BAC Information

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BAC

Clone NameB6Ng01-133E11
Chromosome3 (Build37)
Map Location 79,874,208 - 79,986,215
singlet/doubletdoublet
Overlap genenone
Upstream geneRapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
Downstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133E11.bB6Ng01-133E11.g
ACCDH933866DH933867
length1,171960
definitionDH933866|Mus musculus domesticus DNA, BAC clone: B6Ng01-133E11, 5' end.DH933867|Mus musculus domesticus DNA, BAC clone: B6Ng01-133E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,985,034 - 79,986,215)(79,874,208 - 79,875,149)
sequence
gaattctcaactgaggaataccgaatggctgagaagcacctaaagaaatg
ttcagcatccttagtcatcaggggaatgcaaatagtttctcattttctaa
gagacaccacagactatatcttaaccatttatcattagcaatgggaggaa
agaaagaaagcttccagagtatgtcacagaaaaactgtacacatctagct
tggtaaaacagatacccctgatcctttatgcatgcagcatatgcaaaatg
catgaaggaattaagtgtcaaggatgatgtggagataaatctaagctgct
tttcaagtagtatctgcctggagccaggagactacaataagcttcatgca
atggagctaagacagatccacccagcctgggagcccactgacaacaaatc
agtgtggttttagattcgagcctgacaggcttcaaagcaaacagaggata
atatttctctgaaacaattctatacagtagggcaaaagatctctatcagg
cttttatttcatattctgcctctttcctaagcatcgacactctgcagatg
ccttctgatacaatctcaacaggcttgaaatagcttacacttacttgtgg
tattgccccaaatcaacattgcacagcttgtggaaagcacttggtgcaac
tgcagaagctaacatgggttttaaagatccttgctccggttttcatttat
atattccttatgtgaaaaaaaattgtattcaaaaactcttgcacataatt
atattaaatatggggctttgctctattcagttttactaacagggagaatt
atttgctaaacatatgcatttgcatttcagtcgcatgtatccccatagtg
tctggaaatgggttattgtaactaacattctgtttcatttcctgacaatg
tttttttttttttttgagtgggagcttatgaagaaatgcccttgctaaga
atgagggacaagggatttggcaccatttcttaagttgaaaggcatgcact
gcatagaagaaaaaccagtttattattagtagcatatattgtagaggtca
cagaaatcatatttgttctgcatggtaccctctaaaaacaatactagttt
tcactgcttttttttaaggtctgggactgactagtactttcttttatgct
aggaaagtacttttactactg
gaattcctttccaatatcctgtatcatgaatgccctgaaataattctttt
actattggattatagagaagaaaaggagagggagaaggggaaagggaaaa
gatgtaggaagaggaagaggaggaagaaaggacttttatttagaaacagg
ggatgtcatggaggcctgtgatcttaataaaggctttttcctgtaatttc
tgataaatagcagctgataatcatatggtcacttcaccactgaggatagc
tgattgaagcagaggggtaagctgtggggggaggggctgtcttttgtgat
cattgtgtcctaaaataggttttctctatagattctgactgatcaaggac
ttaaaacaaggatttttcagaatggtgtaatagtcaggattggggaagct
tttatgagtttcccactcaaaaaagaggtgttggtttgaagtgcagggac
aaagtgagctggagcaacagaccacgaccagagtggccattagcaggccc
ctgaaggacagaagtagcagcagcaggttctttgtgtcctcatccaaacc
atggcaatgctggactctggcactgcgtttgctaagtggccatgggttta
tggctgcacagacttgtcctgatgtccaagggcagcctgagttaatcatg
gagcagtccagataatccatcacgcagtcaaaggtgagtgctcctctctc
atcctccagccagattggcctcatccatcattctgcccatcccaaggcgc
cacctccccacagtctcctaaatctaagctcttgaactagtctctgttat
ttttctcccgtccatgtatccatccatcaatgtgaagtccatgcaagctt
aaataaatcttttcctctcactgctacagtttttaagtcacatattctca
tttgtagcctgtaacagctatttactacatgatgcttcatgcttatgaaa
gccgagtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79985034_79986215
seq2: B6Ng01-133E11.b_44_1214 (reverse)

seq1  CAGTAGT-AAAGTACTTTCTTAGCATATAAG-AAGTACTAGGTTCAGTTC  48
      ||||||| ||||||||||| ||||||| ||| |||||||||  |||| ||
seq2  CAGTAGTAAAAGTACTTTCCTAGCATAAAAGAAAGTACTAG--TCAG-TC  47

seq1  CCAGACCTTAAAAAAATAGCAGTGAAAACTAGTTATTTGTTTTTTAGAGG  98
      |||||||||||||||| ||||||||||||||| ||||   ||||||||||
seq2  CCAGACCTTAAAAAAA-AGCAGTGAAAACTAG-TATT--GTTTTTAGAGG  93

