BAC Information

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BAC

Clone NameB6Ng01-133D10
Chromosome3 (Build37)
Map Location 4,187,701 - 4,358,838
singlet/doubletdoublet
Overlap geneLOC667709
Upstream geneLOC667655, LOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167
Downstream geneLOC620283, Zfhx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133D10.bB6Ng01-133D10.g
ACCDH933818DH933819
length1,1631,051
definitionDH933818|Mus musculus domesticus DNA, BAC clone: B6Ng01-133D10, 5' end.DH933819|Mus musculus domesticus DNA, BAC clone: B6Ng01-133D10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,357,657 - 4,358,838)(4,187,701 - 4,188,572)
sequence
gaattctcagatatgcagcctagttgttgcaaggcttcaataagtgtgtt
tcagttttcttcatgcacttgggcttagtttctcagttggccccatcttt
gaaacacccagtgtgaatcatgttgactctgacagggggaaaagattttg
tactgatgtaaaggatctattcccatggtttactgagacacacccctcct
cccagaaggctctaggatttcagaaaacaaaagaaggaaaaagacagaat
gaagggacaaaaaaaaatcaagaatgaaatttcaagcagatctagcagag
ttcaggtgccctgtggaattacatgacacattgagccattaaggaaaatc
atacaaatgagtgtgagtaatcgctggacaatattatggcggagggaggg
gaagagcatgtataggatatgtgcataaaagtcacaaggctgggagctga
agaaaagaggcacacagcaatctgcctttactaggacaaatcgttactgc
tcatctcaaaatcgcttctcaggcctgtaaaatatctgggcttttaagtg
aagaggatatgttgttggtacttatgcattttctaaagggtaaggatgga
tgttctctttgaaggtcttaagaaaactttttaaataaaaacaaatccca
tttgcttttgatatattttttgtgaattaaatttatttggctgtcataag
ggaaataattaagagtagagatcacacccctttgtaataaagaaaaatta
agttaatacacagataaccttcaaataagtgccttgattttgtttatatt
cacataacataccaagtaaatgttcattacaggcaacaacaacaacaaat
ggagagaaccaacgtcaaacaccttgtttgcaccctgagttttagttagt
atttttagatcctcaaacatttttatccttgattttaaattgaactgcat
tagatatttatgagctacgaaaaatatataaactagaaggacttagcatc
ctctttaaatagtgggaatatcatgactgatagcctttagtcaacaacaa
ctagcaatcaaattatactgctgtcagttcgtgagccaattgagccatat
tgcataaaattaggagcagcacacatcccactgtcagatctacttcgaat
ggcggacgttaat

gaattctttcaccaacagctcaataaaaaatgtaagtcaattccagaact
agagctccatatggttataatacagttgtgactctttcccccattatttg
gcaatttgctttagattgcctttttaggaagtttctattgtattaggttt
ccgtgttacccatcatgtggctggtaattttaactgtctttttatgtttc
ctcccccaattttctctctcttctctttcttcacttaattctccaactta
agcactgtcccacccatccaatctcttgtattctctttgcataatgatat
ctatttcttctccctagtcccttatcctgtacctactcttggaggttgta
tgagttgtagcttggttattatggactgtacagctaatatcgatagataa
gtgaatatatttcatttttgccttttgaagtctttaatacctctttcaga
tttttcatatttctatgtttaacttaaaatttcaggatgtcatttattta
ctttttaagcattaagtaatatttgaatgttaaatgtaccatatttcttt
actcttctattgaggaacatctagattgtttccaattcctgtctatcatt
agtagaacagcagtgaacacagttttgttagtgtccctgtggtaggatga
agcatcctttgtatataggttcatgagtgttatagatggatcttgaggta
tatagattcccatcttcttaatcctgttttgttaggcatcatctgtcttt
ctttagtagattaaacactgcagttgctgtaggttgaagtcagacatgct
tgtgtctaattccaaataaacttcctgtgtatttctgtccctctgaactt
ctatgattagcaacactctctatgcttgtactatatgctgtgtggagaag
aattgagggtctccattaataaataccttgtctggctcaggaggaaagga
aggcctatgtctcagagccttgaatttcagggtgaggatacccagaggcc
cccaccactcgaaggaataggaggagggatgcaggaggattgtggggaag
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_4357657_4358838
seq2: B6Ng01-133D10.b_45_1207 (reverse)

seq1  ATTAACGTCGGCCTTTCTGAAGTAGATACTGACAGTGGTGATTGTTGCTG  50
      ||||||||| ||| ||| ||||||||| |||||||||| |||   |||||
seq2  ATTAACGTCCGCCATTC-GAAGTAGAT-CTGACAGTGG-GATGTGTGCTG  47

seq1  CTCCTGTATTTTTATGGCAATAT-GCTCAATCTGCTTCACGAACTGACAG  99
      ||||  || |||||| ||||||| ||||||| ||  ||||||||||||| 
seq2  CTCC--TAATTTTAT-GCAATATGGCTCAAT-TGGCTCACGAACTGACA-  92

