BAC Information

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BAC

Clone NameB6Ng01-133A17
Chromosome3 (Build37)
Map Location 151,250,146 - 151,459,227
singlet/doubletdoublet
Overlap geneIfi44, H28
Upstream geneEltd1
Downstream genePtgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133A17.bB6Ng01-133A17.g
ACCDH933699DH933700
length1,171965
definitionDH933699|Mus musculus domesticus DNA, BAC clone: B6Ng01-133A17, 5' end.DH933700|Mus musculus domesticus DNA, BAC clone: B6Ng01-133A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,250,146 - 151,251,174)(151,458,244 - 151,459,227)
sequence
gaattcaagaaaagcttagggacagctgtggtggtacacactgtcaatcc
tagcacctgggaggcagaggcagggggatctctgagtttgaggccagcct
cttctacatagcaagttccgggatggccaagcttcgaaggaaaccatcaa
aaaccagaaagcccatgcaggtattgttaaatgaagggcgcatgttccac
cccagcaagcaagcagcagagcatgcagattcagctatgccattctggcc
ttacagtcaaggatacaagaaagatgtcatagaatgtccttctgtgacta
aagaaagccattgagaccagatgtgtgtcaggggtgtctgttgagttttg
gacttttgttgtgtattgtaatgctaagtgtgccccccccaagacctggt
tgccctagagaggagagagtctgcatgcagacccaagtgaccttgccccc
caagttatttctgatcggtaaataatgatgctggcagccaatagctgggc
agaagagacataggcagggttagaattcctgggcttggggtcatgctgat
aatggactaaacctctgaaactataaaccagccctatttaaatgcttttc
ctgaagtgttgcatggttgtggtctcttcacagcaatagaatgctgtcta
attcagtgtgaataggttgttcatggagagatgcttaggacatgatgtgc
tctcatggtacactctgacttcccagatcaatccattcacagttacatgg
gtggagaaagtatgaaatgaacttataagtcaaaagtcatgtagagtcaa
gagcccttcagtggataccaacttctatgccccttgagacttgtatgtga
aatttgaactatctcccacaatctttgcattgaacacttggtttcccaga
cagtggtgctattttaggagatggtaaattctttagaggtgaagatctac
ctgaaagtaagtcactggtggagaacttttgaagtttggagaacagtctc
tgtcccttctactttgcctctagaccccattggtaagtagcctctgacat
gtatgtgttctgatgctgtgggctgcatcaccctagctagaagaatcgat
tcagagttattgaccctctggaacctgacctaaaccagccatcctcactt
ggaatatagctcatgtatgta
gaattccctatcttcttcatcttgcaaggcaaaaattacaggggagccac
catggctgccagggcctttaaatgagatctgaggaatcctaatcctacta
acaaaagtgattacaatacatgacatctggagggtcacaattcagtttct
agcaacagtacagacagtgacattaatatgaagctacagtgagtgacaca
cagggactgaatctcaaatgctgacatgtatcacgtgggcatgggtgttt
tataaaatcagattgctgtgaccagctaccctgactgatttggtaagtct
ggggttgtaggaggggagtatatttgcaatgggatttcgtatgagggcat
caggcaattctagtgggaagagcacacatggagaggtgctgacctaaacc
cacgtgagcatgtctttaaccagccatgggttgaaaccactgtgcacggg
ggagaaataatctatgaaaaagaggtgaattgaatcaccactttcatact
ggccatccatacctagtctaagaattccccaacaggagaccggattgagg
gagagtctaaaacccaacagaacacagacaagaaaatgtttaaaaacaac
cccaaaggcagcgagatgaagggtagctggtctctggtctctaactagct
tcagaaacattgttcagaaaacagacacaatttctccacaagtctcttag
aatattgtttggagtttgattcttcagctcagcttttctttttgtgtctc
tctccacttcctttcttcttgaaagaatccaaggccagtgggattgattt
tatgttttcctctctactattcaaatgttataatatttctattcttcttt
atctgatattttctctctgtggattccagtggtttaaaatatttctgacg
tagttaaaaaaacaaacaaacaaacacttaatcatgttggctttcatgtg
acatgagtattccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_151250146_151251174
seq2: B6Ng01-133A17.b_202_1219

seq1  CCAGAAAGCCCATGCAGGTATTGTTAAATGAAGGGCGCATGTTCCACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGCCCATGCAGGTATTGTTAAATGAAGGGCGCATGTTCCACCCC  50

seq1  AGCAAGCAAGCAGCAGAGCATGCAGATTCAGCTATGCCATTCTGGCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAAGCAGCAGAGCATGCAGATTCAGCTATGCCATTCTGGCCTTA  100

seq1  CAGTCAAGGATACAAGAAAGATGTCATAGAATGTCCTTCTGTGACTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAGGATACAAGAAAGATGTCATAGAATGTCCTTCTGTGACTAAAG  150

