BAC Information

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BAC

Clone NameB6Ng01-133F06
Chromosome3 (Build37)
Map Location 62,450,937 - 62,515,201
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
Downstream geneLOC676984, LOC666967, Mme, Plch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133F06.bB6Ng01-133F06.g
ACCDH933904DH933905
length1,1941,068
definitionDH933904|Mus musculus domesticus DNA, BAC clone: B6Ng01-133F06, 5' end.DH933905|Mus musculus domesticus DNA, BAC clone: B6Ng01-133F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,513,994 - 62,515,201)(62,450,937 - 62,452,011)
sequence
gaattctagacttactggcaaatcccgtctttaagtttatcaaattaatt
tataaaccatcataaaaatggctttttaattcaaagtaagtagtccacta
gtctctacttatgctgaatatgaggaatctaaagcttataaacaaatatt
aacaaatggcatttttcaagccaacaatccactgaaggcatggttgacag
tagcttgaatattgaaaagtaaaggcaactaaggattttttttttaaatc
caacatagaagagaaaggaatcatatgatgccatattctaatcattgcac
aaataatgggatgctttattacattaggtattttagccaatatgaatata
tttactaaacttcattaaggatcaggaaaatttggttcagtggtcaaatg
tgaaccttgcatgttatgtgtggtctcacaacataagaaaaataaaagga
gagggaacagagaaagggagtgtgacagaagaaaaaaaatgggcagataa
catgcaaacatagcctgctaatccctagggaataaaatggattagatgac
agttgtcaaaaaggatggtgacaactcaaaatctttagttttaatgccaa
agtaaaccaggaatctttacaaagcagaaaaagaaaactctatatttagc
tcagaggattggacacaatatgtgagtttactccttcttgtgagagtgga
taactagagccaagaatacttttgccagtaatgattatttaaagaagaag
agaagaggaaggaagactaagtggcagatgaaaaagaaccctgggataac
catgtcttatcagtctttagccagagcaaaaaagggaaggcattttgaaa
cgaacattcctactaagtctgcagcttttgagcattagagtcagaaagtg
tgcagggactacacaatgaaatccaagcaatcagaatgcctctagactag
aggaaagaaacttcagatagaactgtacaccatgagtggaatgaaacagg
attggagtcataatctagccgaatgcatacccagggtttcaaacagtacc
accaggcatcagtaggtcaccatgggcctcaccagcatgcactactcctt
agagagcccggagaatgttgacagaatatggccttatcatgagtgacctc
cctctgacggacccccatccatgactcgatccaacctgaagtga
gaattctttgtttagctctgagccccatcttttaagggggttatttgata
ttctggagtccaccctcttgaattctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacttttgtcaataagacttttgtcttattgacttttg
tctttttgtcttttgccttgcagaagctttgaagtttcatgaggtcccat
ttgtcaatcctcgatcttacagcacaagccattgctgttctattcaggaa
ttttttcccctgtgcccatatctttgaggctttcccccactttctcctct
ataagtttcagtgtctctggttttatgtgaagttccttgatccacttaga
tttgaccttagtacaaggagataggaatggatcgattcacattcttctac
atgatcttattgcttttctatgtggaatatttgcaggagctgttccttgc
attggaaggtcttggccactcaaagaagttgaatatgcaccctctgatat
cactcttggccttcctttctagcttcctttagttgtgcttgccctaaatt
catagttcagcatttcctttcttctgtcagtctccagatgatctgtgcta
gaaatctttcagcatgactctggctgtgatttaagacagtttctcttttt
agttctttcttcctcagttttgtgtcctgcctctagccaactctcaaatt
ctcccactgacaacagtggctctgagaagtcacctgaaactctttctgtc
ttaagacaaggagtcagtaaggacccccatcttgtgcattcacaatctgt
atgttttcttctagagccagcagatcatgtccagtcttacagaagagaca
tacagttctgtgaaggcctatgagggagactatggccctattgctggtta
gttttctattatttaccaatatatgaggcaataaattgataaagggaaag
tattttgctcacagctctttttttttgttggtggtggtgtggccacatgc
tttgttcttgatgcatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_62513994_62515201
seq2: B6Ng01-133F06.b_46_1239 (reverse)

seq1  TCACTTCAGTTTGTGATACTGAGTCATGGATGGTGGTCCTGTCAGAGGGA  50
      ||||||||| ||| |||   ||||||||||||| ||||| ||||||||||
seq2  TCACTTCAGGTTG-GAT--CGAGTCATGGATGGGGGTCC-GTCAGAGGGA  46

seq1  GGTCACTCATGGATAAGGCACATATTCTGGTCACA-TCTCCGGGCTTCCT  99
      |||||||||| |||||||| |||||||||   ||| ||||||||||  ||
seq2  GGTCACTCAT-GATAAGGC-CATATTCTGTCAACATTCTCCGGGCT--CT  92

