BAC Information

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BAC

Clone NameB6Ng01-132I03
Chromosome3 (Build37)
Map Location 81,940,655 - 81,941,410
singlet/doubletsinglet
Overlap geneGucy1a3
Upstream genePdgfc, LOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132I03.bB6Ng01-132I03.g
ACCDH933292DH933293
length756949
definitionDH933292|Mus musculus domesticus DNA, BAC clone: B6Ng01-132I03, 5' end.DH933293|Mus musculus domesticus DNA, BAC clone: B6Ng01-132I03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagccgaggaattttactactacgaagacacagcatcagacaag
gcttgaatgtttgcctcccaccacttagtccttgcatgatggtatgcatg
cttagggctctttaggatccttcatgaatgaaagctttgctgtctatgac
catttcttacagcctcgtaagaggactgaaacagaatgtaaagataccag
acaatattatgattaattgccaaattaaatttagaactgtgaagactaga
aatgatttatgaatgtgtaatcaaaactgatatgtacaccttaacaccca
tcccccaactttataaaagcatggtatagttcaacattacctaatgaagc
aaatactctgcctagcatcctggtcttgtgatctaatcccttcttatctt
gagtgccttgcacaaacgtactccgagataatctcatggctccaagcctc
acaaatcaccccacacatttcactgtgcgcttatgagacattcagcactt
ctccttaagtgtctgtgcagaaaatgagggcttaggctaacatctcctac
ccaaatcatcctaatgaggaaaagacaattccaaatacaattataatata
gtaagagaacatacagggaaagtacagggtgttgtgaaaatgtgtaacaa
gacatgcaattcagaattggacaacaggaaagctgaaactgtaaagcaga
aaacgatgtggctcttccaaaattagaggaaaaagaagaaaggaggagga
ggagga
gaattctttcccaacctcctgcttttggttttgttttgtttttgcttttc
aagctcttaagatgtatcatttattaatttgtttgagttctctctaattt
taaaaatgtaggtgcttaatatttctgtgattttgctgactttgtagtgt
ttgttgtttgtttttagctctgctttttttcctgtagcctcttagtttgc
ttttcttttcttcagtctgaagagtctctttcagtcgtctctgtagggat
tcattggtttggtggtatttataaaatcttatttctccttccagatattt
ttgatatgcatagttgtcttggtatctgtcatttttctgggttttttttt
tgtatctgtcatttttcaaaacttgaggttctgaaaatagagtttcaact
gtatagtatgagggaattttttttctgatgttgtctattttgtgtgtgtg
tgtgtgtgtgtgtgctgggtacctcttgtgtgcagatggccatctctttc
cttatgttcatgttttactctatgacttaactttctagatctgactgggc
ctttttcttctgtgtttacagttgattattgtggtgtctcaaagatcttg
cttattctcctcatgagttttttataaaaatgtcattttctttgattcaa
tgattgaactcctccattttttttcttcagtcactgatattctgtctgtc
tctcatgcattatcaattctgctggggaagctatccattgggcttcttaa
tttaaactcattgaaaattgcactgccagctccattcttaacttatgttc
ccttcatttttctctatatttattgctttccaattttcatgttctgatta
tcttcctaatttatcagctgtttgtgttttcttcccctccagcatgaatt
tatttttgtctccttttaagtccattcaagaattttctctcttctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81940655_81941410
seq2: B6Ng01-132I03.b_48_803

seq1  GAATTCAAGCCGAGGAATTTTACTACTACGAAGACACAGCATCAGACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCGAGGAATTTTACTACTACGAAGACACAGCATCAGACAAG  50

seq1  GCTTGAATGTTTGCCTCCCACCACTTAGTCCTTGCATGATGGTATGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAATGTTTGCCTCCCACCACTTAGTCCTTGCATGATGGTATGCATG  100

seq1  CTTAGGGCTCTTTAGGATCCTTCATGAATGAAAGCTTTGCTGTCTATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGCTCTTTAGGATCCTTCATGAATGAAAGCTTTGCTGTCTATGAC  150

seq1  CATTTCTTACAGCCTCGTAAGAGGACTGAAACAGAATGTAAAGATACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTACAGCCTCGTAAGAGGACTGAAACAGAATGTAAAGATACCAG  200

seq1  ACAATATTATGATTAATTGCCAAATTAAATTTAGAACTGTGAAGACTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTATGATTAATTGCCAAATTAAATTTAGAACTGTGAAGACTAGA  250

seq1  AATGATTTATGAATGTGTAATCAAAACTGATATGTACACCTTAACACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTATGAATGTGTAATCAAAACTGATATGTACACCTTAACACCCA  300

seq1  TCCCCCAACTTTATAAAAGCATGGTATAGTTCAACATTACCTAATGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAACTTTATAAAAGCATGGTATAGTTCAACATTACCTAATGAAGC  350

seq1  AAATACTCTGCCTAGCATCCTGGTCTTGTGATCTAATCCCTTCTTATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTCTGCCTAGCATCCTGGTCTTGTGATCTAATCCCTTCTTATCTT  400

seq1  GAGTGCCTTGCACAAACGTACTCCGAGATAATCTCATGGCTCCAAGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCTTGCACAAACGTACTCCGAGATAATCTCATGGCTCCAAGCCTC  450

seq1  ACAAATCACCCCACACATTTCACTGTGCGCTTATGAGACATTCAGCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCACCCCACACATTTCACTGTGCGCTTATGAGACATTCAGCACTT  500

seq1  CTCCTTAAGTGTCTGTGCAGAAAATGAGGGCTTAGGCTAACATCTCCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAAGTGTCTGTGCAGAAAATGAGGGCTTAGGCTAACATCTCCTAC  550

seq1  CCAAATCATCCTAATGAGGAAAAGACAATTCCAAATACAATTATAATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCATCCTAATGAGGAAAAGACAATTCCAAATACAATTATAATATA  600

seq1  GTAAGAGAACATACAGGGAAAGTACAGGGTGTTGTGAAAATGTGTAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGAACATACAGGGAAAGTACAGGGTGTTGTGAAAATGTGTAACAA  650

seq1  GACATGCAATTCAGAATTGGACAACAGGAAAGCTGAAACTGTAAAGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCAATTCAGAATTGGACAACAGGAAAGCTGAAACTGTAAAGCAGA  700

seq1  AAACGATGTGGCTCTTCCAAAATTAGAGGAAAAAGAAGAAAGGAGGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGATGTGGCTCTTCCAAAATTAGAGGAAAAAGAAGAAAGGAGGAGGA  750

seq1  GGAGGA  756
      ||||||
seq2  GGAGGA  756