seq1  AAAGCCATTGAGACCAGATGTGTGTCAGGGGTGTCTGTTGAGTTTTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATTGAGACCAGATGTGTGTCAGGGGTGTCTGTTGAGTTTTGGAC  200

seq1  TTTTGTTGTGTATTGTAATGCTAAGTGTGCCCCCCCCAAGACCTGGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTGTATTGTAATGCTAAGTGTGCCCCCCCCAAGACCTGGTTGC  250

seq1  CCTAGAGAGGAGAGAGTCTGCATGCAGACCCAAGTGACCTTGCCCCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGAGGAGAGAGTCTGCATGCAGACCCAAGTGACCTTGCCCCCCAA  300

seq1  GTTATTTCTGATCGGTAAATAATGATGCTGGCAGCCAATAGCTGGGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCTGATCGGTAAATAATGATGCTGGCAGCCAATAGCTGGGCAGA  350

seq1  AGAGACATAGGCAGGGTTAGAATTCCTGGGCTTGGGGTCATGCTGATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATAGGCAGGGTTAGAATTCCTGGGCTTGGGGTCATGCTGATAAT  400

seq1  GGACTAAACCTCTGAAACTATAAACCAGCCCTATTTAAATGCTTTTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAACCTCTGAAACTATAAACCAGCCCTATTTAAATGCTTTTCCTG  450

seq1  AAGTGTTGCATGGTTGTGGTCTCTTCACAGCAATAGAATGCTGTCTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTGCATGGTTGTGGTCTCTTCACAGCAATAGAATGCTGTCTAATT  500

seq1  CAGTGTGAATAGGTTGTTCATGGAGAGATGCTTAGGACATGATGTGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGAATAGGTTGTTCATGGAGAGATGCTTAGGACATGATGTGCTCT  550

seq1  CATGGTACACTCTGACTTCCCAGATCAATCCATTCACAGTTACATGGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTACACTCTGACTTCCCAGATCAATCCATTCACAGTTACATGGGTG  600

seq1  GAGAAAGTATGAAATGAACTTATAAGTCAAAAGTCATGTAGAGTCAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTATGAAATGAACTTATAAGTCAAAAGTCATGTAGAGTCAAGAG  650

seq1  CCCTTCAGTGGATACCAACTTCTATGCCCCTTGAGACTTGTATGTGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAGTGGATACCAACTTCTATGCCCCTTGAGACTTGTATGTGAAAT  700

seq1  TTGAACTATCTCCCACAATCTTTGCATTGAACACTTGG-TTCCCAGACAG  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGAACTATCTCCCACAATCTTTGCATTGAACACTTGGTTTCCCAGACAG  750

seq1  TGGTGCTATTTTAGGAGATGGTAAATTCTTTAAGAGGTGAAGATCTACCT  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGTGCTATTTTAGGAGATGGTAAATTCTTT-AGAGGTGAAGATCTACCT  799

seq1  GAAAGTAAGTCACTGGTGGAGAACTTTTGAAGGTTTTGGAGAACAGGTCT  849
      ||||||||||||||||||||||||||||||||  ||||||||||| ||||
seq2  GAAAGTAAGTCACTGGTGGAGAACTTTTGAAG--TTTGGAGAACA-GTCT  846

seq1  CTGTCCCCTTCTACTTTGCCTCTAGACCCCCATTGGGTAAGTAGCCTCTG  899
      |||| ||||||||||||||||||||| ||||||| |||||||||||||||
seq2  CTGT-CCCTTCTACTTTGCCTCTAGA-CCCCATT-GGTAAGTAGCCTCTG  893

seq1  ACATGTATGTGTTCCTGATGCTGTGGGCTGGCATCACCCTAGGCTAGAAG  949
      ||||||||||||| ||||||||||||||| ||||||||||| ||||||||
seq2  ACATGTATGTGTT-CTGATGCTGTGGGCT-GCATCACCCTA-GCTAGAAG  940

seq1  AAATCGATCCAAGAGTTA-TGACCCTCT-GAAACTGAGCTAAAACCAGCC  997
       ||||||| | ||||||| ||||||||| ||| |||| || ||||||| |
seq2  -AATCGATTC-AGAGTTATTGACCCTCTGGAACCTGACCT-AAACCAG-C  986

seq1  CATCCTCACTTGATATTTAGTCTATGTATGTA  1029
      ||||||||||||  || |||   |||||||||
seq2  CATCCTCACTTGGAATATAGCTCATGTATGTA  1018

seq1: chr3_151458244_151459227
seq2: B6Ng01-133A17.g_65_1029 (reverse)

seq1  TTGGAAATACTCAGTGCTCATCCAGAAAGCCAACATGGATTAAAGTGTTT  50
      |||| ||||||||   | |||   |||||||||||| |||| ||||| ||
seq2  TTGG-AATACTCATGTCACAT---GAAAGCCAACAT-GATT-AAGTG-TT  43