seq1  GCAAGTTATAATTTGATTGCTAGTTGTTTGTTGACTAAAGGCTATCAGTT  149
      |||   |||||||||||||||||||| ||||||||||||||||||||| |
seq2  GCA--GTATAATTTGATTGCTAGTTG-TTGTTGACTAAAGGCTATCAG-T  138

seq1  CATGAATATTCCCACTATTTAAAGAGGAATGCTAAGTTCTTTCTAGTTTT  199
      |||| |||||||||||||||||||||| |||||||| || |||||| |||
seq2  CATG-ATATTCCCACTATTTAAAGAGG-ATGCTAAG-TCCTTCTAG-TTT  184

seq1  ATAATATTTTTCGTAGCCTCATAAAATATCTAATTGCAGTTCAATTTAAA  249
      || ||||||||||||| ||||| |||||||||| ||||||||||||||||
seq2  AT-ATATTTTTCGTAG-CTCAT-AAATATCTAA-TGCAGTTCAATTTAAA  230

seq1  ATCAAGGAT-AAAATGTTTGAGGATCTTAAAAATACTAACTAAAACTCAG  298
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  ATCAAGGATAAAAATGTTTGAGGATC-TAAAAATACTAACTAAAACTCAG  279

seq1  GGTGCAAACAAGGTGTTTGACGTTGGTTCTCTCCATTTGTTGTTGTTGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAAACAAGGTGTTTGACGTTGGTTCTCTCCATTTGTTGTTGTTGTT  329

seq1  GCCTGTAATGAACATTTACTTGGTATGTTATGTGAATATAAACAAAATCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAATGAACATTTACTTGGTATGTTATGTGAATATAAACAAAATCA  379

seq1  AGGCACTTATTTGAAGGTTATCTGTGTATTAACTTAATTTTTCTTTATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTTATTTGAAGGTTATCTGTGTATTAACTTAATTTTTCTTTATTA  429

seq1  CAAAGGGGTGTGATCTCTACTCTTAATTATTTCCCTTATGACAGCCAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGGTGTGATCTCTACTCTTAATTATTTCCCTTATGACAGCCAAAT  479

seq1  AAATTTAATTCACAAAAAATATATCAAAAGCAAATGGGATTTGTTTTTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAATTCACAAAAAATATATCAAAAGCAAATGGGATTTGTTTTTAT  529

seq1  TTAAAAAGTTTTCTTAAGACCTTCAAAGAGAACATCCATCCTTACCCTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTTTTCTTAAGACCTTCAAAGAGAACATCCATCCTTACCCTTT  579

seq1  AGAAAATGCATAAGTACCAACAACATATCCTCTTCACTTAAAAGCCCAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGCATAAGTACCAACAACATATCCTCTTCACTTAAAAGCCCAGA  629

seq1  TATTTTACAGGCCTGAGAAGCGATTTTGAGATGAGCAGTAACGATTTGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACAGGCCTGAGAAGCGATTTTGAGATGAGCAGTAACGATTTGTC  679

seq1  CTAGTAAAGGCAGATTGCTGTGTGCCTCTTTTCTTCAGCTCCCAGCCTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAAGGCAGATTGCTGTGTGCCTCTTTTCTTCAGCTCCCAGCCTTG  729

seq1  TGACTTTTATGCACATATCCTATACATGCTCTTCCCCTCCCTCCGCCATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTATGCACATATCCTATACATGCTCTTCCCCTCCCTCCGCCATA  779

seq1  ATATTGTCCAGCGATTACTCACACTCATTTGTATGATTTTCCTTAATGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTCCAGCGATTACTCACACTCATTTGTATGATTTTCCTTAATGGC  829

seq1  TCAATGTGTCATGTAATTCCACAGGGCACCTGAACTCTGCTAGATCTGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGTCATGTAATTCCACAGGGCACCTGAACTCTGCTAGATCTGCT  879

seq1  TGAAATTTCATTCTTGATTTTTTTTTGTCCCTTCATTCTGTCTTTTTCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTCATTCTTGATTTTTTTTTGTCCCTTCATTCTGTCTTTTTCCT  929

seq1  TCTTTTGTTTTCTGAAATCCTAGAGCCTTCTGGGAGGAGGGGTGTGTCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTTTCTGAAATCCTAGAGCCTTCTGGGAGGAGGGGTGTGTCTC  979

seq1  AGTAAACCATGGGAATAGATCCTTTACATCAGTACAAAATCTTTTCCCCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCATGGGAATAGATCCTTTACATCAGTACAAAATCTTTTCCCCC  1029

seq1  TGTCAGAGTCAACATGATTCACACTGGGTGTTTCAAAGATGGGGCCAACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGTCAACATGATTCACACTGGGTGTTTCAAAGATGGGGCCAACT  1079