seq1  CTTAGGAGTTAAGTTGCATGCTGGTGAGGCCCATGGTGACCCTTACTGAT  149
      || ||||||  || |||||||||||||||||||||||||||  |||||||
seq2  CTAAGGAGT--AG-TGCATGCTGGTGAGGCCCATGGTGACC--TACTGAT  137

seq1  GCCTGGT-GTACTGTTTGAAA-CCTGTGTATGCATTCCGCTAAGATTATG  197
      ||||||| ||||||||||||| |||| |||||||||| ||| ||||||||
seq2  GCCTGGTGGTACTGTTTGAAACCCTGGGTATGCATTCGGCT-AGATTATG  186

seq1  ACTCCAATCCTGTTTCATTCCACTCATTGTTGTACAGTTCTTATCTGAAG  247
      |||||||||||||||||||||||||| || |||||||||| |||||||||
seq2  ACTCCAATCCTGTTTCATTCCACTCA-TGGTGTACAGTTC-TATCTGAAG  234

seq1  TTTCTTTCCTCTAGTCTAGAGGCATTCTTGATTGCTTGGATTTCATTGTG  297
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTCTTTCCTCTAGTCTAGAGGCATTC-TGATTGCTTGGATTTCATTGTG  283

seq1  TAGTCCCTGCACACTTTCTGACTCTAAATGCTC-AAAGCTGCAGACTTAG  346
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  TAGTCCCTGCACACTTTCTGACTCT-AATGCTCAAAAGCTGCAGACTTAG  332

seq1  TAGGAATGTTCGTTTCAAAATGCCTTCCCTTTTTTGCTCTGGCTAAAGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGTTCGTTTCAAAATGCCTTCCCTTTTTTGCTCTGGCTAAAGAC  382

seq1  TGATAAGACATGGTTATCCCAGGGTTCTTTTTCATCTGCCACTTAGTCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGACATGGTTATCCCAGGGTTCTTTTTCATCTGCCACTTAGTCTT  432

seq1  CCTTCCTCTTCTCTTCTTCTTTAAATAATCATTACTGGCAAAAGTATTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCTTCTCTTCTTCTTTAAATAATCATTACTGGCAAAAGTATTCT  482

seq1  TGGCTCTAGTTATCCACTCTCACAAGAAGGAGTAAACTCACATATTGTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTAGTTATCCACTCTCACAAGAAGGAGTAAACTCACATATTGTGT  532

seq1  CCAATCCTCTGAGCTAAATATAGAGTTTTCTTTTTCTGCTTTGTAAAGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCTCTGAGCTAAATATAGAGTTTTCTTTTTCTGCTTTGTAAAGAT  582

seq1  TCCTGGTTTACTTTGGCATTAAAACTAAAGATTTTGAGTTGTCACCATCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTTACTTTGGCATTAAAACTAAAGATTTTGAGTTGTCACCATCC  632

seq1  TTTTTGACAACTGTCATCTAATCCATTTTATTCCCTAGGGATTAGCAGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACAACTGTCATCTAATCCATTTTATTCCCTAGGGATTAGCAGGC  682

seq1  TATGTTTGCATGTTATCTGCCCATTTTTTTTCTTCTGTCACACTCCCTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTGCATGTTATCTGCCCATTTTTTTTCTTCTGTCACACTCCCTTT  732

seq1  CTCTGTTCCCTCTCCTTTTATTTTTCTTATGTTGTGAGACCACACATAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCCCTCTCCTTTTATTTTTCTTATGTTGTGAGACCACACATAAC  782

seq1  ATGCAAGGTTCACATTTGACCACTGAACCAAATTTTCCTGATCCTTAATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGGTTCACATTTGACCACTGAACCAAATTTTCCTGATCCTTAATG  832

seq1  AAGTTTAGTAAATATATTCATATTGGCTAAAATACCTAATGTAATAAAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAGTAAATATATTCATATTGGCTAAAATACCTAATGTAATAAAGC  882

seq1  ATCCCATTATTTGTGCAATGATTAGAATATGGCATCATATGATTCCTTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATTATTTGTGCAATGATTAGAATATGGCATCATATGATTCCTTTC  932

seq1  TCTTCTATGTTGGATTTAAAAAAAAAATCCTTAGTTGCCTTTACTTTTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATGTTGGATTTAAAAAAAAAATCCTTAGTTGCCTTTACTTTTCA  982

seq1  ATATTCAAGCTACTGTCAACCATGCCTTCAGTGGATTGTTGGCTTGAAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAGCTACTGTCAACCATGCCTTCAGTGGATTGTTGGCTTGAAAA  1032

seq1  ATGCCATTTGTTAATATTTGTTTATAAGCTTTAGATTCCTCATATTCAGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTTGTTAATATTTGTTTATAAGCTTTAGATTCCTCATATTCAGC  1082

