BAC Information

Click to search

BAC

Clone NameB6Ng01-133H05
Chromosome3 (Build37)5 (Build37)
Map Location 13,673,178 - 13,673,58642,953,844 - 42,954,471
singlet/doubletsingletsinglet
Overlap gene0710005M24Rik
Upstream geneEG668033, LOC668037, LOC100039823, LOC100039861, LOC100041679, LOC100041667
Downstream geneLOC100039882, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133H05.bB6Ng01-133H05.g
ACCDH933993DH933994
length909896
definitionDH933993|Mus musculus domesticus DNA, BAC clone: B6Ng01-133H05, 5' end.DH933994|Mus musculus domesticus DNA, BAC clone: B6Ng01-133H05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,673,178 - 13,673,586)(42,953,844 - 42,954,471)
sequence
gaattcttcttcccactgttttctcaactttttgaagacaatctctgtgt
gcattttgatatagtcatggaaaacacacaggaacaatatatatatgaat
taaaatgaacacagtatattaatgcctaatacacttaaattttggctaag
cccgttctctttctagaagaattatcaagttcactttttagaaaagactg
tgtgttgtttatcaccaaggaagtcaggactggaactcaaacaactcagg
aagcaggagctgatgcagaggccatggaggaatgttctttactggtttgc
ttcccctggcttgctcagcctgctctcttatagaaccaagactaccagcc
cagagatggtcccaccacaaggggcctttcccccttgatcagtaattgag
gaaatgcctttcaattgtatctcatggagtcatttcctcaactgaagctc
tttctctgtaataactccggctgtgtcaagttgacacaaaactagccagt
acaggctccttaaaatttctagtctggatctggtttgagatatcctggtt
tatgatcattcttattttgaatttgttaatataaaatagattgagacttc
tgtaatttaaaagaaccagtagtggctgggtgtgatgggacatgctgctg
tcctagtatttggtgatatttgtcttaaagaaacaaaagtagaggtgtgg
aatgtgggaagccgcccccacattcgccgtcacaagatggcgctgacatc
ctgtgttctaagttggtaaacaaataatctgcgcatgtgccaagggtatt
tacgactacttgtactctgtttttcccgtgaacgtcagctcggccatggg
ctgcagccaatcaggagtgatgcgtcctaagcattgttgttctcttaaag
agggaaggg
gaattcagtattgtgtgagagatcatgtgtatttggtaatattctacaaa
ctctaaaacacgtgtatttaaaccaatagttctatttatgaagatttatt
gtgtacaaatgtttatactgacaaataatatatttgccaaaaaactctct
ctcacatatgggagttctctggtgggattttaaggggtcacttaagtatt
ctatcatatcatttcaaatagtgcagatattttgacttcttcttttccaa
tttgtacccctatgacctctgcttatgtctaattgttctggctaccagag
aattcctacagctaataaacaactccagcaaagtggctggatataaaatt
aactcaaacaaatcagtagccttcctctactcaaaggataaacagtctga
gaaagaaattagggaaatgacacccttcataatagtcacaaataatataa
aataccttggtgtgacctaaaccaagcaagtgaaagatctgtatgataag
aacttcaaatctctggagaaagaaattgaagaagatctcagaagatggaa
agatctcccatgcttatggattggcaagattaatatagtgaaattggtca
tttgccacaagcaatctatagatccaatgcaatccccatcaaaatttgaa
ctcaattcttcatagagttaaaaagggcagcttgcaaattcatttggaat
aacaaaaaactcaggatatgaaaaactaatctcaacaacaaaagaacttc
tgggggaatcagcattcctgacctcaagctgtactacaagcaatagtgat
aaaactgtatggtattggtacagagtcaggaaggaagatcaatggagcat
aactgaagacccagaaatgaacccacacacctatggtcacttgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13673178_13673586
seq2: B6Ng01-133H05.b_250_726

seq1  TGTTTATTACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGAAAGCA  50
      ||||||| ||||||||||||||||||||||||||| ||  |||| |||||
seq2  TGTTTATCACCAAGGAAGTCAGGACTGGAACTCAAACAACTCAGGAAGCA  50

seq1  GAAGCTGATGCAGAAGCCATGGAGGGATGTTCTTTACTGGCTCGCTTCCC  100
      | |||||||||||| |||||||||| |||||||||||||| | |||||||
seq2  GGAGCTGATGCAGAGGCCATGGAGGAATGTTCTTTACTGGTTTGCTTCCC  100

seq1  CTGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAGCCCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAGCCCAGAG  150

