BAC Information

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BAC

Clone NameB6Ng01-133K09
Chromosome3 (Build37)
Map Location 107,720,281 - 107,886,153
singlet/doubletdoublet
Overlap geneGstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2
Upstream geneKcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031
Downstream geneGnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133K09.bB6Ng01-133K09.g
ACCDH934142DH934143
length1,0401,061
definitionDH934142|Mus musculus domesticus DNA, BAC clone: B6Ng01-133K09, 5' end.DH934143|Mus musculus domesticus DNA, BAC clone: B6Ng01-133K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,720,281 - 107,721,327)(107,885,086 - 107,886,153)
sequence
gaattcctgcttgtcttgctgctgttgatgttccttctctgagggggaca
catagtgtattgaggctttgtgtacagagggccaatcagaatggggcctg
aaaagacagttaggcaataagtgtgggtaacaactcttgtgagtgatagg
aaatcctttcttcttttgcctcgtattggaagtcctttgaattttgacag
agaacattatttccttgttggagagcttgatttttttttttttttgatcc
tttaaaataaatcttaaaaaaaaaattttttttttaaagcaggagctgtg
tgcatgctagacacgtgctctaccagacagatttctgacaccctctcatt
attatttgttaggctctcacacataaataacggttatagtttacattgct
tgtttaagcatgcctctggtttaaaattctgcttcatttgtagagcatga
caacaactttgctttattctccccctaccagctgaaacgaattacaaact
cacatgagaaacaatttagggtctggggatatagctaaatgatacggaac
actacatgcatgagttctgggttcaacctgcatgcttgtgcgcgtgcatg
cacacacacacacacacacacatatacacacacatacacacacaagagtt
gtcaacacattttaaaagacaaaccctttgtagatttgtagtggtctgtc
ttccactttagcaaaacacctgaggtaatcaacttgaaaagaggaaaggt
gggggctggagagatggctcagtggttaagagcactgtttgctgctcttt
caaaggtactgagtccaatccccagtaaccatgtggtggctcacaaacat
ctatactaggatctggcgccctcttctggcataatgaagataaagcatgc
acgtccattaaataaataaacaaagaaaccaaaaaacccaaaagatgaaa
gagtatttggttacatttgggatgtcttagtccatggttcccagccactg
cttcgagctgcagcagacaatcatcacattgagagcatgt
gaattcctaattgcagtcacatgggcttagggctctaacctaagctttat
agagtgcttgtaggacatttccctgtgagtcctggggctgcggccaggta
ggacaaggctgcttctcacccactgatagcctgtgtccagaggttaaaac
aagcaagtaaacaaaagcagagtcctatgtgccttccacatgcagttccc
attttccaaggtgctcttcctaaagaggttgtcctcacctgacattagcc
ttgcagctgctgtgaagagtgctgcccgtgtggtctaggaagcctccgta
actagctcctatccacattagaccagtgctccagctaccagccggatcct
gggtagcacagaccttgtctctcttgaagagtctgtagtcagggcccaaa
agacagtggtgggcagagaaagccagcctgaggctgcagggctcagggga
ggattgttggcctccctctgtgtctctccttctaccctttagccagccag
gctgtgtccactttctgtcccctggggctgtggttttaaggagacttggc
ccctcccctgccaggctgccttggccacatcagcttgtcttgtttctccc
tgttgagaccctggatctgggtggtctcactggcatggaagaggttacag
ccatgttagagttctcacctctcaactcttgctccttctctggatttctg
aactcccctgaactctcccagccccctacttgtggccatctcagggtctc
ccctgcttatagttgcacttggtatggcccatgccagcccctgagctgtc
ctgggggactggctgcagctttacaaggcaaacagacagacaaagggcac
agggctgctgaccagaatactcttgaactctgcagtagcgttccagtagg
gaccaaggcaagtaggtagctgggttctgatctagggtaagcaccctctt
tgtccagcattggactgtacctagagtactaggagtgggcacagagacct
tagcacaatgtctagaaagagcttctgcgtccttttttagccagagtgga
ggtgggggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_107720281_107721327
seq2: B6Ng01-133K09.b_48_1087

seq1  GAATTCCTGCTTGTCTTGCTGCTGTTGATGTTCCTTCTCTGAGGGGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTTGTCTTGCTGCTGTTGATGTTCCTTCTCTGAGGGGGACA  50

seq1  CATAGTGTATTGAGGCTTTGTGTACAGAGGGCCAATCAGAATGGGGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGTATTGAGGCTTTGTGTACAGAGGGCCAATCAGAATGGGGCCTG  100

seq1  AAAAGACAGTTAGGCAATAAGTGTGGGTAACAACTCTTGTGAGTGATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAGTTAGGCAATAAGTGTGGGTAACAACTCTTGTGAGTGATAGG  150

