccttcataataaatggatgtctcttgctaggtccaatcca
tttataccaagtagaatgatgttccctcttaacatgctaccctgagtccg
tgagccaactaatttcttatttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_155548968_155550134
seq2: B6Ng01-131O17.b_50_1195 (reverse)

seq1  TCAGGATGAACCATATGAGAGAAGAGTCTATTTTCAATAAAAAAAATGGA  50
      ||||||||||||  ||| | ||||||||||||| ||   || ||||||| 
seq2  TCAGGATGAACC--ATGGGGGAAGAGTCTATTTCCA--TAAGAAAATGG-  45

seq1  AAAAAACAAATAATGTTAACTACAAGGCAAATTGAAATAAATTAGTTTA-  99
       |||| ||||||||||| ||| ||  ||||  ||||||||||||||||| 
seq2  GAAAACCAAATAATGTT-ACTCCA--GCAA--TGAAATAAATTAGTTTAG  90

seq1  GTGTTTTAATCAATAAAATTAAAAAACTAATTATTTTAATAAGTAGTATG  149
      ||||||| ||||   |||||  |||||| | |||||| ||||||||||| 
seq2  GTGTTTT-ATCA--TAAATT--AAAACTTA-TATTTT-ATAAGTAGTATT  133

seq1  TGCCAACCCCAGCTGAATTGTATTGCCACGATTAATTGAGCAATGTTCAA  199
      |||||||||||||||||||||| |||||||||||| ||||| ||| ||||
seq2  TGCCAACCCCAGCTGAATTGTA-TGCCACGATTAA-TGAGC-ATG-TCAA  179

seq1  AGGCCTCAGTATTT-CCAAAGGAAAGAGGGGAAGAATCTTAGTGTGGCAC  248
      | |||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  A-GCCTCAGTATTTCCCAAAGGAAAGA-GGGAAGAATCTTAGTGTGGCAC  227

seq1  TACTGAAATCTCTGAAACAGTCCTGGAATCACAGCAATAGAACCAAGAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAATCTCTGAAACAGTCCTGGAATCACAGCAATAGAACCAAGAAG  277

seq1  TAAAATGAAACCTGCAAAGATTCAACGCATTCCACAGTTTAAAATCTACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAAACCTGCAAAGATTCAACGCATTCCACAGTTTAAAATCTACT  327

seq1  CCTCTAATAAAAGTGAATAAGTAAATTTTGAGGCAACTTAAGTTAAGAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAATAAAAGTGAATAAGTAAATTTTGAGGCAACTTAAGTTAAGAAG  377

seq1  CCTTGTTAGAAATCTACAGAGTCAGGTGAGCTGCCTGTCTTTCAGCATCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTAGAAATCTACAGAGTCAGGTGAGCTGCCTGTCTTTCAGCATCC  427

seq1  AGGCCTCCATCATCACTATGTTCCAGGGAACCCAGGAGAAAGCATTGGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCCATCATCACTATGTTCCAGGGAACCCAGGAGAAAGCATTGGGA  477

seq1  TGTGTGTCCTTTGAAAAAGACAACAGCTTCCTGGATTTCTCACGTATGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCCTTTGAAAAAGACAACAGCTTCCTGGATTTCTCACGTATGTA  527

seq1  CAGATAGGGAAATGAGGTGACTTTAAGCTTTGGATTGTTCTGACAGGGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGGGAAATGAGGTGACTTTAAGCTTTGGATTGTTCTGACAGGGTC  577

seq1  AGTTCACACTTTCCCTCAGTCTCAACCACACACCTGCCAGAAAACATCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACACTTTCCCTCAGTCTCAACCACACACCTGCCAGAAAACATCCT  627

seq1  GGAAGGATGCAGGTGTCCTTTTCTCTCTGTTGCTGTTAATTTCTTAAAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATGCAGGTGTCCTTTTCTCTCTGTTGCTGTTAATTTCTTAAAGA  677

seq1  TGCCCATGTTTTTGTTGTTGTTCTGCTCTCACTGTGAGTCACACTGATTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATGTTTTTGTTGTTGTTCTGCTCTCACTGTGAGTCACACTGATTA  727

seq1  TTTTCACAGGAGCTGCACTTCCATCAAGGTTTAAATTCCACTGGATCTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGGAGCTGCACTTCCATCAAGGTTTAAATTCCACTGGATCTTG  777

seq1  AGACTAAGTAAGAATAAAAAATAAAAACAAGACGAAAAATGTCTAAGTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAGTAAGAATAAAAAATAAAAACAAGACGAAAAATGTCTAAGTAC  827

seq1  CCATTCTAGCAATGGATAAGTGTCCAAAATACCGAAAGGAAATCTTTCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTAGCAATGGATAAGTGTCCAAAATACCGAAAGGAAATCTTTCAG  877

seq1  AGATTTGTAGACTGAGCCTCCTGTTATATCCACAGACCTCAGCATATTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTAGACTGAGCCTCCTGTTATATCCACAGACCTCAGCATATTAG  927

seq1  CATTTTTTCTAGCTCATGTATTAGAGTGATGATCACAACATACAATAAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTCTAGCTCATGTATTAGAGTGATGATCACAACATACAATAAGC  977

seq1  TGAAAACCTACATCTTTTGGAAGAGTTATTCTTTCTGAACTCTTTTTTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCTACATCTTTTGGAAGAGTTATTCTTTCTGAACTCTTTTTTTT  1027

