BAC Information

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BAC

Clone NameB6Ng01-133L01
Chromosome3 (Build37)
Map Location 94,635,898 - 94,637,016
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn
Downstream genePogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133L01.bB6Ng01-133L01.g
ACCDH934174DH934175
length1,0971,227
definitionDH934174|Mus musculus domesticus DNA, BAC clone: B6Ng01-133L01, 5' end.DH934175|Mus musculus domesticus DNA, BAC clone: B6Ng01-133L01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggtagcatggtcccttccctaaggttggttttcatcagagggc
ctgggtgttttaaaggcactccccgtatctgggcacctgtgcgcctgagc
cttcctcttcctagtgggccaggtctgctatggtaatatatgcacctcag
ccctcagctgggtcctggctctcaaaggcaacaggagacactaactcctt
tccatggtttctaggaaaggaagttaaaggttaacgacagctcccatgga
gcttcccaccactggacagcccacttatgcagacacttatttgctttctt
gccttgtagtttctgctccaggttgaaaattgaagccacttgttgcttgg
aaatgtcaaacgctcccaagtcttcaaaggcagaagtggcctcggtgctg
atacacagtcacttgagtctgagactcagcgagaggtggaccggttgctg
tgggcagtgtggttgggactggggagggtgggatcgcacagtccaggcag
aagatggctttgagggacaatggcagctcttttcaatcaatcaaacaaac
aaacaaacaacaaactaaccgcacctgaacctcccgaataccctcagggc
ggtagaagctgcaaagtaaacagattttgttttggaaaatgtagtaggaa
aaaaaaaattcaccatcggaacctctcccagtggaaaaagctcgacagct
tactgcactggggcgagcagaaaggaggactgaaaggaggacgggagggg
tgccgacctccacgggagagcatcaggaagtaaaaggcgaggggagattg
tctgagcagtgtcacagataaggagcttagaagctgctacgctgtggctg
gctttctttgcaaatattatctgctaccaccctacattcagaggctcaag
agagaggaaaacccagagaaacttgcagactgggtttgaaaagaaaggga
attcctcattaaatttagcaagaagcatttaaggttctagcttaaatgta
tttgcaaatttacagaacaacttcatcaggcatcagattcgtggatactg
cctgaattcatagtgataagatggtagcttcaccttaaaattagtta
gaattctatgtttgccctggccaaggtcaaagccgaaggctcaacaggag
tgtggaggggcatcaagtttttttttttttttttttttttttttgtggta
aatggggatgtgaaacaacaggacaagcctactggaacccttcctctacc
tgggatctgatcacggtaaaatggggcagtaactccgatgggccaaatca
aggtgagagaaacagctctaaatatccggagaacaggtgtgcctataaaa
acagcccctctggaccatgcaaaggcaaagactgcaaccccatgcttata
aaattcactgagaaagggagataagatcatcagagttggcttaagggaaa
taggtggggttagcgagtatatgctccaacgagagaccctggattcattt
tcaagattagactgacagtgggagacccggctgtagcatccatggggccc
aacaaagtccttctcgagcagggcccccctgccagatccaaacccccggt
tccaataaccattcagcctgtccagatgaccacgggcccctttaatatta
ccacacccactgctgctccacaaaaccctctgactattgcctccacaaac
ccttcaacgggacagagaatgtttaacttagtgagaggagctttttatgc
ccttaacagaacaaatccggatgctactgaggactgttggctatctcgag
ctccccttattatgaaggaattggttttaatggagatttcaataaaacca
gcagccatacttcctgctcataaaggaacagggacagaaactgaccctag
ctgaagtatcggcaagaaaacccagggcctctgtataggtactccccctc
ctatccacaaacatctgtgcgggccgaaattcagtctgtgtctaaaacag
aaactaactatacctggggctgtttaaggttggctggtgggcctgtaaat
agggctcaccccctggtgtatcaactaggttttgatcttctcatgatttc
tggtgtatgatccactgtacttcggaggtgtactatcaattctgcaccta
gtctagaggaaacttctaggtcaaggattaaagagagacattacctacct
aggcctaatcctggccattggaatgcaagtgggagtggaacaaggaattc
ggccttggactggaagggttaacaaggaatccaatcctttaggagaatac
cgtgtatggatgagacacgcataagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94635898_94637016
seq2: B6Ng01-133L01.b_47_1143 (reverse)

seq1  TAACTAATATTAAGATGAAGCTACCCAGTCATTATCACCTATGAAATCAG  50
      |||||||| ||||| ||||||||||   || |||||| ||||||| ||||
seq2  TAACTAATTTTAAGGTGAAGCTACC--ATC-TTATCA-CTATGAATTCAG  46

seq1  GCAGTAATTCACACGGAAATCTTGATGGCTGATGAAGTTGTTCTTGTGAA  100
      ||||||  || ||||  |||| ||||| ||||||||||||||| ||| ||
seq2  GCAGTA--TC-CACG--AATC-TGATGCCTGATGAAGTTGTTC-TGTAAA  89