seq1  AAATCCTTTCTTCTTTTGCCTCGTATTGGAAGTCCTTTGAATTTTGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTTCTTCTTTTGCCTCGTATTGGAAGTCCTTTGAATTTTGACAG  200

seq1  AGAACATTATTTCCTTGTTGGAGAGCTTGATTTTTTTTTTTTTTTTGATC  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAACATTATTTCCTTGTTGGAGAGCTTGA-TTTTTTTTTTTTTTTGATC  249

seq1  CTTTAAAATAAATCTTAAAAAAAAAATTTTTTTTTTAAAGCAGGAGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAATAAATCTTAAAAAAAAAATTTTTTTTTTAAAGCAGGAGCTGT  299

seq1  GTGCATGCTAGACACGTGCTCTACCAGACAGATTTCTGACACCCTCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGCTAGACACGTGCTCTACCAGACAGATTTCTGACACCCTCTCAT  349

seq1  TATTATTTGTTAGGCTCTCACACATAAATAACGGTTATAGTTTACATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTGTTAGGCTCTCACACATAAATAACGGTTATAGTTTACATTGC  399

seq1  TTGTTTAAGCATGCCTCTGGTTTAAAATTCTGCTTCATTTGTAGAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAGCATGCCTCTGGTTTAAAATTCTGCTTCATTTGTAGAGCATG  449

seq1  ACAACAACTTTGCTTTATTCTCCCCCTACCAGCTGAAACGAATTACAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACTTTGCTTTATTCTCCCCCTACCAGCTGAAACGAATTACAAAC  499

seq1  TCACATGAGAAACAATTTAGGGTCTGGGGATATAGCTAAATGATACGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGAGAAACAATTTAGGGTCTGGGGATATAGCTAAATGATACGGAA  549

seq1  CACTACATGCATGAGTTCTGGGTTCAACCTGCATGCTTGTGCGCGTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACATGCATGAGTTCTGGGTTCAACCTGCATGCTTGTGCGCGTGCAT  599

seq1  GCACACACACACACACACACACATATACACACACATACACACACAAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACACACACACACACATATACACACACATACACACACAAGAGT  649

seq1  TGTCAACACATTTTAAAAGACAAACCCTTTGTAGATTTGTAGTGGTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACACATTTTAAAAGACAAACCCTTTGTAGATTTGTAGTGGTCTGT  699

seq1  CTTCCACTTTAGCAAAACACCTGAGGTAATCAACTTGAAAAGAGGAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACTTTAGCAAAACACCTGAGGTAATCAACTTGAAAAGAGGAAAGG  749

seq1  TGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGTTTGCTGCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGTTTGCTGCTCTT  799

seq1  TCAAAGGTACTGAGTCCAATCCCCAGTAACCATGTGGTGGCTCACAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTACTGAGTCCAATCCCCAGTAACCATGTGGTGGCTCACAAACA  849

seq1  TCTATACTAGGATCTGGCGCCCTCTTCTGGCAT-ATGAAGATAAAGCATG  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTATACTAGGATCTGGCGCCCTCTTCTGGCATAATGAAGATAAAGCATG  899

seq1  CACGTCCATTAAATAAATAAACAAAGAAACCAAAAAACCCAAAAAGATGA  949
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  CACGTCCATTAAATAAATAAACAAAGAAACCAAAAAACCC-AAAAGATG-  947

seq1  AAAGAGTATTTTGGTTACATTTGGGATGTCTTAGTCCATGGTTCACAGCC  999
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  AAAGAGTA-TTTGGTTACATTTGGGATGTCTTAGTCCATGGTTCCCAGCC  996

seq1  ACTGCTTCGGAGCCTGCAGCAAGACAATTCATCACATTGAGAGCATGT  1047
      |||||||| ||| ||||||| |||||| ||||||||||||||||||||
seq2  ACTGCTTC-GAG-CTGCAGC-AGACAA-TCATCACATTGAGAGCATGT  1040

seq1: chr3_107885086_107886153
seq2: B6Ng01-133K09.g_68_1128 (reverse)

seq1  GCTCCCCCACCTCCACTCTGGCTTAGAAAAGGACGCAGAAGCTCTGTCTA  50
      |||||||||||||||||||||| || ||||||||||||||||||| ||||
seq2  GCTCCCCCACCTCCACTCTGGC-TAAAAAAGGACGCAGAAGCTCTTTCTA  49

seq1  GGCATTGTGCCTTAAGGTCTCTGTGCCCACTTCCTAGTACTCTAGGTACA  100
      | ||||||||  |||||||||||||||||| |||||||||||||||||||
seq2  GACATTGTGC--TAAGGTCTCTGTGCCCAC-TCCTAGTACTCTAGGTACA  96

