BAC Information

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BAC

Clone NameB6Ng01-132D01
Chromosome3 (Build37)1 (Build37)
Map Location 41,059,525 - 41,059,737185,613,179 - 185,613,699
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132D01.bB6Ng01-132D01.g
ACCDH933058DH933059
length952521
definitionDH933058|Mus musculus domesticus DNA, BAC clone: B6Ng01-132D01, 5' end.DH933059|Mus musculus domesticus DNA, BAC clone: B6Ng01-132D01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,525 - 41,059,737)(185,613,179 - 185,613,699)
sequence
gaattctttgtttagctctgagccccattttttaatggggctattttctg
aagttcaccttcttgagttctttatatatattggatattagtcccctatc
tgatttcggagtggtaaagaccctttcccaatctgttggtggcttttttg
tcttatggacagtgtttttttttattttttttatttttttattttttttt
gccttacagaagcgttgcaattttatgaggtcccatttgtagatagtata
tataagtaaccctaaaaattccaccagagaactcctaaacctgataaaca
gcttcagcgaagtaactggatataaaattaactcgaacaagtcaatggcc
tttctctacacaaaggataaacaggctgagaaagaaattagggaaacaac
acccttctcaatagtcacaaataatataaaataccttggtgtgactctaa
ttaaggaagtgaaagatctgtacgataagaacttcaagtctctgaagaaa
gaaatcaaagaagatctcagaagatggaaagatctcccatgctcatggat
tggcaggatcaatatagtaaaaatggctatcttgtcaaaagcaatctaca
gattcaatgcaatccccatcataattccaactcaattcttcaatgaatta
gaaatggcaatttgcaaattcatctggaaaaacaaaaaaacctaggatag
caaaaactcttctcaatgataaaagaacctctggtggaatcaccgtgcct
gacctaaagctgtactacagagcaattgtgataaaaactgcatggtactg
gtatagcgacagacaagtagaccaatggaatagaattgaagactcagaaa
tgaacccacacacctatggtcacttgatctttgacaagggagctaatacc
atccagtggaaaaaaagacagcattttcaataaatggtgctggcacaact
gg
gaattcagatatggttcagtgagataaataaatatgttattaaataccag
gatatattagcatgtagttttcaggcacaggtgggtttaggttgttacaa
atccacatttaaaagccactgttcgctgagtatttactgtgttgttaata
aaactgcaaagttacatgtctttaatatatttaccatctcttcctattct
ttacttcaaggataatacaattgtatgacagatgtagaaactgaagcata
gaaaagttaaagaacttgcactgagacttgtaagtagtgacttgattcaa
aaattgacctcatggtatctctctagactccatgactgtgcatggatggg
ttcttttgctctatgcatgtaaaattgatgcccaaagccctacattaacg
cagtgtgaattgggaatattcaatcatccagacatgctccctctttactt
ctgtaggatatatatatatatatatatatatatatatatatatatatata
tatatacatagagagatagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059525_41059737
seq2: B6Ng01-132D01.b_48_286 (reverse)

seq1  ACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGC----------  40
      |||||||||||||||| ||| ||||| ||||||| |||||          
seq2  ACAAATGGGACCTCATAAAATTGCAACGCTTCTGTAAGGCAAAAAAAAAT  50

seq1  --------------------AAAAGACACCGTCAATAAGAC-AAAAAGGC  69
                          |||| |||| ||| ||||||| |||||| |
seq2  AAAAAAATAAAAAAAATAAAAAAAAACACTGTCCATAAGACAAAAAAGCC  100

seq1  ACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGAC  119
      ||||||||||||||||||| ||||||||  ||| ||||||||||||||||
seq2  ACCAACAGATTGGGAAAGGGTCTTTACCACTCCGAAATCAGATAGGGGAC  150

seq1  TAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCA  169
      ||||||||||||||||| ||||||||||||||||| | | ||||     |
seq2  TAATATCCAATATATATAAAGAACTCAAGAAGGTGAACTTCAGA-----A  195

seq1  AATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  213
      |||| |||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  239

seq1: chr1_185613179_185613699
seq2: B6Ng01-132D01.g_67_587 (reverse)

seq1  CTCTCTCTCTCTCTGTATATATATATATATATATATATATATATATATAT  50
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTCTCTATGTATATATATATATATATATATATATATATATATAT  50

seq1  ATATATATATATATCCTACAGAAGTAAAGAGGGAGCATGTCTGGATGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATCCTACAGAAGTAAAGAGGGAGCATGTCTGGATGATT  100

seq1  GAATATTCCCAATTCACACTGCGTTAATGTAGGGCTTTGGGCATCAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTCCCAATTCACACTGCGTTAATGTAGGGCTTTGGGCATCAATTT  150

seq1  TACATGCATAGAGCAAAAGAACCCATCCATGCACAGTCATGGAGTCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCATAGAGCAAAAGAACCCATCCATGCACAGTCATGGAGTCTAGA  200

seq1  GAGATACCATGAGGTCAATTTTTGAATCAAGTCACTACTTACAAGTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACCATGAGGTCAATTTTTGAATCAAGTCACTACTTACAAGTCTCA  250

seq1  GTGCAAGTTCTTTAACTTTTCTATGCTTCAGTTTCTACATCTGTCATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGTTCTTTAACTTTTCTATGCTTCAGTTTCTACATCTGTCATACA  300

seq1  ATTGTATTATCCTTGAAGTAAAGAATAGGAAGAGATGGTAAATATATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTATCCTTGAAGTAAAGAATAGGAAGAGATGGTAAATATATTAA  350

seq1  AGACATGTAACTTTGCAGTTTTATTAACAACACAGTAAATACTCAGCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGTAACTTTGCAGTTTTATTAACAACACAGTAAATACTCAGCGAA  400

seq1  CAGTGGCTTTTAAATGTGGATTTGTAACAACCTAAACCCACCTGTGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTTTTAAATGTGGATTTGTAACAACCTAAACCCACCTGTGCCTG  450

seq1  AAAACTACATGCTAATATATCCTGGTATTTAATAACATATTTATTTATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACATGCTAATATATCCTGGTATTTAATAACATATTTATTTATCT  500

seq1  CACTGAACCATATCTGAATTC  521
      |||||||||||||||||||||
seq2  CACTGAACCATATCTGAATTC  521