seq1  ATAAGTAGAGACTAGTGGACTACTTACTTTGAATTAAAAAGCCATTTTTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAGAGACTAGTGGACTACTTACTTTGAATTAAAAAGCCATTTTTA  1132

seq1  TGATGGTTTATAAATTAATTTGATAAACTTAAAGACGGGATTTGCCAGTA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTTATAAATTAATTTGATAAACTTAAAGACGGGATTTGCCAGTA  1182

seq1  AGTCTAGAATTC  1208
      ||||||||||||
seq2  AGTCTAGAATTC  1194

seq1: chr3_62450937_62452011
seq2: B6Ng01-133F06.g_67_1134

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATCTTTTAAGGGGGTTATTTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATCTTTTAAGGGGGTTATTTGATA  50

seq1  TTCTGGAGTCCACCCTCTTGAATTCTTTATATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCCTCTTGAATTCTTTATATATATTGGATATTAGTCCC  100

seq1  CTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150

seq1  TTTTGTCTTATTGACTTTTGTCAATAAGACTTTTGTCTTATTGACTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACTTTTGTCAATAAGACTTTTGTCTTATTGACTTTTG  200

seq1  TCTTTTTGTCTTTTGCCTTGCAGAAGCTTTGAAGTTTCATGAGGTCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGTCTTTTGCCTTGCAGAAGCTTTGAAGTTTCATGAGGTCCCAT  250

seq1  TTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA  300

seq1  TTTTTTCCCCTGTGCCCATATCTTTGAGGCTTTCCCCCACTTTCTCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCCCTGTGCCCATATCTTTGAGGCTTTCCCCCACTTTCTCCTCT  350

seq1  ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGA  400

seq1  TTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCACATTCTTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCACATTCTTCTAC  450

seq1  ATGATCTTATTGCTTTTCTATGTGGAATATTTGCAGGAGCTGTTCCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTTATTGCTTTTCTATGTGGAATATTTGCAGGAGCTGTTCCTTGC  500

seq1  ATTGGAAGGTCTTGGCCACTCAAAGAAGTTGAATATGCACCCTCTGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGGTCTTGGCCACTCAAAGAAGTTGAATATGCACCCTCTGATAT  550

seq1  CACTCTTGGCCTTCCTTTCTAGCTTCCTTTAGTTGTGCTTGCCCTAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGGCCTTCCTTTCTAGCTTCCTTTAGTTGTGCTTGCCCTAAATT  600

seq1  CATAGTTCAGCATTTCCTTTCTTCTGTCAGTCTCCAGATGATCTGTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCAGCATTTCCTTTCTTCTGTCAGTCTCCAGATGATCTGTGCTA  650

seq1  GAAATCTTTCAGCATGACTCTGGCTGTGATTTAAGACAGTTTCTCTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTTCAGCATGACTCTGGCTGTGATTTAAGACAGTTTCTCTTTTT  700

seq1  AGTTCTTTCTTCCTCAGTTTTGTGTCCTGCCTCTAGCCAACTCTCAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTCTTCCTCAGTTTTGTGTCCTGCCTCTAGCCAACTCTCAAATT  750

seq1  CTCCCACTGACAACAGTGGCTCTGAGAAGTCACCTGAAACTCTTTCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTGACAACAGTGGCTCTGAGAAGTCACCTGAAACTCTTTCTGTC  800

seq1  TTAAGACAAGGAGTCAGTAAGGACCCCCATCTTGTGCATTCACAATCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAAGGAGTCAGTAAGGACCCCCATCTTGTGCATTCACAATCTGT  850

seq1  ATGTTTTCTTCTAGAGCCAGCAGATCATGTCCAGTCTTAACAGAAGAGAC  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGTTTTCTTCTAGAGCCAGCAGATCATGTCCAGTCTT-ACAGAAGAGAC  899

seq1  ATACAGTTCTGTGAAGGCCTATGAGGGAGACTATGGCCCTATTGCTGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTCTGTGAAGGCCTATGAGGGAGACTATGGCCCTATTGCTGGTT  949

seq1  AGTTTTCTATTAATTTAACCAATATATGAGGCAATAAATTGATAAAGGGA  1000
      ||||||||||||  || |||||||||||||||||||||||||||||||||
seq2  AGTTTTCTATTA--TTTACCAATATATGAGGCAATAAATTGATAAAGGGA  997

seq1  AAGTATTTTGCTTCACAGCTC-TATGTTTTGTTGGTGGTTGGTGTGGCCA  1049
      ||||||||||| ||||||||| | | |||||||||||| |||||||||||
seq2  AAGTATTTTGC-TCACAGCTCTTTTTTTTTGTTGGTGG-TGGTGTGGCCA  1045

seq1  CATGCTTTTGTTCTATGATGGCATAT  1075
      ||||| |||||||| |||| ||||||
seq2  CATGC-TTTGTTCT-TGAT-GCATAT  1068