seq1  GTCCCAATGCTGGACAAAGAGGGGTGCTTACCCTAGATCAGAACCCAGCT  150
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GT-CCAATGCTGGACAAAGA-GGGTGCTTACCCTAGATCAGAACCCAGCT  144

seq1  ACCTACTTGCCTTGGTCCCTACTGGAACGCTACCTGCAGAGTTCAAGAGT  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACCTACTTGCCTTGGTCCCTACTGGAACGCTA-CTGCAGAGTTCAAGAGT  193

seq1  ATTCTGGTCAGCAGCCCTGTGCCCCTTGTCTGTCTGTTTGCCTTGTAAAG  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTCTGGTCAGCAGCCCTGTGCCCTTTGTCTGTCTGTTTGCCTTGTAAAG  243

seq1  CTGCAGCCAGTCCCCCAGGACAGCTCAGGGGCTGGCATGGGCCATACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCCAGTCCCCCAGGACAGCTCAGGGGCTGGCATGGGCCATACCAA  293

seq1  GTGCAACTATAAGCAGGGGAGACCCTGAGATGGCCACAAGTAGGGGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAACTATAAGCAGGGGAGACCCTGAGATGGCCACAAGTAGGGGGCTG  343

seq1  GGAGAGTTCAGGGGAGTTCAGAAATCCAGAGAAGGAGCAAGAGTTGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTTCAGGGGAGTTCAGAAATCCAGAGAAGGAGCAAGAGTTGAGAG  393

seq1  GTGAGAACTCTAACATGGCTGTAACCTCTTCCATGCCAGTGAGACCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACTCTAACATGGCTGTAACCTCTTCCATGCCAGTGAGACCACCC  443

seq1  AGATCCAGGGTCTCAACAGGGAGAAACAAGACAAGCTGATGTGGCCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGGGTCTCAACAGGGAGAAACAAGACAAGCTGATGTGGCCAAGG  493

seq1  CAGCCTGGCAGGGGAGGGGCCAAGTCTCCTTAAAACCACAGCCCCAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGCAGGGGAGGGGCCAAGTCTCCTTAAAACCACAGCCCCAGGGG  543

seq1  ACAGAAAGTGGACACAGCCTGGCTGGCTAAAGGGTAGAAGGAGAGACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGTGGACACAGCCTGGCTGGCTAAAGGGTAGAAGGAGAGACACA  593

seq1  GAGGGAGGCCAACAATCCTCCCCTGAGCCCTGCAGCCTCAGGCTGGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGCCAACAATCCTCCCCTGAGCCCTGCAGCCTCAGGCTGGCTTT  643

seq1  CTCTGCCCACCACTGTCTTTTGGGCCCTGACTACAGACTCTTCAAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCACCACTGTCTTTTGGGCCCTGACTACAGACTCTTCAAGAGAG  693

seq1  ACAAGGTCTGTGCTACCCAGGATCCGGCTGGTAGCTGGAGCACTGGTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTCTGTGCTACCCAGGATCCGGCTGGTAGCTGGAGCACTGGTCTA  743

seq1  ATGTGGATAGGAGCTAGTTACGGAGGCTTCCTAGACCACACGGGCAGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATAGGAGCTAGTTACGGAGGCTTCCTAGACCACACGGGCAGCAC  793

seq1  TCTTCACAGCAGCTGCAAGGCTAATGTCAGGTGAGGACAACCTCTTTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGCAGCTGCAAGGCTAATGTCAGGTGAGGACAACCTCTTTAGG  843

seq1  AAGAGCACCTTGGAAAATGGGAACTGCATGTGGAAGGCACATAGGACTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACCTTGGAAAATGGGAACTGCATGTGGAAGGCACATAGGACTCT  893

seq1  GCTTTTGTTTACTTGCTTGTTTTAACCTCTGGACACAGGCTATCAGTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTTTACTTGCTTGTTTTAACCTCTGGACACAGGCTATCAGTGGG  943

seq1  TGAGAAGCAGCCTTGTCCTACCTGGCCGCAGCCCCAGGACTCACAGGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCAGCCTTGTCCTACCTGGCCGCAGCCCCAGGACTCACAGGGAA  993

seq1  ATGTCCTACAAGCACTCTATAAAGCTTAGGTTAGAGCCCTAAGCCCATGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTACAAGCACTCTATAAAGCTTAGGTTAGAGCCCTAAGCCCATGT  1043

seq1  GACTGCAATTAGGAATTC  1068
      ||||||||||||||||||
seq2  GACTGCAATTAGGAATTC  1061