BAC Information

Click to search

BAC

Clone NameB6Ng01-132O07
Chromosome3 (Build37)
Map Location 18,828,950 - 18,830,098
singlet/doubletsinglet
Overlap genenone
Upstream geneCypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132O07.bB6Ng01-132O07.g
ACCDH933583DH933584
length1941,128
definitionDH933583|Mus musculus domesticus DNA, BAC clone: B6Ng01-132O07, 5' end.DH933584|Mus musculus domesticus DNA, BAC clone: B6Ng01-132O07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ttctgacaaatggagattctccacagatacttaaaagaacacccaagtta
cactcatacaagaatttatcaaggcctaggaaataggggggaggggaggt
tgtggtattgcattaatcatgagaaggtttgctggagcagaacccccagg
tgctagctttcacaaggctccaaggagtagctcatattctttac
gaattccagggtttttaagcactcctatttttttttttttactcacctca
tctatcaaatgaatttctcatccacttatacattcattaactccacgtag
ctaaacctttagaagacaattaaagcttccttgtatgttatataggcaat
atttgtatggcccaagggattttgtctctggttgtaagaataaggaggga
agagatagaagcaagggaggtgtggatttatcatgtcatgtttgagatta
agctagggtatatattcacacacacatatacgtgaatcagtgaacatgag
tttgaaaagataacttcagcattctagttctctctaggagtttcgtcact
gagcagaagagaggtttcatttgtgttgatttaaaaatttgataaaatct
attgtgatttttgttaaggcaagtcactgatttttgctatgcctatttta
aatattttcttacataacaaaattgtgaatattccttcaatagtatttct
gtgagaagaaataagtaagcactgttaataaggctcacaaggtaaagaac
tactcattgagcaagtgcttgacctctgctctgtgatccatatgagatct
taggcagaggtcacatgccctattcatagcaaggcacaagagccagtctg
cttcatttgcgaatatgtatctgggaagtgactatttaaaaagaattatc
gtcagtaattcagccattgtagttttatttttgctgtagctcagggtaag
gcaggagttacagtgcatgctactataagccaagcatgtggatagtattg
tcttggtatggtgtgcattaaaattcacatcttgccattagcagcaactt
attctgcatcatttcattccttaggggatgggctgttccattcataatta
atttttaaaaccacatattcatcacatacaatttgccacataggaaagca
tcttactatcttcatccgtctcatctgaatatctggagccttaaaaagca
gtaagttgcctccacttctcattgcattctagtgtccccgcaatgtcaaa
caagaaaattccacattctgtagcaatgtcagtacagcagagcatcagct
tgtttcagcgtgtctgggatctaatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18828950_18830098
seq2: B6Ng01-132O07.g_69_1196 (reverse)

seq1  TTGATTTTGTGATCCCAAAGGGACA-GCTGAAAACAGCTGATGCCTCTGC  49
      ||||||    |||||||    |||| |||||||  |||||||| ||||||
seq2  TTGATT---AGATCCCA----GACACGCTGAAACAAGCTGATG-CTCTGC  42

seq1  TGGTACTGACATTGCTACAGAATGTGGGAATTTTTCTGGTTTGACATTTG  99
      | |||||||||||||||||||||||||  | |||||| |||||||| |||
seq2  T-GTACTGACATTGCTACAGAATGTGG--AATTTTCTTGTTTGACA-TTG  88

seq1  CGGGGGACACTAGAAATTGCATTGAGAAGTGGGGGCACCTTACTTGCTTT  149
      | |||||||||||||  |||| |||||||||| |||| ||||| ||||||
seq2  C-GGGGACACTAGAA--TGCAATGAGAAGTGGAGGCAACTTAC-TGCTTT  134

seq1  TTTAAAGGCTCAAGGATATTCAGATGAGACGGATGAAAGGATAGTAAGAT  199
      ||  ||||||| | |||||||||||||||||||||||  |||||||||||
seq2  TT--AAGGCTCCA-GATATTCAGATGAGACGGATGAA--GATAGTAAGAT  179