seq1  GTACATTGCAGAACAAATATTGATTTTCTGTGAACTTCTACATATAT-TG  147
      ||||  ||||||||||||| ||| |||||||| || |||||| |||| ||
seq2  GTACCATGCAGAACAAATA-TGA-TTTCTGTG-ACCTCTACA-ATATATG  139

seq1  CTACTAATAATATACTTGGTATTTTCTTCTATGCAGTGCATGCCTTTCAA  197
      |||||||||||| || |||| ||||||||||||||||||||||||||| |
seq2  CTACTAATAATAAAC-TGGT-TTTTCTTCTATGCAGTGCATGCCTTTC-A  186

seq1  ACTTAAGAAATGGTGCCAGATCCCTTGTCCCTCATTCTTAGCAAGGGCAT  247
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACTTAAGAAATGGTGCCAAATCCCTTGTCCCTCATTCTTAGCAAGGGCAT  236

seq1  TTCTTCATAAGCTCCCACTCAAAAAAAAAAAAAAACATTGTCAGGAAATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATAAGCTCCCACTCAAAAAAAAAAAAAAACATTGTCAGGAAATG  286

seq1  AAACAGAATGTTAGTTACAATAACCCATTTCCAGACACTATGGGGATACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAATGTTAGTTACAATAACCCATTTCCAGACACTATGGGGATACA  336

seq1  TGCGACTGAAATGCAAATGCATATGTTTAGCAAATAATTCTCCCTGTTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACTGAAATGCAAATGCATATGTTTAGCAAATAATTCTCCCTGTTAG  386

seq1  TAAAACTGAATAGAGCAAAGCCCCATATTTAATATAATTATGTGCAAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGAATAGAGCAAAGCCCCATATTTAATATAATTATGTGCAAGAG  436

seq1  TTTTTGAATACAATTTTTTTTCACATAAGGAATATATAAATGAAAACCGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAATACAATTTTTTTTCACATAAGGAATATATAAATGAAAACCGG  486

seq1  AGCAAGGATCTTTAAAACCCATGTTAGCTTCTGCAGTTGCACCAAGTGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGATCTTTAAAACCCATGTTAGCTTCTGCAGTTGCACCAAGTGCT  536

seq1  TTCCACAAGCTGTGCAATGTTGATTTGGGGCAATACCACAAGTAAGTGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAGCTGTGCAATGTTGATTTGGGGCAATACCACAAGTAAGTGTA  586

seq1  AGCTATTTCAAGCCTGTTGAGATTGTATCAGAAGGCATCTGCAGAGTGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTCAAGCCTGTTGAGATTGTATCAGAAGGCATCTGCAGAGTGTC  636

seq1  GATGCTTAGGAAAGAGGCAGAATATGAAATAAAAGCCTGATAGAGATCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTAGGAAAGAGGCAGAATATGAAATAAAAGCCTGATAGAGATCTT  686

seq1  TTGCCCTACTGTATAGAATTGTTTCAGAGAAATATTATCCTCTGTTTGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTACTGTATAGAATTGTTTCAGAGAAATATTATCCTCTGTTTGCT  736

seq1  TTGAAGCCTGTCAGGCTCGAATCTAAAACCACACTGATTTGTTGTCAGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCCTGTCAGGCTCGAATCTAAAACCACACTGATTTGTTGTCAGTG  786

seq1  GGCTCCCAGGCTGGGTGGATCTGTCTTAGCTCCATTGCATGAAGCTTATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCAGGCTGGGTGGATCTGTCTTAGCTCCATTGCATGAAGCTTATT  836

seq1  GTAGTCTCCTGGCTCCAGGCAGATACTACTTGAAAAGCAGCTTAGATTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTCCTGGCTCCAGGCAGATACTACTTGAAAAGCAGCTTAGATTTA  886

seq1  TCTCCACATCATCCTTGACACTTAATTCCTTCATGCATTTTGCATATGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACATCATCCTTGACACTTAATTCCTTCATGCATTTTGCATATGCT  936

seq1  GCATGCATAAAGGATCAGGGGTATCTGTTTTACCAAGCTAGATGTGTACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATAAAGGATCAGGGGTATCTGTTTTACCAAGCTAGATGTGTACA  986

seq1  GTTTTTCTGTGACATACTCTGGAAGCTTTCTTTCTTTCCTCCCATTGCTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTGTGACATACTCTGGAAGCTTTCTTTCTTTCCTCCCATTGCTA  1036

seq1  ATGATAAATGGTTAAGATATAGTCTGTGGTGTCTCTTAGAAAATGAGAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAATGGTTAAGATATAGTCTGTGGTGTCTCTTAGAAAATGAGAAA  1086

seq1  CTATTTGCATTCCCCTGATGACTAAGGATGCTGAACATTTCTTTAGGTGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGCATTCCCCTGATGACTAAGGATGCTGAACATTTCTTTAGGTGC  1136