seq1  TTTTTGCCAAATACATTTTGAGGCTAGAACCCTTTAATTGCTTCTTGCTA  150
      |||    |||||||||||  | |||||||||  |||| ||||||||||| 
seq2  TTT---GCAAATACATTT--AAGCTAGAACC--TTAAATGCTTCTTGCT-  131

seq1  AAATCTAATGAGGAATTTCCCTTTCTTTTCAAACCCAGTCTGCAAGTTTC  200
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAATTTAATGAGGAA-TTCCCTTTCTTTTCAAACCCAGTCTGCAAGTTTC  180

seq1  TCTTGGTTTTCCTCTCCTCCTGAGCCTCTTGAATGTAGGGTGGTAGCAGA  250
      ||| ||||||||||| ||| |||||||| |||||||||||||||||||||
seq2  TCTGGGTTTTCCTCT-CTCTTGAGCCTC-TGAATGTAGGGTGGTAGCAGA  228

seq1  TAATATTTGCAAAGGAAAGCCAGCCACAGCGTAGCAGCTTCTAAGCTCCT  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAATATTTGCAAA-GAAAGCCAGCCACAGCGTAGCAGCTTCTAAGCTCCT  277

seq1  TATCTGTGACACTGCTCAGACAATCTCCCCTCGCCTTTTACTTCCTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGACACTGCTCAGACAATCTCCCCTCGCCTTTTACTTCCTGATG  327

seq1  CTCTCCCGTGGAGGTCGGCACCCCTCCCGTCCTCCTTTCAGTCCTCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCGTGGAGGTCGGCACCCCTCCCGTCCTCCTTTCAGTCCTCCTTT  377

seq1  CTGCTCGCCCCAGTGCAGTAAGCTGTCGAGC-TTTTCCACTGGGAGAGGT  449
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGCTCGCCCCAGTGCAGTAAGCTGTCGAGCTTTTTCCACTGGGAGAGGT  427

seq1  TCCGATGGTGAATTTTTTTTTTCCTACTACATTTTCCAAAACAAAATCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATGGTGAATTTTTTTTTTCCTACTACATTTTCCAAAACAAAATCTG  477

seq1  TTTACTTTGCAGCTTCTACCGCCCTGAGGGTATTCGGGAGGTTCAGGTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTGCAGCTTCTACCGCCCTGAGGGTATTCGGGAGGTTCAGGTGC  527

seq1  GGTTAGTTTGTTGTTTGTTTGTTTGTTTGATTGATTGAAAAGAGCTGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTTTGTTGTTTGTTTGTTTGTTTGATTGATTGAAAAGAGCTGCCA  577

seq1  TTGTCCCTCAAAGCCATCTTCTGCCTGGACTGTGCGATCCCACCCTCCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTCAAAGCCATCTTCTGCCTGGACTGTGCGATCCCACCCTCCCC  627

seq1  AGTCCCAACCACACTGCCCACAGCAACCGGTCCACCTCTCGCTGAGTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAACCACACTGCCCACAGCAACCGGTCCACCTCTCGCTGAGTCTC  677

seq1  AGACTCAAGTGACTGTGTATCAGCACCGAGGCCACTTCTGCCTTTGAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAAGTGACTGTGTATCAGCACCGAGGCCACTTCTGCCTTTGAAGA  727

seq1  CTTGGGAGCGTTTGACATTTCCAAGCAACAAGTGGCTTCAATTTTCAACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGCGTTTGACATTTCCAAGCAACAAGTGGCTTCAATTTTCAACC  777

seq1  TGGAGCAGAAACTACAAGGCAAGAAAGCAAATAAGTGTCTGCATAAGTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGAAACTACAAGGCAAGAAAGCAAATAAGTGTCTGCATAAGTGG  827

seq1  GCTGTCCAGTGGTGGGAAGCTCCATGGGAGCTGTCGTTAACCTTTAACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCAGTGGTGGGAAGCTCCATGGGAGCTGTCGTTAACCTTTAACTT  877

seq1  CCTTTCCTAGAAACCATGGAAAGGAGTTAGTGTCTCCTGTTGCCTTTGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTAGAAACCATGGAAAGGAGTTAGTGTCTCCTGTTGCCTTTGAG  927

seq1  AGCCAGGACCCAGCTGAGGGCTGAGGTGCATATATTACCATAGCAGACCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGACCCAGCTGAGGGCTGAGGTGCATATATTACCATAGCAGACCT  977

seq1  GGCCCACTAGGAAGAGGAAGGCTCAGGCGCACAGGTGCCCAGATACGGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACTAGGAAGAGGAAGGCTCAGGCGCACAGGTGCCCAGATACGGGG  1027

seq1  AGTGCCTTTAAAACACCCAGGCCCTCTGATGAAAACCAACCTTAGGGAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTTAAAACACCCAGGCCCTCTGATGAAAACCAACCTTAGGGAAG  1077

seq1  GGACCATGCTACCAGAATTC  1119
      ||||||||||||||||||||
seq2  GGACCATGCTACCAGAATTC  1097