seq1  ATGGTCCCACCCACAAGGGACCTTTCCCCCTTGATCAGTAGTTGAGAAAA  200
      ||||||||| ||||||||| |||||||||||||||||||| ||||| |||
seq2  ATGGTCCCA-CCACAAGGGGCCTTTCCCCCTTGATCAGTAATTGAGGAAA  199

seq1  TGCCTTACAGTTGGATCTCATGGAGGCATTTCCTGAACTGAAGCTCCTTT  250
      |||||| || ||| ||||||||||| |||||||| |||||||||| ||||
seq2  TGCCTTTCAATTGTATCTCATGGAGTCATTTCCTCAACTGAAGCT-CTTT  248

seq1  CTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACA  300
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTGTAATAACTCCGGCTGTGTCAAGTTGACACAAAACTAGCCAGTACA  298

seq1  G--------------------TCAATCTG----GCAATAT-----TTTA-  320
      |                    |  |||||    |  ||||     |||| 
seq2  GGCTCCTTAAAATTTCTAGTCTGGATCTGGTTTGAGATATCCTGGTTTAT  348

seq1  ---AATTC-TCTAGCGATAATATTAATAAACAAAA-----AG----GTAT  357
          |||| | |   ||   | |||||| | || |     ||     | |
seq2  GATCATTCTTATTTTGAATTTGTTAATATAAAATAGATTGAGACTTCTGT  398

seq1  GATTTAAA--CTCTATTA--AGCT-----TAA----AGAT---------C  385
       |||||||    | | ||   |||     | |    | ||         |
seq2  AATTTAAAAGAACCAGTAGTGGCTGGGTGTGATGGGACATGCTGCTGTCC  448

seq1  TAG-----GCAAATATTTGTCTTAAAGAA  409
      |||     |   |||||||||||||||||
seq2  TAGTATTTGGTGATATTTGTCTTAAAGAA  477

seq1: chr5_42953844_42954471
seq2: B6Ng01-133H05.g_68_695

seq1  GAATTCAGTAGTTTGTGAGAGATCATGTGTATTTGGTAATATTCTACAAA  50
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATTGTGTGAGAGATCATGTGTATTTGGTAATATTCTACAAA  50

seq1  CTCTAAAACACGTGTATTTAAACCAATAGTTCTATTTATGAAGATTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAACACGTGTATTTAAACCAATAGTTCTATTTATGAAGATTTATT  100

seq1  GTGTACAAATGTTTATACTGACAAATAATATATTTGCCAAAAAACAAGGT  150
      |||||||||||||||||||||||||||||||||||||||||||||    |
seq2  GTGTACAAATGTTTATACTGACAAATAATATATTTGCCAAAAAACTCTCT  150

seq1  ATGAGATATGGGAGTTCTCTGGTGGGATTTTAAGGGGTCACTTAAGTATT  200
       | | |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATATGGGAGTTCTCTGGTGGGATTTTAAGGGGTCACTTAAGTATT  200

seq1  CTATCATATCATTTCAAATAGTGCAGATATTTTGACTTCTTCTTTTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATATCATTTCAAATAGTGCAGATATTTTGACTTCTTCTTTTCCAA  250

seq1  TTTGTACCCCTATGACCTCTGCTTATGTCTAATTGTTCTGGCTACCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACCCCTATGACCTCTGCTTATGTCTAATTGTTCTGGCTACCAGAG  300

seq1  AATTCCTACAGCTAATAAACAACTCCAGCAAAGTGGCTGGATATAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTACAGCTAATAAACAACTCCAGCAAAGTGGCTGGATATAAAATT  350

seq1  AACTCAAACAAATCAGTAGCCTTCCTCTACTCAAAGGATAAACAGTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAACAAATCAGTAGCCTTCCTCTACTCAAAGGATAAACAGTCTGA  400

seq1  GAAAGAAATTAGGGAAATGACACCCTTCATAATAGTCACAAATAATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATTAGGGAAATGACACCCTTCATAATAGTCACAAATAATATAA  450

seq1  AATACCTTGGTGTGACCTAAACCAAGCAAGTGAAAGATCTGTATGATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTGGTGTGACCTAAACCAAGCAAGTGAAAGATCTGTATGATAAG  500

seq1  AACTTCAAATCTCTGGAGAAAGAAATTGAAGAAGATCTCAGAAGATGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAATCTCTGGAGAAAGAAATTGAAGAAGATCTCAGAAGATGGAA  550

seq1  AGATCTCCCATGCTTATGGATTGGCAAGATTAATATAGTGAAATTGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCCCATGCTTATGGATTGGCAAGATTAATATAGTGAAATTGGTCA  600

seq1  TTTGCCACAAGCAATCTATAGATCCAAT  628
      ||||||||||||||||||||||||||||
seq2  TTTGCCACAAGCAATCTATAGATCCAAT  628