seq1  GAGAAACTAAGCCCAAGTGCATGAAGAAAACTGAAACACACTTATTGAAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTAAGCCCAAGTGCATGAAGAAAACTGAAACACACTTATTGAAG  1129

seq1  CCTTGCAACAACTAGGCTGCATATCTGAGAATTC  1182
      ||||||||||||||||||||||||||||||||||
seq2  CCTTGCAACAACTAGGCTGCATATCTGAGAATTC  1163


seq1: chr3_4187701_4188572
seq2: B6Ng01-133D10.g_263_1119

seq1  TGTTTCCTCCCCCAATTTTCTCTCTCTTCTCTTTCTTCACTTAATTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTCCCCCAATTTTCTCTCTCTTCTCTTTCTTCACTTAATTCTCC  50

seq1  AACTTAAGCACTGTCCCACCCATCCAATCTCTTGTATTCTCTTTGCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAGCACTGTCCCACCCATCCAATCTCTTGTATTCTCTTTGCATAA  100

seq1  TGATATCTATTTCTTCTCCCTAGTCCCTTATCCTGTACCTACTCTTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTATTTCTTCTCCCTAGTCCCTTATCCTGTACCTACTCTTGGAG  150

seq1  GTTGTATGAGTTGTAGCTTGGTTATTATGGACTGTACAGCTAATATCGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATGAGTTGTAGCTTGGTTATTATGGACTGTACAGCTAATATCGAT  200

seq1  AGATAAGTGAATATATTTCATTTTTGCCTTTTGAAGTCTTTAATACCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGTGAATATATTTCATTTTTGCCTTTTGAAGTCTTTAATACCTCT  250

seq1  TTCAGATTTTTCATATTTCTATGTTTAACTTAAAATTTCAGGATGTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTTTTCATATTTCTATGTTTAACTTAAAATTTCAGGATGTCATT  300

seq1  TATTTACTTTTTAAGCATTAAGTAATATTTGAATGTTAAATGTACCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTTTTTAAGCATTAAGTAATATTTGAATGTTAAATGTACCATAT  350

seq1  TTCTTTACTCTTCTATTGAGGAACATCTAGATTGTTTCCAATTCCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACTCTTCTATTGAGGAACATCTAGATTGTTTCCAATTCCTGTCT  400

seq1  ATCATTAGTAGAACAGCAGTGAACACAGTTTTGTTAGTGTCCCTGTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAGTAGAACAGCAGTGAACACAGTTTTGTTAGTGTCCCTGTGGTA  450

seq1  GGATGAAGCATCCTTTGTATATAGGTTCATGAGTGTTATAGATGGATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGCATCCTTTGTATATAGGTTCATGAGTGTTATAGATGGATCTT  500

seq1  GAGGTATATAGATTCCCATCTTCTTAATCCTGTTTTGTTAGGCATCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATATAGATTCCCATCTTCTTAATCCTGTTTTGTTAGGCATCATCT  550

seq1  GTCTTTCTTTAGTAGATTAAACACTGCAGTTGCTGTAGGTTGAAGTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTTTAGTAGATTAAACACTGCAGTTGCTGTAGGTTGAAGTCAGA  600

seq1  CATGCTTGTGTCTAATTCCAAATAAACTTCCTGTGTATTTCTGTCCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGTGTCTAATTCCAAATAAACTTCCTGTGTATTTCTGTCCCTCT  650

seq1  GAACTTCTATGATTAGCAACACTCTCTATGCTTGTACTATATGCTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCTATGATTAGCAACACTCTCTATGCTTGTACTATATGCTGTGTG  700

seq1  GAGAAGAAATTGAGGGGTCTTCCATTAATAAAATACCTTGTCTGGCCTCA  750
      |||||| |||||| ||||| ||||||||| ||||||||||||||| ||||
seq2  GAGAAG-AATTGA-GGGTC-TCCATTAAT-AAATACCTTGTCTGG-CTCA  745

seq1  GGAGGAAAGGAAGGGCCTAATGTCTCAGAGCCTTGAAATTCCAGGGTGAG  800
      |||||||||||| ||||| |||||||||||||||| |||| |||||||||
seq2  GGAGGAAAGGAA-GGCCT-ATGTCTCAGAGCCTTG-AATTTCAGGGTGAG  792

seq1  GGAATACCCAGAAGGGCCCCCACCCACTCAGAGG-ATAGGGAAGGAGGGA  849
      |  |||||||||  |||||||| ||||||  ||| |||||  ||||||||
seq2  G--ATACCCAGA--GGCCCCCA-CCACTCGAAGGAATAGG--AGGAGGGA  835

seq1  TGCAGGAAGGATTGTGGGAAAGG  872
      |||||| ||||||||||| ||||
seq2  TGCAGG-AGGATTGTGGGGAAGG  857


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