seq1  TTTTTTTTACAAATTCTTCAGAGTATGCCGGATCCAAGATGTGTGTCAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTACAAATTCTTCAGAGTATGCCGGATCCAAGATGTGTGTCAGT  1077

seq1  GAGAGATATCAAGTTTACCAGATGTAATCTGTTTATCTATTCCGTTTCTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATATCAAGTTTACCAGATGTAATCTGTTTATCTATTCCGTTTCTT  1127

seq1  TATCTCATATTTAGAATTC  1167
      |||||||||||||||||||
seq2  TATCTCATATTTAGAATTC  1146

seq1: chr3_155400049_155401132
seq2: B6Ng01-131O17.g_70_1141

seq1  GAATTCCCAAGAGAGCATGTCCATAATCTTTTGTCTAATAATTCAGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGAGAGCATGTCCATAATCTTTTGTCTAATAATTCAGGGCA  50

seq1  AACAGTGCACAGGTCACAGCAAGGATGAGACTGAATGAGAGAACATTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGCACAGGTCACAGCAAGGATGAGACTGAATGAGAGAACATTTGG  100

seq1  GAAAATTTAAGAGAATGTAGAGTTTGTTGAAGACATACTTCAAAAGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTAAGAGAATGTAGAGTTTGTTGAAGACATACTTCAAAAGAGTT  150

seq1  CTTCCTTTGGTAAAAATTGTTTAGAGTATTCATCAATAAACTCAGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTGGTAAAAATTGTTTAGAGTATTCATCAATAAACTCAGAGAAA  200

seq1  AAATTGCTCTGTCTATGTTGCTGAACCAAAAGAAGGTCTGCCAGAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTCTGTCTATGTTGCTGAACCAAAAGAAGGTCTGCCAGAGAGGA  250

seq1  AACAATGCATTGACTCCACACACTCACTTTTTAGTAGAGAAGAGACATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGCATTGACTCCACACACTCACTTTTTAGTAGAGAAGAGACATTA  300

seq1  GTCTGCATTATGGTGATGTGAGACCTAAATGAATTTCATTTTGTGGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATTATGGTGATGTGAGACCTAAATGAATTTCATTTTGTGGACAA  350

seq1  GATTAGAAGAGAGTAATGTAATTTGAAAACATACATTACTTATGTGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAAGAGAGTAATGTAATTTGAAAACATACATTACTTATGTGAACT  400

seq1  TTTATAATAAAATGCTGTCAGTATTTCCAGAAGATGAGATGTTTCTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATAAAATGCTGTCAGTATTTCCAGAAGATGAGATGTTTCTTTGC  450

seq1  TTTTAGGTAATTAACTAGCAGAGTGAATATAAGAGTGAATATAAGTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTAATTAACTAGCAGAGTGAATATAAGAGTGAATATAAGTCCTT  500

seq1  TTAAGTCTTATTTTGTGTTGTCAAATCAAGGTAATTTAAATTCAACCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTTATTTTGTGTTGTCAAATCAAGGTAATTTAAATTCAACCACT  550

seq1  ATATATGCACCTCTATTTAAAGTAGGTATTCATACAAATCATGATTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCACCTCTATTTAAAGTAGGTATTCATACAAATCATGATTTGCA  600

seq1  AAACATGAAAGTATGAATGATAAACGGGACTTCAGGACAGCAGAGACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAAAGTATGAATGATAAACGGGACTTCAGGACAGCAGAGACTAA  650

seq1  CATCACATTCACTGGTGTCTATCCCCTTTAAAAAATCAAATTCCATTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATTCACTGGTGTCTATCCCCTTTAAAAAATCAAATTCCATTAAA  700

seq1  ATTTGAAAAGAAATAAAATCCTGATTGGATTCTCTTTTCATCCATAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAAGAAATAAAATCCTGATTGGATTCTCTTTTCATCCATAACAT  750

seq1  ATACAATTCATCTATTTAAATGCAGTCATTTTCCTGTGGTTTTTGGCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTCATCTATTTAAATGCAGTCATTTTCCTGTGGTTTTTGGCCCC  800

seq1  ACCACCAATCTCCCCACTAATGCTGTATTTCATACAGCAAATATTTTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAATCTCCCCACTAATGCTGTATTTCATACAGCAAATATTTTACT  850

seq1  AGTCAAACCAATATGGATATTCCTCTCCCTTCAGATGACTGCCCATTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAACCAATATGGATATTCCTCTCCCTTCAGATGACTGCCCATTAAT  900

seq1  CTCTGAATGCTGAAGTGCTTTGACGTAAATATAATAAAACTTCTCTTCAT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTCTGAATGCTGAAGTGCTTTGACGTAAATATAAT-AAACTTCTCTTCAT  949

seq1  TTTTCTTGTAGCCTTCATAATAAAATGAATGTCTCTTGCTAGGTCCAATT  1000
      ||||||||||||||||||||| ||||| |||||||||||||||||||| |
seq2  TTTTCTTGTAGCCTTCATAAT-AAATGGATGTCTCTTGCTAGGTCCAA-T  997

seq1  CCAATTTAATATCAAAGTAGAATGATG-TCCCTCTTAACAATGCTACCCT  1049
      |||  || ||| | ||||||||||||| ||||||||||| ||||||||||
seq2  CCA--TTTATA-CCAAGTAGAATGATGTTCCCTCTTAAC-ATGCTACCCT  1043

seq1  GAGTTCTGTGAGCCAACTAATTTCCTAAGTTATTT  1084
      ||| || |||||||||||||||||     ||||||
seq2  GAG-TCCGTGAGCCAACTAATTTC-----TTATTT  1072