seq1  TGTTTTGTTTTGTTTTTTTAAACTACAGTCAGAAGTTATTTTAAAACCAA  100
      |||||   ||||||||||| |||||| |||||||  |||||||||  | |
seq2  TGTTT--GTTTGTTTTTTT-AACTAC-GTCAGAA-ATATTTTAAA--CCA  86

seq1  CTGGACTCAAACAAGAGTGGAAAATATCAAGATCAAAGAAGAATAGAAAT  150
      ||||| || |   |||   ||||||||| |||| ||||||||||||||||
seq2  CTGGAATCCACAGAGA---GAAAATATC-AGAT-AAAGAAGAATAGAAAT  131

seq1  ATTATAAACATTGGAATAGTAGAGAGGAAAACATAAAATCAATCCAACTG  200
      ||||| |||||| |||||||||||||||||||||||||||||||| ||||
seq2  ATTAT-AACATTTGAATAGTAGAGAGGAAAACATAAAATCAATCCCACTG  180

seq1  GCCTTGGATTCTTTCAAGAAGAAAGG-AGTGGAGAGAGACACAAAAAGAA  249
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCCTTGGATTCTTTCAAGAAGAAAGGAAGTGGAGAGAGACACAAAAAGAA  230

seq1  AAGCTGAGCTGAAGAATCAAACTCCAAACAATATTCTAAGAGACTTGTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGCTGAAGAATCAAACTCCAAACAATATTCTAAGAGACTTGTGG  280

seq1  AGAAATTGTGTCTGTTTTCTGAACAATGTTTCTGAAGCTAGTTAGAGACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGTGTCTGTTTTCTGAACAATGTTTCTGAAGCTAGTTAGAGACC  330

seq1  AGAGACCAGCTACCCTTCATCTCGCTGCCTTTGGGGTTGTTTTTAAACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCAGCTACCCTTCATCTCGCTGCCTTTGGGGTTGTTTTTAAACAT  380

seq1  TTTCTTGTCTGTGTTCTTTCTTCACTTTT--TTTCTTATTCAATTTGCT-  446
      ||||||||||||||||  | ||   ||||    |||   |||||  | | 
seq2  TTTCTTGTCTGTGTTC--TGTTGGGTTTTAGACTCTCCCTCAATCCGGTC  428

seq1  TAGGGTTGGGGAAAACTTAGGCTAGGTATGGATGGCCAGTATGAAAGTGG  496
      |   |||||||||  ||||| |||||||||||||||||||||||||||||
seq2  TCCTGTTGGGGAATTCTTAGACTAGGTATGGATGGCCAGTATGAAAGTGG  478

seq1  TGATGAAATTTTGCATTTTTACAAAGCTTCTTTGTCCCTTGTGCATTTCA  546
      ||||  ||||   |  |||| || || || ||| ||||  |||||   ||
seq2  TGATTCAATTCACCTCTTTTTCATAGATTATTTCTCCCCCGTGCA---CA  525

seq1  --TGCCACAACACATGGCTGGTTAACCTCATGCTCACGTGGGTTTAGGTC  594
         |   |||| |||||||||||||   ||||||||||||||||||||||
seq2  GTGGTTTCAACCCATGGCTGGTTAAAGACATGCTCACGTGGGTTTAGGTC  575

seq1  AGCACCTCTCCAAGTGTGCTCTTCCCACTAGAATTGCCTGATGCCCTCAT  644
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGCACCTCTCCATGTGTGCTCTTCCCACTAGAATTGCCTGATGCCCTCAT  625

seq1  ACGAAATCCCATTGCAAATATACTCCCCTCCTACAACCCCAGACTTACCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAATCCCATTGCAAATATACTCCCCTCCTACAACCCCAGACTTACCA  675

seq1  AATCAGTCAGGGTAGCTGGTCACAGCAATCTGATTTTATAAAACACCCAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTCAGGGTAGCTGGTCACAGCAATCTGATTTTATAAAACACCCAT  725

seq1  GCCCACGTGATACATGTCAGCATTTGAGATTCAGTCCCTGTGTGTCACTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACGTGATACATGTCAGCATTTGAGATTCAGTCCCTGTGTGTCACTC  775

seq1  ACTGTAGCTTCATATTAATGTCACTGTCTGTACTGTTGCTAGAAACTGAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGCTTCATATTAATGTCACTGTCTGTACTGTTGCTAGAAACTGAA  825

seq1  TTGTGACCCTCCAGATGTCATGTATTGTAATCACTTTTGTTAGTAGGATT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACCCTCCAGATGTCATGTATTGTAATCACTTTTGTTAGTAGGATT  875

seq1  AGGATTCCTCAGATCTCATTTAAAGGCCCTGGCAGCCATGGTGGCTCCCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCCTCAGATCTCATTTAAAGGCCCTGGCAGCCATGGTGGCTCCCC  925

seq1  TGTAATTTTTGCCTTGCAAGATGAAGAAGATAGGGAATTC  984
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTTTGCCTTGCAAGATGAAGAAGATAGGGAATTC  965