seq1  TTCTCAGCCATTCGGTATTCCTCAGTTGAGAATTC  1182
      |||||||||||||||||||||||||||||||||||
seq2  TTCTCAGCCATTCGGTATTCCTCAGTTGAGAATTC  1171

seq1: chr3_79874208_79875149
seq2: B6Ng01-133E11.g_65_994

seq1  GAATTCCTTTCCAATATCCTGTATCATGAATGCCCTGAAATAATTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCCAATATCCTGTATCATGAATGCCCTGAAATAATTCTTTT  50

seq1  ACTATTGGATTATAGAGAAGAAAAGGAGAGGGAGAAGGGGAAAGGGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGGATTATAGAGAAGAAAAGGAGAGGGAGAAGGGGAAAGGGAAAA  100

seq1  GATGTAGGAAGAGGAAGAGGAGGAAGAAAGGACTTTTATTTAGAAACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGGAAGAGGAAGAGGAGGAAGAAAGGACTTTTATTTAGAAACAGG  150

seq1  GGATGTCATGGAGGCCTGTGATCTTAATAAAGGCTTTTTCCTGTAATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCATGGAGGCCTGTGATCTTAATAAAGGCTTTTTCCTGTAATTTC  200

seq1  TGATAAATAGCAGCTGATAATCATATGGTCACTTCACCACTGAGGATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATAGCAGCTGATAATCATATGGTCACTTCACCACTGAGGATAGC  250

seq1  TGATTGAAGCAGAGGGGTAAGCTGTGGGGGGAGGGGCTGTCTTTTGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAAGCAGAGGGGTAAGCTGTGGGGGGAGGGGCTGTCTTTTGTGAT  300

seq1  CATTGTGTCCTAAAATAGGTTTTCTCTATAGATTCTGACTGATCAAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTCCTAAAATAGGTTTTCTCTATAGATTCTGACTGATCAAGGAC  350

seq1  TTAAAACAAGGATTTTTCAGAATGGTGTAATAGTCAGGATTGGGGAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAAGGATTTTTCAGAATGGTGTAATAGTCAGGATTGGGGAAGCT  400

seq1  TTTATGAGTTTCCCACTCAAAAAAGAGGTGTTGGTTTGAAGTGCAGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGTTTCCCACTCAAAAAAGAGGTGTTGGTTTGAAGTGCAGGGAC  450

seq1  AAAGTGAGCTGGAGCAACAGACCACGACCAGAGTGGCCATTAGCAGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGCTGGAGCAACAGACCACGACCAGAGTGGCCATTAGCAGGCCC  500

seq1  CTGAAGGACAGAAGTAGCAGCAGCAGGTTCTTTGTGTCCTCATCCAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGACAGAAGTAGCAGCAGCAGGTTCTTTGTGTCCTCATCCAAACC  550

seq1  ATGGCAATGCTGGACTCTGGCACTGCGTTTGCTAAGTGGCCATGGGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAATGCTGGACTCTGGCACTGCGTTTGCTAAGTGGCCATGGGTTTA  600

seq1  TGGCTGCACAGACTTGTCCTGATGTCCAAGGGCAGCCTGAGTTAATCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCACAGACTTGTCCTGATGTCCAAGGGCAGCCTGAGTTAATCATG  650

seq1  GAGCAGGTCCAGATAATCCATCACGCAGTCAAAGGTGAGTGCTCCCCTCT  700
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGCA-GTCCAGATAATCCATCACGCAGTCAAAGGTGAGTGCTCCTCTCT  699

seq1  CATCCTCCAGCCAGATTGGCCTCATCCATCATTCTGCCCATCCCAAGGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCAGCCAGATTGGCCTCATCCATCATTCTGCCCATCCCAAGGCG  749

seq1  CCACCTCCCCACAGTCTCCTAAATCTAAGCTCTTGAACTTAGTCTCTGTT  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCACCTCCCCACAGTCTCCTAAATCTAAGCTCTTGAAC-TAGTCTCTGTT  798

seq1  ATTTTTTCTCCCGTCCATGTATCCAATCCATCAATGTGAAGTCCATGCAA  850
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  A-TTTTTCTCCCGTCCATGTATCC-ATCCATCAATGTGAAGTCCATGCAA  846

seq1  GCTTAAATAAATCCTTTTCCTCTCCACTGCTACCAGTATTTTAAGTCACA  900
      |||||||||||| |||||||||| |||||||| |||| ||||||||||| 
seq2  GCTTAAATAAAT-CTTTTCCTCT-CACTGCTA-CAGT-TTTTAAGTCAC-  891

seq1  ATAATTTCTCATTTGTAGCCTGTAACAGCTATTGTACTACAT  942
      |||  |||||||||||||||||||||||||||| ||||||||
seq2  ATA--TTCTCATTTGTAGCCTGTAACAGCTATT-TACTACAT  930