seq1  GCTTTCCTATGTGGCAAATTGTATGTGATGAATATGTGGTTTTAAAAATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTATGTGGCAAATTGTATGTGATGAATATGTGGTTTTAAAAATT  229

seq1  AATTATGAATGGAACAGCCCATCCCCTAAGGAATTGAAATGATGCAGAAT  299
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATTATGAATGGAACAGCCCATCCCCTAAGGAA-TGAAATGATGCAGAAT  278

seq1  AAGTTGCTGCTAATGGCAAGATGTGAATTTTAATGCACACCATACCAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCTGCTAATGGCAAGATGTGAATTTTAATGCACACCATACCAAGA  328

seq1  CAATACTATCCACATGCTTGGCTTATAGTAGCATGCACTGTAACTCCTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTATCCACATGCTTGGCTTATAGTAGCATGCACTGTAACTCCTGC  378

seq1  CTTACCCTGAGCTACAGCAAAAATAAAACTACAATGGCTGAATTACTGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCTGAGCTACAGCAAAAATAAAACTACAATGGCTGAATTACTGAC  428

seq1  GATAATTCTTTTTAAATAGTCACTTCCCAGATACATATTCGCAAATGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTCTTTTTAAATAGTCACTTCCCAGATACATATTCGCAAATGAAG  478

seq1  CAGACTGGCTCTTGTGCCTTGCTATGAATAGGGCATGTGACCTCTGCCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGCTCTTGTGCCTTGCTATGAATAGGGCATGTGACCTCTGCCTA  528

seq1  AGATCTCATATGGATCACAGAGCAGAGGTCAAGCACTTGCTCAATGAGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCATATGGATCACAGAGCAGAGGTCAAGCACTTGCTCAATGAGTA  578

seq1  GTTCTTTACCTTGTGAGCCTTATTAACAGTGCTTACTTATTTCTTCTCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTACCTTGTGAGCCTTATTAACAGTGCTTACTTATTTCTTCTCAC  628

seq1  AGAAATACTATTGAAGGAATATTCACAATTTTGTTATGTAAGAAAATATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACTATTGAAGGAATATTCACAATTTTGTTATGTAAGAAAATATT  678

seq1  TAAAATAGGCATAGCAAAAATCAGTGACTTGCCTTAACAAAAATCACAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGGCATAGCAAAAATCAGTGACTTGCCTTAACAAAAATCACAAT  728

seq1  AGATTTTATCAAATTTTTAAATCAACACAAATGAAACCTCTCTTCTGCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTATCAAATTTTTAAATCAACACAAATGAAACCTCTCTTCTGCTC  778

seq1  AGTGACGAAACTCCTAGAGAGAACTAGAATGCTGAAGTTATCTTTTCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACGAAACTCCTAGAGAGAACTAGAATGCTGAAGTTATCTTTTCAAA  828

seq1  CTCATGTTCACTGATTCACGTATATGTGTGTGTGAATATATACCCTAGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTCACTGATTCACGTATATGTGTGTGTGAATATATACCCTAGCT  878

seq1  TAATCTCAAACATGACATGATAAATCCACACCTCCCTTGCTTCTATCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAAACATGACATGATAAATCCACACCTCCCTTGCTTCTATCTCT  928

seq1  TCCCTCCTTATTCTTACAACCAGAGACAAAATCCCTTGGGCCATACAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTTATTCTTACAACCAGAGACAAAATCCCTTGGGCCATACAAAT  978

seq1  ATTGCCTATATAACATACAAGGAAGCTTTAATTGTCTTCTAAAGGTTTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTATATAACATACAAGGAAGCTTTAATTGTCTTCTAAAGGTTTAG  1028

seq1  CTACGTGGAGTTAATGAATGTATAAGTGGATGAGAAATTCATTTGATAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGTGGAGTTAATGAATGTATAAGTGGATGAGAAATTCATTTGATAGA  1078

seq1  TGAGGTGAGTAAAAAAAAAAAAATAGGAGTGCTTAAAAACCCTGGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGAGTAAAAAAAAAAAAATAGGAGTGCTTAAAAACCCTGGAATTC  1128